RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 CLPSL2Q6UWE3 100 aa2.47□□□□□ -2.01
VPS39-212ENST00000570023 DEFB132Q7Z7B7 95 aa2.47□□□□□ -2.01
VPS39-212ENST00000570023 U3KQA8 63 aa2.47□□□□□ -2.01
VPS39-212ENST00000570023 A0A0C4DFX4 3053 aa2.47□□□□□ -2.01
VPS39-212ENST00000570023 A0A1W2PNU3 283 aaPredicted RBP2.46□□□□□ -2.02
VPS39-212ENST00000570023 LY6G6CO95867 125 aa2.46□□□□□ -2.02
VPS39-212ENST00000570023 IGFL1Q6UW32 110 aa2.46□□□□□ -2.02
VPS39-212ENST00000570023 C4orf3Q8WVX3 66 aa2.46□□□□□ -2.02
VPS39-212ENST00000570023 C16orf74Q96GX8 76 aa2.46□□□□□ -2.02
VPS39-212ENST00000570023 BRWD1Q9NSI6 2320 aa2.45□□□□□ -2.02
VPS39-212ENST00000570023 PCNTO95613 3336 aa2.45□□□□□ -2.02
VPS39-212ENST00000570023 H3BUX3 64 aa2.45□□□□□ -2.02
VPS39-212ENST00000570023 C15orf56Q8N910 161 aa2.45□□□□□ -2.02
VPS39-212ENST00000570023 Q96NJ1 140 aa2.45□□□□□ -2.02
VPS39-212ENST00000570023 RPL37AP61513 92 aaKnown RBP2.43□□□□□ -2.02
VPS39-212ENST00000570023 MRPL34Q9BQ48 92 aaKnown RBP2.43□□□□□ -2.02
VPS39-212ENST00000570023 CNTRLQ7Z7A1 2325 aa2.42□□□□□ -2.02
VPS39-212ENST00000570023 PTPRQQ9UMZ3 2332 aa2.42□□□□□ -2.02
VPS39-212ENST00000570023 NBDYA0A0U1RRE5 68 aa2.42□□□□□ -2.02
VPS39-212ENST00000570023 SSBP3-AS1Q7Z2R9 100 aa2.42□□□□□ -2.02
VPS39-212ENST00000570023 DEFB119Q8N690 84 aa2.42□□□□□ -2.02
VPS39-212ENST00000570023 KIAA0100Q14667 2235 aaKnown RBP2.42□□□□□ -2.02
VPS39-212ENST00000570023 PRRC2BQ5JSZ5 2229 aaKnown RBP2.41□□□□□ -2.02
VPS39-212ENST00000570023 SPRR1BP22528 89 aa2.41□□□□□ -2.02
VPS39-212ENST00000570023 NOP10Q9NPE3 64 aaKnown RBP2.41□□□□□ -2.02
VPS39-212ENST00000570023 KRTAP13-3Q3SY46 172 aa2.4□□□□□ -2.03
VPS39-212ENST00000570023 PRO0255Q9UI72 69 aa2.4□□□□□ -2.03
VPS39-212ENST00000570023 ASCC3Q8N3C0 2202 aaKnown RBP2.4□□□□□ -2.03
VPS39-212ENST00000570023 PLCE1Q9P212 2302 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 A0A0G2JQZ4 141 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 A0A1B0GU33 70 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 A0A1W2PNN7 141 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 COX6B2Q6YFQ2 88 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 MED13LQ71F56 2210 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 SORL1Q92673 2214 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 EP400Q96L91 3159 aa2.39□□□□□ -2.03
VPS39-212ENST00000570023 KMT2BQ9UMN6 2715 aaPredicted RBP2.39□□□□□ -2.03
VPS39-212ENST00000570023 URB1O60287 2271 aaKnown RBP2.38□□□□□ -2.03
VPS39-212ENST00000570023 LYNX1P0DP58 116 aa2.38□□□□□ -2.03
VPS39-212ENST00000570023 KRTAP5-1Q6L8H4 278 aa2.38□□□□□ -2.03
VPS39-212ENST00000570023 CENPFP49454 3210 aa2.38□□□□□ -2.03
VPS39-212ENST00000570023 ABCA1O95477 2261 aa2.37□□□□□ -2.03
VPS39-212ENST00000570023 H0YAA0 97 aa2.37□□□□□ -2.03
VPS39-212ENST00000570023 LELP1Q5T871 98 aa2.37□□□□□ -2.03
VPS39-212ENST00000570023 PSORS1C2Q9UIG4 136 aa2.37□□□□□ -2.03
VPS39-212ENST00000570023 LY6EQ16553 131 aa2.36□□□□□ -2.03
VPS39-212ENST00000570023 BRD3OSQ6XYD6 125 aa2.36□□□□□ -2.03
VPS39-212ENST00000570023 Q6ZSA8 131 aa2.36□□□□□ -2.03
VPS39-212ENST00000570023 GOLGB1Q14789 3259 aaKnown RBP2.36□□□□□ -2.03
VPS39-212ENST00000570023 SDK1Q7Z5N4 2213 aa2.36□□□□□ -2.03
VPS39-212ENST00000570023 SRCAPQ6ZRS2 3230 aa2.34□□□□□ -2.03
VPS39-212ENST00000570023 KRTAP1-4P0C5Y4 121 aa2.34□□□□□ -2.03
VPS39-212ENST00000570023 H1FX-AS1Q4G0G2 97 aa2.34□□□□□ -2.03
VPS39-212ENST00000570023 CRIPTQ9P021 101 aa2.34□□□□□ -2.03
VPS39-212ENST00000570023 DNAH12Q6ZR08 3092 aa2.33□□□□□ -2.04
VPS39-212ENST00000570023 TPRXLQ17RH7 258 aa2.33□□□□□ -2.04
VPS39-212ENST00000570023 ASXL3Q9C0F0 2248 aa2.33□□□□□ -2.04
VPS39-212ENST00000570023 GIG44P09565 113 aaPredicted RBP2.32□□□□□ -2.04
VPS39-212ENST00000570023 DEFB136Q30KP8 78 aa2.31□□□□□ -2.04
VPS39-212ENST00000570023 LCE3EQ5T5B0 92 aa2.31□□□□□ -2.04
VPS39-212ENST00000570023 PRO2289Q9P1D8 64 aa2.31□□□□□ -2.04
VPS39-212ENST00000570023 DEFB130BP0DP73 79 aa2.3□□□□□ -2.04
VPS39-212ENST00000570023 DEFB130AP0DP74 79 aa2.3□□□□□ -2.04
VPS39-212ENST00000570023 KNL1Q8NG31 2342 aa2.3□□□□□ -2.04
VPS39-212ENST00000570023 CACNA1GO43497 2377 aa2.29□□□□□ -2.04
VPS39-212ENST00000570023 RPL37P61927 97 aaKnown RBP2.29□□□□□ -2.04
VPS39-212ENST00000570023 TYMSOSQ8TAI1 123 aa2.29□□□□□ -2.04
VPS39-212ENST00000570023 DOPEY2Q9Y3R5 2298 aa2.29□□□□□ -2.04
VPS39-212ENST00000570023 PLAC4Q8WY50 150 aa2.28□□□□□ -2.04
VPS39-212ENST00000570023 ABCA4P78363 2273 aa2.28□□□□□ -2.05
VPS39-212ENST00000570023 WNK1Q9H4A3 2382 aa2.27□□□□□ -2.05
VPS39-212ENST00000570023 H3BNG1 76 aa2.27□□□□□ -2.05
VPS39-212ENST00000570023 K7EIL1 84 aa2.27□□□□□ -2.05
VPS39-212ENST00000570023 KRTAP5-4Q6L8H1 288 aa2.27□□□□□ -2.05
VPS39-212ENST00000570023 WNK2Q9Y3S1 2297 aa2.27□□□□□ -2.05
VPS39-212ENST00000570023 TECTAO75443 2155 aa2.27□□□□□ -2.05
VPS39-212ENST00000570023 A0A096LPF7 62 aa2.26□□□□□ -2.05
VPS39-212ENST00000570023 KRTAP4-4Q9BYR3 166 aa2.26□□□□□ -2.05
VPS39-212ENST00000570023 CEP350Q5VT06 3117 aa2.26□□□□□ -2.05
VPS39-212ENST00000570023 KRTAP12-2P59991 146 aa2.25□□□□□ -2.05
VPS39-212ENST00000570023 C10orf99Q6UWK7 81 aa2.24□□□□□ -2.05
VPS39-212ENST00000570023 SPTBN1Q01082 2364 aaKnown RBP2.24□□□□□ -2.05
VPS39-212ENST00000570023 WDR87Q6ZQQ6 2873 aa2.24□□□□□ -2.05
VPS39-212ENST00000570023 HTTP42858 3142 aa2.23□□□□□ -2.05
VPS39-212ENST00000570023 PRLHP81277 87 aa2.23□□□□□ -2.05
VPS39-212ENST00000570023 ICE1Q9Y2F5 2266 aa2.22□□□□□ -2.05
VPS39-212ENST00000570023 UNC80Q8N2C7 3258 aa2.22□□□□□ -2.05
VPS39-212ENST00000570023 ALMS1Q8TCU4 4167 aa2.22□□□□□ -2.05
VPS39-212ENST00000570023 INE1O15225 51 aa2.22□□□□□ -2.05
VPS39-212ENST00000570023 SPART-AS1P0CW21 52 aa2.22□□□□□ -2.05
VPS39-212ENST00000570023 LINC01556Q5JQF7 62 aa2.22□□□□□ -2.05
VPS39-212ENST00000570023 USP34Q70CQ2 3546 aa2.21□□□□□ -2.06
VPS39-212ENST00000570023 COL6A3P12111 3177 aa2.21□□□□□ -2.06
VPS39-212ENST00000570023 AHCTF1Q8WYP5 2266 aa2.21□□□□□ -2.06
VPS39-212ENST00000570023 SPINK1P00995 79 aa2.2□□□□□ -2.06
VPS39-212ENST00000570023 Q6ZRN7 208 aaPredicted RBP2.2□□□□□ -2.06
VPS39-212ENST00000570023 BRCA2P51587 3418 aa2.2□□□□□ -2.06
VPS39-212ENST00000570023 ATRXP46100 2492 aa2.19□□□□□ -2.06
VPS39-212ENST00000570023 SZT2Q5T011 3432 aa2.19□□□□□ -2.06
VPS39-212ENST00000570023 C10orf95Q9H7T3 257 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms