RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 CHD8Q9HCK8 2581 aa11.46□□□□□ -0.57
SYNE3-204ENST00000555759 USP9YO00507 2555 aaPredicted RBP11.45□□□□□ -0.58
SYNE3-204ENST00000555759 GIG44P09565 113 aaPredicted RBP11.44□□□□□ -0.58
SYNE3-204ENST00000555759 FP248Q71RG6 208 aaPredicted RBP11.44□□□□□ -0.58
SYNE3-204ENST00000555759 RBM12B-AS1Q9P1G2 102 aa11.44□□□□□ -0.58
SYNE3-204ENST00000555759 Q75L30 129 aa11.43□□□□□ -0.58
SYNE3-204ENST00000555759 CHTF8P0CG12 524 aa11.42□□□□□ -0.58
SYNE3-204ENST00000555759 ZFYVE26Q68DK2 2539 aa11.42□□□□□ -0.58
SYNE3-204ENST00000555759 SETD2Q9BYW2 2564 aaPredicted RBP11.41□□□□□ -0.58
SYNE3-204ENST00000555759 Q96NJ1 140 aa11.41□□□□□ -0.58
SYNE3-204ENST00000555759 CEP295Q9C0D2 2601 aa11.4□□□□□ -0.58
SYNE3-204ENST00000555759 CYSTM1Q9H1C7 97 aa11.4□□□□□ -0.58
SYNE3-204ENST00000555759 NBDYA0A0U1RRE5 68 aa11.4□□□□□ -0.58
SYNE3-204ENST00000555759 RTL8CO15255 209 aa11.39□□□□□ -0.59
SYNE3-204ENST00000555759 FAM104AQ969W3 186 aa11.39□□□□□ -0.59
SYNE3-204ENST00000555759 CRIPTQ9P021 101 aa11.39□□□□□ -0.59
SYNE3-204ENST00000555759 C19orf73Q9NVV2 129 aa11.38□□□□□ -0.59
SYNE3-204ENST00000555759 SPRR4Q96PI1 79 aa11.37□□□□□ -0.59
SYNE3-204ENST00000555759 A0A096LNT2 108 aa11.36□□□□□ -0.59
SYNE3-204ENST00000555759 IGLV7-46A0A075B6I9 117 aa11.36□□□□□ -0.59
SYNE3-204ENST00000555759 TYMSOSQ8TAI1 123 aa11.36□□□□□ -0.59
SYNE3-204ENST00000555759 DSCR10P59022 87 aa11.35□□□□□ -0.59
SYNE3-204ENST00000555759 IGLV5-37A0A075B6J1 123 aa11.34□□□□□ -0.59
SYNE3-204ENST00000555759 A0A0G2JQZ4 141 aa11.34□□□□□ -0.59
SYNE3-204ENST00000555759 A0A1W2PNN7 141 aa11.34□□□□□ -0.59
SYNE3-204ENST00000555759 ANKRD11Q6UB99 2663 aaPredicted RBP11.34□□□□□ -0.59
SYNE3-204ENST00000555759 LRRK2Q5S007 2527 aa11.33□□□□□ -0.6
SYNE3-204ENST00000555759 FAM229BQ4G0N7 80 aa11.33□□□□□ -0.6
SYNE3-204ENST00000555759 Q8N9P0 234 aaPredicted RBP11.3□□□□□ -0.6
SYNE3-204ENST00000555759 LINC01558Q9Y6Z2 57 aa11.29□□□□□ -0.6
SYNE3-204ENST00000555759 SPTBN4Q9H254 2564 aa11.29□□□□□ -0.6
SYNE3-204ENST00000555759 ZNF861PO60384 105 aa11.27□□□□□ -0.6
SYNE3-204ENST00000555759 LINC01554Q52M75 96 aa11.26□□□□□ -0.61
SYNE3-204ENST00000555759 OXTP01178 125 aa11.25□□□□□ -0.61
SYNE3-204ENST00000555759 PRR26Q8N8Z3 221 aa11.23□□□□□ -0.61
SYNE3-204ENST00000555759 CENPFP49454 3210 aa11.23□□□□□ -0.61
SYNE3-204ENST00000555759 C9orf163Q8N9P6 203 aa11.22□□□□□ -0.61
SYNE3-204ENST00000555759 FASNP49327 2511 aaKnown RBP11.22□□□□□ -0.61
SYNE3-204ENST00000555759 Q5VV11 94 aa11.21□□□□□ -0.62
SYNE3-204ENST00000555759 APLNQ9ULZ1 77 aa11.19□□□□□ -0.62
SYNE3-204ENST00000555759 CNBPP62633 177 aaKnown RBP11.19□□□□□ -0.62
SYNE3-204ENST00000555759 GOLGB1Q14789 3259 aaKnown RBP11.15□□□□□ -0.62
SYNE3-204ENST00000555759 PLA2G1BP04054 148 aaKnown RBP11.14□□□□□ -0.63
SYNE3-204ENST00000555759 MTORP42345 2549 aa11.13□□□□□ -0.63
SYNE3-204ENST00000555759 H3BS24 57 aa11.12□□□□□ -0.63
SYNE3-204ENST00000555759 ANKRD17O75179 2603 aaKnown RBP11.1□□□□□ -0.63
SYNE3-204ENST00000555759 KRTAP24-1Q3LI83 254 aa11.07□□□□□ -0.64
SYNE3-204ENST00000555759 MMP24-AS1A0A0U1RRL7 71 aa11.06□□□□□ -0.64
SYNE3-204ENST00000555759 IGLV7-43P04211 117 aa11.05□□□□□ -0.64
SYNE3-204ENST00000555759 LINC00304Q8N9R0 145 aa11.05□□□□□ -0.64
SYNE3-204ENST00000555759 HRES1P13985 223 aa11.04□□□□□ -0.64
SYNE3-204ENST00000555759 CASC10Q5T4H9 136 aa11.04□□□□□ -0.64
SYNE3-204ENST00000555759 PSORS1C2Q9UIG4 136 aa11.04□□□□□ -0.64
SYNE3-204ENST00000555759 PRAC1Q96KF2 57 aa11.03□□□□□ -0.64
SYNE3-204ENST00000555759 SPRR1AP35321 89 aa11.02□□□□□ -0.64
SYNE3-204ENST00000555759 Q8NDZ9 215 aa11.02□□□□□ -0.64
SYNE3-204ENST00000555759 F8P00451 2351 aa11.02□□□□□ -0.65
SYNE3-204ENST00000555759 ANAPC11Q9NYG5 84 aa11.02□□□□□ -0.65
SYNE3-204ENST00000555759 POLQO75417 2590 aa11.01□□□□□ -0.65
SYNE3-204ENST00000555759 Q8N1X5 172 aa11.01□□□□□ -0.65
SYNE3-204ENST00000555759 KRTAP10-11P60412 298 aa11.01□□□□□ -0.65
SYNE3-204ENST00000555759 A0A087WTM6 91 aa11.01□□□□□ -0.65
SYNE3-204ENST00000555759 CR1P17927 2039 aa11□□□□□ -0.65
SYNE3-204ENST00000555759 A0A1B0GU33 70 aa10.99□□□□□ -0.65
SYNE3-204ENST00000555759 KRTAP10-3P60369 221 aa10.98□□□□□ -0.65
SYNE3-204ENST00000555759 SPINK7P58062 85 aa10.97□□□□□ -0.65
SYNE3-204ENST00000555759 EPG5Q9HCE0 2579 aa10.95□□□□□ -0.66
SYNE3-204ENST00000555759 ASB16-AS1Q495Z4 193 aa10.95□□□□□ -0.66
SYNE3-204ENST00000555759 LINC00472Q9H8W2 130 aa10.93□□□□□ -0.66
SYNE3-204ENST00000555759 LUZP6Q538Z0 58 aa10.92□□□□□ -0.66
SYNE3-204ENST00000555759 A0A0D9SG42 100 aa10.92□□□□□ -0.66
SYNE3-204ENST00000555759 CSAG1Q6PB30 78 aa10.91□□□□□ -0.66
SYNE3-204ENST00000555759 ACANP16112 2415 aa10.91□□□□□ -0.66
SYNE3-204ENST00000555759 SPRR1BP22528 89 aa10.91□□□□□ -0.66
SYNE3-204ENST00000555759 C9orf92A6NGG3 77 aa10.9□□□□□ -0.66
SYNE3-204ENST00000555759 K7EIL1 84 aa10.9□□□□□ -0.66
SYNE3-204ENST00000555759 DMAC1Q96GE9 116 aa10.87□□□□□ -0.67
SYNE3-204ENST00000555759 FLNBO75369 2602 aaKnown RBP10.83□□□□□ -0.68
SYNE3-204ENST00000555759 ZCCHC13Q8WW36 166 aaKnown RBP10.82□□□□□ -0.68
SYNE3-204ENST00000555759 TNP2Q05952 138 aa10.81□□□□□ -0.68
SYNE3-204ENST00000555759 Q5W150 140 aa10.78□□□□□ -0.68
SYNE3-204ENST00000555759 WWC2-AS2Q96NR7 200 aa10.74□□□□□ -0.69
SYNE3-204ENST00000555759 KRTAP1-3Q8IUG1 177 aa10.74□□□□□ -0.69
SYNE3-204ENST00000555759 PRRC2CQ9Y520 2896 aaKnown RBP10.73□□□□□ -0.69
SYNE3-204ENST00000555759 Q6ZR54 194 aa10.72□□□□□ -0.69
SYNE3-204ENST00000555759 KRTAP29-1A8MX34 341 aaPredicted RBP10.71□□□□□ -0.7
SYNE3-204ENST00000555759 HECTD1Q9ULT8 2610 aa10.69□□□□□ -0.7
SYNE3-204ENST00000555759 KRTAP26-1Q6PEX3 210 aa10.68□□□□□ -0.7
SYNE3-204ENST00000555759 BPTFQ12830 3046 aa10.68□□□□□ -0.7
SYNE3-204ENST00000555759 KRTAP1-1Q07627 177 aa10.67□□□□□ -0.7
SYNE3-204ENST00000555759 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.67□□□□□ -0.7
SYNE3-204ENST00000555759 A6NN06 94 aa10.66□□□□□ -0.7
SYNE3-204ENST00000555759 A0A0A0MQY5 61 aa10.65□□□□□ -0.71
SYNE3-204ENST00000555759 UTRNP46939 3433 aa10.64□□□□□ -0.71
SYNE3-204ENST00000555759 LCE6AA0A183 80 aa10.64□□□□□ -0.71
SYNE3-204ENST00000555759 PLAC8Q9NZF1 115 aa10.61□□□□□ -0.71
SYNE3-204ENST00000555759 KRTAP4-16G5E9R7 235 aaPredicted RBP10.61□□□□□ -0.71
SYNE3-204ENST00000555759 SPATA8Q6RVD6 105 aa10.6□□□□□ -0.71
SYNE3-204ENST00000555759 ROMO1P60602 79 aa10.59□□□□□ -0.71
SYNE3-204ENST00000555759 COX6B2Q6YFQ2 88 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms