RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 IGLV2-33A0A075B6J2 118 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-205ENST00000553403 FAM19A5Q7Z5A7 132 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-205ENST00000553403 MRPL55Q7Z7F7 128 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-205ENST00000553403 PKIGQ9Y2B9 76 aa16.85■□□□□ 0.29
CCDC88C-205ENST00000553403 A0A096LNI7 61 aa16.85■□□□□ 0.29
CCDC88C-205ENST00000553403 MT-ATP8P03928 68 aa16.85■□□□□ 0.29
CCDC88C-205ENST00000553403 SPRR1AP35321 89 aa16.82■□□□□ 0.28
CCDC88C-205ENST00000553403 VPS13DQ5THJ4 4388 aa16.82■□□□□ 0.28
CCDC88C-205ENST00000553403 SCGB1A1P11684 91 aa16.81■□□□□ 0.28
CCDC88C-205ENST00000553403 C9orf163Q8N9P6 203 aa16.81■□□□□ 0.28
CCDC88C-205ENST00000553403 RPL37AP8A6NKH3 93 aa16.81■□□□□ 0.28
CCDC88C-205ENST00000553403 M0R2N4 97 aa16.81■□□□□ 0.28
CCDC88C-205ENST00000553403 GAGE2AQ6NT46 116 aa16.81■□□□□ 0.28
CCDC88C-205ENST00000553403 LYSTQ99698 3801 aa16.81■□□□□ 0.28
CCDC88C-205ENST00000553403 PCP4P48539 62 aa16.79■□□□□ 0.28
CCDC88C-205ENST00000553403 STARD9Q9P2P6 4700 aa16.79■□□□□ 0.28
CCDC88C-205ENST00000553403 KRTAP4-16G5E9R7 235 aaPredicted RBP16.78■□□□□ 0.28
CCDC88C-205ENST00000553403 Q6ZR54 194 aa16.78■□□□□ 0.28
CCDC88C-205ENST00000553403 DNAH10Q8IVF4 4471 aa16.77■□□□□ 0.28
CCDC88C-205ENST00000553403 IGKV2-24A0A0C4DH68 120 aa16.77■□□□□ 0.28
CCDC88C-205ENST00000553403 RYR3Q15413 4870 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 ETDCA0A1B0GVM5 59 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 B5MCH6 92 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 CCKP06307 115 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 SDIM1Q6ZPB5 146 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 Q6ZRX8 168 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 DHRS4-AS1Q9P1J3 65 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 LAMTOR3Q9UHA4 124 aa16.75■□□□□ 0.27
CCDC88C-205ENST00000553403 A0A1W2PNN7 141 aa16.74■□□□□ 0.27
CCDC88C-205ENST00000553403 A0A1B0GV72 72 aa16.73■□□□□ 0.27
CCDC88C-205ENST00000553403 RBM3P98179 157 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-205ENST00000553403 LCE6AA0A183 80 aa16.72■□□□□ 0.27
CCDC88C-205ENST00000553403 A0A087WTM6 91 aa16.7■□□□□ 0.26
CCDC88C-205ENST00000553403 REG3GQ6UW15 175 aa16.69■□□□□ 0.26
CCDC88C-205ENST00000553403 LOC110117498A0A087WWA1 95 aa16.69■□□□□ 0.26
CCDC88C-205ENST00000553403 LINC00474Q9P2X8 69 aa16.69■□□□□ 0.26
CCDC88C-205ENST00000553403 LINC00643Q86TS7 51 aa16.68■□□□□ 0.26
CCDC88C-205ENST00000553403 SMCR5Q8TEV8 140 aa16.68■□□□□ 0.26
CCDC88C-205ENST00000553403 TENM2Q9NT68 2774 aa16.67■□□□□ 0.26
CCDC88C-205ENST00000553403 CHTF8P0CG12 524 aa16.65■□□□□ 0.26
CCDC88C-205ENST00000553403 Q9BRP9 147 aa16.65■□□□□ 0.26
CCDC88C-205ENST00000553403 PDE6GP18545 87 aa16.65■□□□□ 0.26
CCDC88C-205ENST00000553403 NDUFV3P56181 108 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-205ENST00000553403 Q6ZQT0 140 aa16.64■□□□□ 0.25
CCDC88C-205ENST00000553403 Q6Q795 121 aa16.63■□□□□ 0.25
CCDC88C-205ENST00000553403 DSCR8Q96T75 97 aa16.63■□□□□ 0.25
CCDC88C-205ENST00000553403 C1orf134Q5TEV5 83 aa16.61■□□□□ 0.25
CCDC88C-205ENST00000553403 LINC00846Q9NV44 126 aa16.61■□□□□ 0.25
CCDC88C-205ENST00000553403 SACSQ9NZJ4 4579 aa16.61■□□□□ 0.25
CCDC88C-205ENST00000553403 LY6G6CO95867 125 aa16.6■□□□□ 0.25
CCDC88C-205ENST00000553403 TRBV7-7A0A0K0K1E9 115 aa16.58■□□□□ 0.24
CCDC88C-205ENST00000553403 TRBV7-4A0A0J9YYF1 115 aa16.57■□□□□ 0.24
CCDC88C-205ENST00000553403 LINC01547P58512 204 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-205ENST00000553403 C21orf62-AS1Q17RA5 79 aa16.57■□□□□ 0.24
CCDC88C-205ENST00000553403 Q8N377 158 aa16.57■□□□□ 0.24
CCDC88C-205ENST00000553403 PHF5AQ7RTV0 110 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-205ENST00000553403 LINC00476Q8WZB0 136 aa16.56■□□□□ 0.24
CCDC88C-205ENST00000553403 UBE2BP63146 152 aa16.56■□□□□ 0.24
CCDC88C-205ENST00000553403 RYR2Q92736 4967 aa16.54■□□□□ 0.24
CCDC88C-205ENST00000553403 IMUPQ9GZP8 106 aa16.54■□□□□ 0.24
CCDC88C-205ENST00000553403 IGLV5-48A0A075B6I7 105 aa16.53■□□□□ 0.24
CCDC88C-205ENST00000553403 DEFB105AQ8NG35 78 aa16.53■□□□□ 0.24
CCDC88C-205ENST00000553403 SPACA4Q8TDM5 124 aa16.53■□□□□ 0.24
CCDC88C-205ENST00000553403 EPM2AB3EWF7 344 aa16.52■□□□□ 0.23
CCDC88C-205ENST00000553403 RTL8CO15255 209 aa16.52■□□□□ 0.23
CCDC88C-205ENST00000553403 FAM19A1Q7Z5A9 133 aa16.52■□□□□ 0.23
CCDC88C-205ENST00000553403 PANO1I0J062 215 aa16.51■□□□□ 0.23
CCDC88C-205ENST00000553403 ERC2-IT1O76042 136 aa16.5■□□□□ 0.23
CCDC88C-205ENST00000553403 Q6JHZ5 121 aa16.5■□□□□ 0.23
CCDC88C-205ENST00000553403 ST20-AS1Q8NBB2 130 aa16.49■□□□□ 0.23
CCDC88C-205ENST00000553403 KRTAP11-1Q8IUC1 163 aa16.47■□□□□ 0.23
CCDC88C-205ENST00000553403 DPH3Q96FX2 82 aa16.47■□□□□ 0.23
CCDC88C-205ENST00000553403 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-205ENST00000553403 DNAH6Q9C0G6 4158 aa16.47■□□□□ 0.23
CCDC88C-205ENST00000553403 H0Y9J4 135 aa16.46■□□□□ 0.23
CCDC88C-205ENST00000553403 PRLHP81277 87 aa16.44■□□□□ 0.22
CCDC88C-205ENST00000553403 UBL5Q9BZL1 73 aa16.44■□□□□ 0.22
CCDC88C-205ENST00000553403 ALMS1Q8TCU4 4167 aa16.42■□□□□ 0.22
CCDC88C-205ENST00000553403 IGLV5-52A0A0A0MRZ9 124 aa16.41■□□□□ 0.22
CCDC88C-205ENST00000553403 TNP2Q05952 138 aa16.4■□□□□ 0.22
CCDC88C-205ENST00000553403 ATP5EP2Q5VTU8 51 aa16.4■□□□□ 0.22
CCDC88C-205ENST00000553403 FUSP35637 526 aaKnown RBP eCLIP16.38■□□□□ 0.21
CCDC88C-205ENST00000553403 DNAH17Q9UFH2 4485 aa16.38■□□□□ 0.21
CCDC88C-205ENST00000553403 HIGD2AQ9BW72 106 aa16.37■□□□□ 0.21
CCDC88C-205ENST00000553403 KMT2AQ03164 3969 aa16.37■□□□□ 0.21
CCDC88C-205ENST00000553403 BCE1O60756 84 aa16.37■□□□□ 0.21
CCDC88C-205ENST00000553403 DNAH2Q9P225 4427 aa16.36■□□□□ 0.21
CCDC88C-205ENST00000553403 IGKV3D-7A0A0C4DH55 119 aa16.36■□□□□ 0.21
CCDC88C-205ENST00000553403 C3orf22Q8N5N4 141 aa16.36■□□□□ 0.21
CCDC88C-205ENST00000553403 UBE2AP49459 152 aa16.34■□□□□ 0.21
CCDC88C-205ENST00000553403 PLAC8Q9NZF1 115 aa16.34■□□□□ 0.21
CCDC88C-205ENST00000553403 SMIM29Q86T20 159 aa16.34■□□□□ 0.21
CCDC88C-205ENST00000553403 HYDINQ4G0P3 5121 aa16.33■□□□□ 0.2
CCDC88C-205ENST00000553403 Q6ZVQ6 151 aa16.31■□□□□ 0.2
CCDC88C-205ENST00000553403 KRTAP13-1Q8IUC0 172 aa16.3■□□□□ 0.2
CCDC88C-205ENST00000553403 C1orf137Q5JT78 98 aa16.29■□□□□ 0.2
CCDC88C-205ENST00000553403 A0A1B0GW54 56 aa16.28■□□□□ 0.2
CCDC88C-205ENST00000553403 SPRR1BP22528 89 aa16.27■□□□□ 0.2
CCDC88C-205ENST00000553403 F8WEM9 126 aa16.27■□□□□ 0.19
CCDC88C-205ENST00000553403 ANAPC13Q9BS18 74 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms