RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ABCA4P78363 2273 aa3.2□□□□□ -1.9
CD44-236ENST00000533222 FAM168BA1KXE4 195 aa3.2□□□□□ -1.9
CD44-236ENST00000533222 KRTAP11-1Q8IUC1 163 aa3.2□□□□□ -1.9
CD44-236ENST00000533222 MMP24-AS1A0A0U1RRL7 71 aa3.19□□□□□ -1.9
CD44-236ENST00000533222 A0A1B0GU33 70 aa3.19□□□□□ -1.9
CD44-236ENST00000533222 SPRR1AP35321 89 aa3.19□□□□□ -1.9
CD44-236ENST00000533222 SPINT4Q6UDR6 99 aa3.19□□□□□ -1.9
CD44-236ENST00000533222 WFDC10BQ8IUB3 73 aa3.19□□□□□ -1.9
CD44-236ENST00000533222 TECTAO75443 2155 aa3.18□□□□□ -1.9
CD44-236ENST00000533222 SPINK13Q1W4C9 94 aa3.18□□□□□ -1.9
CD44-236ENST00000533222 COX6B2Q6YFQ2 88 aa3.18□□□□□ -1.9
CD44-236ENST00000533222 ALMS1Q8TCU4 4167 aa3.18□□□□□ -1.9
CD44-236ENST00000533222 A0A1W2PNU3 283 aaPredicted RBP3.17□□□□□ -1.9
CD44-236ENST00000533222 H3BUX3 64 aa3.17□□□□□ -1.9
CD44-236ENST00000533222 Q6ZRX8 168 aa3.17□□□□□ -1.9
CD44-236ENST00000533222 Q96NJ1 140 aa3.17□□□□□ -1.9
CD44-236ENST00000533222 ANKRD17O75179 2603 aaKnown RBP3.16□□□□□ -1.9
CD44-236ENST00000533222 WDR87Q6ZQQ6 2873 aa3.16□□□□□ -1.9
CD44-236ENST00000533222 AHCTF1Q8WYP5 2266 aa3.16□□□□□ -1.9
CD44-236ENST00000533222 A0A0G2JQZ4 141 aa3.16□□□□□ -1.9
CD44-236ENST00000533222 NBDYA0A0U1RRE5 68 aa3.16□□□□□ -1.9
CD44-236ENST00000533222 A0A1W2PNN7 141 aa3.16□□□□□ -1.9
CD44-236ENST00000533222 DEFB109BQ30KR1 87 aa3.16□□□□□ -1.9
CD44-236ENST00000533222 CLPSL2Q6UWE3 100 aa3.16□□□□□ -1.9
CD44-236ENST00000533222 RPL37AP61513 92 aaKnown RBP3.15□□□□□ -1.91
CD44-236ENST00000533222 PCOTHQ58A44 107 aa3.15□□□□□ -1.91
CD44-236ENST00000533222 C5orf56Q8N8D9 126 aa3.15□□□□□ -1.91
CD44-236ENST00000533222 SPTBN1Q01082 2364 aaKnown RBP3.15□□□□□ -1.91
CD44-236ENST00000533222 DEFB116Q30KQ4 102 aa3.14□□□□□ -1.91
CD44-236ENST00000533222 TYMSOSQ8TAI1 123 aa3.14□□□□□ -1.91
CD44-236ENST00000533222 SPRR1BP22528 89 aa3.13□□□□□ -1.91
CD44-236ENST00000533222 DEFB133Q30KQ1 61 aa3.13□□□□□ -1.91
CD44-236ENST00000533222 PSORS1C2Q9UIG4 136 aa3.13□□□□□ -1.91
CD44-236ENST00000533222 NOTCH3Q9UM47 2321 aa3.13□□□□□ -1.91
CD44-236ENST00000533222 A0A1B0GVY2 172 aa3.12□□□□□ -1.91
CD44-236ENST00000533222 DEFB1P60022 68 aa3.12□□□□□ -1.91
CD44-236ENST00000533222 KRTAP13-3Q3SY46 172 aa3.12□□□□□ -1.91
CD44-236ENST00000533222 DEFB119Q8N690 84 aa3.12□□□□□ -1.91
CD44-236ENST00000533222 C16orf74Q96GX8 76 aa3.12□□□□□ -1.91
CD44-236ENST00000533222 WNK1Q9H4A3 2382 aa3.11□□□□□ -1.91
CD44-236ENST00000533222 IGFL1Q6UW32 110 aa3.11□□□□□ -1.91
CD44-236ENST00000533222 MRPL34Q9BQ48 92 aaKnown RBP3.11□□□□□ -1.91
CD44-236ENST00000533222 CACNA1BQ00975 2339 aa3.11□□□□□ -1.91
CD44-236ENST00000533222 UNQ6190/PRO20217Q6UXQ8 127 aa3.1□□□□□ -1.91
CD44-236ENST00000533222 G3V318 75 aa3.09□□□□□ -1.91
CD44-236ENST00000533222 LY6EQ16553 131 aa3.09□□□□□ -1.91
CD44-236ENST00000533222 KRTAP10-3P60369 221 aa3.08□□□□□ -1.92
CD44-236ENST00000533222 PRO2289Q9P1D8 64 aa3.08□□□□□ -1.92
CD44-236ENST00000533222 CNOT1A5YKK6 2376 aaKnown RBP3.08□□□□□ -1.92
CD44-236ENST00000533222 SSBP3-AS1Q7Z2R9 100 aa3.06□□□□□ -1.92
CD44-236ENST00000533222 TPRP12270 2363 aaKnown RBP3.05□□□□□ -1.92
CD44-236ENST00000533222 CEP350Q5VT06 3117 aa3.05□□□□□ -1.92
CD44-236ENST00000533222 H0YAA0 97 aa3.05□□□□□ -1.92
CD44-236ENST00000533222 DEFB105AQ8NG35 78 aa3.05□□□□□ -1.92
CD44-236ENST00000533222 GIG44P09565 113 aaPredicted RBP3.04□□□□□ -1.92
CD44-236ENST00000533222 U3KQA8 63 aa3.04□□□□□ -1.92
CD44-236ENST00000533222 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.03□□□□□ -1.92
CD44-236ENST00000533222 Q6ZSA8 131 aa3.03□□□□□ -1.92
CD44-236ENST00000533222 SRCAPQ6ZRS2 3230 aa3.02□□□□□ -1.93
CD44-236ENST00000533222 TRIOBPQ9H2D6 2365 aa3.02□□□□□ -1.93
CD44-236ENST00000533222 PRO0255Q9UI72 69 aa3.02□□□□□ -1.93
CD44-236ENST00000533222 MGAQ8IWI9 3026 aa3.02□□□□□ -1.93
CD44-236ENST00000533222 HTN1P15515 57 aa3.01□□□□□ -1.93
CD44-236ENST00000533222 DEFB103AP81534 67 aa3.01□□□□□ -1.93
CD44-236ENST00000533222 CRIPTQ9P021 101 aa3.01□□□□□ -1.93
CD44-236ENST00000533222 CUL9Q8IWT3 2517 aa3.01□□□□□ -1.93
CD44-236ENST00000533222 SPTBN2O15020 2390 aa3.01□□□□□ -1.93
CD44-236ENST00000533222 FAM186AA6NE01 2351 aa3□□□□□ -1.93
CD44-236ENST00000533222 H1FX-AS1Q4G0G2 97 aa3□□□□□ -1.93
CD44-236ENST00000533222 LELP1Q5T871 98 aa3□□□□□ -1.93
CD44-236ENST00000533222 COL6A6A6NMZ7 2263 aa2.99□□□□□ -1.93
CD44-236ENST00000533222 KRTAP9-6A8MVA2 160 aa2.98□□□□□ -1.93
CD44-236ENST00000533222 KRTAP1-4P0C5Y4 121 aa2.98□□□□□ -1.93
CD44-236ENST00000533222 TPRXLQ17RH7 258 aa2.98□□□□□ -1.93
CD44-236ENST00000533222 LCE3EQ5T5B0 92 aa2.98□□□□□ -1.93
CD44-236ENST00000533222 PLAC4Q8WY50 150 aa2.98□□□□□ -1.93
CD44-236ENST00000533222 NOP10Q9NPE3 64 aaKnown RBP2.98□□□□□ -1.93
CD44-236ENST00000533222 PCNTO95613 3336 aa2.97□□□□□ -1.93
CD44-236ENST00000533222 INE1O15225 51 aa2.97□□□□□ -1.93
CD44-236ENST00000533222 CACNA1EQ15878 2313 aa2.97□□□□□ -1.93
CD44-236ENST00000533222 RPL37P61927 97 aaKnown RBP2.96□□□□□ -1.94
CD44-236ENST00000533222 C10orf99Q6UWK7 81 aa2.96□□□□□ -1.94
CD44-236ENST00000533222 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.96□□□□□ -1.94
CD44-236ENST00000533222 TNRC18O15417 2968 aaPredicted RBP2.95□□□□□ -1.94
CD44-236ENST00000533222 COL6A3P12111 3177 aa2.95□□□□□ -1.94
CD44-236ENST00000533222 GOLGB1Q14789 3259 aaKnown RBP2.95□□□□□ -1.94
CD44-236ENST00000533222 ACACAQ13085 2346 aa2.93□□□□□ -1.94
CD44-236ENST00000533222 H3BNG1 76 aa2.93□□□□□ -1.94
CD44-236ENST00000533222 K7EIL1 84 aa2.93□□□□□ -1.94
CD44-236ENST00000533222 PKDREJQ9NTG1 2253 aa2.93□□□□□ -1.94
CD44-236ENST00000533222 MAP1BP46821 2468 aaKnown RBP2.92□□□□□ -1.94
CD44-236ENST00000533222 LYNX1P0DP58 116 aa2.92□□□□□ -1.94
CD44-236ENST00000533222 IGF2RP11717 2491 aa2.91□□□□□ -1.94
CD44-236ENST00000533222 Q6ZRN7 208 aaPredicted RBP2.91□□□□□ -1.94
CD44-236ENST00000533222 CEP250Q9BV73 2442 aa2.91□□□□□ -1.94
CD44-236ENST00000533222 CENPFP49454 3210 aa2.91□□□□□ -1.94
CD44-236ENST00000533222 DEFB130BP0DP73 79 aa2.9□□□□□ -1.95
CD44-236ENST00000533222 DEFB130AP0DP74 79 aa2.9□□□□□ -1.95
CD44-236ENST00000533222 CHD7Q9P2D1 2997 aa2.89□□□□□ -1.95
CD44-236ENST00000533222 SPTA1P02549 2419 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms