RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ZNF22P17026 224 aaPredicted RBP2.8□□□□□ -1.96
CD44-226ENST00000527889 TSPEAR-AS2P59090 65 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 ESRGQ1W209 222 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 LYPD5Q6UWN5 251 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 SH2D6Q7Z4S9 175 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 WFDC10BQ8IUB3 73 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 KMT2AQ03164 3969 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 TMEM223A0PJW6 202 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 H3BNG1 76 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 K7ERJ3 54 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 M0R378 163 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 IGHV3-30P01768 117 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 IGHV3-33P01772 117 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 ANGP03950 147 aaKnown RBP2.79□□□□□ -1.96
CD44-226ENST00000527889 IGHV3-30-3P0DP02 117 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 IGHV3-30-5P0DP03 117 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 HERVK_113P61574 105 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 CXCL6P80162 114 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 LCE1AQ5T7P2 110 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 C2orf91Q6ZV80 131 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 LINC00269Q8N2A0 174 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 LINC00337Q8N6G1 96 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 C15orf53Q8NAA6 179 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 CDKN2A-AS1Q9UH64 79 aa2.79□□□□□ -1.96
CD44-226ENST00000527889 IGLV10-54A0A075B6I4 117 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 IGLV7-46A0A075B6I9 117 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.78□□□□□ -1.96
CD44-226ENST00000527889 TRBV7-7A0A0K0K1E9 115 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 LCE6AA0A183 80 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 LINC00959A0A1B0GUT2 108 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 ZNF815PA8K554 130 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 EPM2AB3EWF7 344 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 LEPROTO15243 131 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 INAFM2P0DMQ5 153 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 XCL1P47992 114 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 LINC00313P59037 77 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 ETDBQ3ZM63 59 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 DSCR8Q96T75 97 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 KLK12Q9UKR0 248 aa2.78□□□□□ -1.96
CD44-226ENST00000527889 MYMXA0A1B0GTQ4 84 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 CFC1BP0CG36 223 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 CFC1P0CG37 223 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 UBE2AP49459 152 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 REG3AQ06141 175 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 SS18Q15532 418 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 C7orf65Q6ZTY9 151 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 SCXQ7RTU7 201 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 C5orf38Q86SI9 138 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 UBE2WQ96B02 151 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 LINC00588Q9Y4M8 146 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 ALMS1Q8TCU4 4167 aa2.77□□□□□ -1.97
CD44-226ENST00000527889 CRPP02741 224 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 CCL18P55774 89 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 KIAA0087Q14695 138 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 ENHOQ6UWT2 76 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 TOMM7Q9P0U1 55 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 HIGD1BQ9P298 99 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 NDUFA12Q9UI09 145 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 APLNQ9ULZ1 77 aa2.76□□□□□ -1.97
CD44-226ENST00000527889 KLK5Q9Y337 293 aaPredicted RBP2.76□□□□□ -1.97
CD44-226ENST00000527889 RNF213Q63HN8 5207 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 A0A0J9YXY3 114 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 TIMM17BO60830 172 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 DNAH10OSP0CZ25 163 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 SMIM13P0DJ93 91 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 FUSP35637 526 aaKnown RBP eCLIP2.75□□□□□ -1.97
CD44-226ENST00000527889 CIRBPQ14011 172 aaKnown RBP2.75□□□□□ -1.97
CD44-226ENST00000527889 LINC01556Q5JQF7 62 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 PHF5AQ7RTV0 110 aaKnown RBP2.75□□□□□ -1.97
CD44-226ENST00000527889 UBE2DNLQ8IWF7 75 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 COX7B2Q8TF08 81 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 ZNF625Q96I27 306 aaPredicted RBP2.75□□□□□ -1.97
CD44-226ENST00000527889 PRR34Q9NV39 138 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 DNAH17Q9UFH2 4485 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 DNAH2Q9P225 4427 aa2.75□□□□□ -1.97
CD44-226ENST00000527889 IGKV2D-24A0A075B6R9 120 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 NUPR2A6NF83 97 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 NDUFA1O15239 70 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 TCL1BO95988 128 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 FXYD2P54710 66 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 WFDC2Q14508 124 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 MIAQ16674 131 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 LINC01554Q52M75 96 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 C2orf82Q6UX34 121 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 RMI2Q96E14 147 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 DHRS4-AS1Q9P1J3 65 aa2.74□□□□□ -1.97
CD44-226ENST00000527889 A0A1B0GW54 56 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 hADV29S1A0JD25 119 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 SPAG11BQ08648 103 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 HIGD2BQ4VC39 106 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 CASC10Q5T4H9 136 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 KRTAP26-1Q6PEX3 210 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 CEND1Q8N111 149 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 DAND5Q8N907 189 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 UPK3BQ9BT76 320 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 KRTAP1-5Q9BYS1 174 aa2.73□□□□□ -1.97
CD44-226ENST00000527889 FAT4Q6V0I7 4981 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 DMBT1Q9UGM3 2413 aaPredicted RBP2.72□□□□□ -1.97
CD44-226ENST00000527889 IBA57-AS1B1ANH7 110 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 HIST1H4AP62805 103 aaKnown RBP2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms