RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 NDUFA1O15239 70 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 SPAG11BQ08648 103 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 SYCNQ0VAF6 134 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 PYY3Q5JQD4 70 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 UNQ6190/PRO20217Q6UXQ8 127 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 SCGB1D4Q6XE38 83 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 PLEKHB2Q96CS7 222 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 VPS25Q9BRG1 176 aa2.84□□□□□ -1.95
USP48-211ENST00000526044 RYR2Q92736 4967 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 MYMXA0A1B0GTQ4 84 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 J3QQQ9 107 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 CHTF8P0CG12 524 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 LGALS3P17931 250 aaKnown RBP2.83□□□□□ -1.96
USP48-211ENST00000526044 CXCL5P42830 114 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 NMUP48645 174 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 CNBPP62633 177 aaKnown RBP2.83□□□□□ -1.96
USP48-211ENST00000526044 SFTA2Q6UW10 78 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 C2orf82Q6UX34 121 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 C9orf163Q8N9P6 203 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 VAMP8Q9BV40 100 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 NDUFA12Q9UI09 145 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 DNAH10Q8IVF4 4471 aa2.83□□□□□ -1.96
USP48-211ENST00000526044 IGKV2D-26A0A0A0MRZ7 120 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 IGHV6-1A0A0B4J1U7 121 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 TRBV30A0A0K0K1B3 111 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 DLEU1O43261 78 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 FUSP35637 526 aaKnown RBP eCLIP2.82□□□□□ -1.96
USP48-211ENST00000526044 KRTAP10-8P60410 259 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 CIRBPQ14011 172 aaKnown RBP2.82□□□□□ -1.96
USP48-211ENST00000526044 SPATA45Q537H7 98 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 Q6ZRU5 148 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 DPH3Q96FX2 82 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 ZNF625Q96I27 306 aaPredicted RBP2.82□□□□□ -1.96
USP48-211ENST00000526044 CARD19Q96LW7 228 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 C6orf48Q9UBA6 75 aa2.82□□□□□ -1.96
USP48-211ENST00000526044 LOC107984640A0A0U1RRK4 108 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 ZNF815PA8K554 130 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 LINC00158P58513 81 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 TSPEAR-AS2P59090 65 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 CXCL6P80162 114 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 COX17Q14061 63 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 PRR4Q16378 134 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 C9orf116Q5BN46 136 aaPredicted RBP2.81□□□□□ -1.96
USP48-211ENST00000526044 MEIG1Q5JSS6 88 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 SDIM1Q6ZPB5 146 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 PCP2Q8IVA1 136 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 ERG28Q9UKR5 140 aa2.81□□□□□ -1.96
USP48-211ENST00000526044 ZNF706Q9Y5V0 76 aaPredicted RBP2.81□□□□□ -1.96
USP48-211ENST00000526044 KMT2CQ8NEZ4 4911 aaKnown RBP2.81□□□□□ -1.96
USP48-211ENST00000526044 FRAS1Q86XX4 4008 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 A0A0J9YXY3 114 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 NDUFC2-KCTD14E9PQ53 114 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 TLX1NBP0CAT3 122 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 SMIM13P0DJ93 91 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 COX8AP10176 69 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 MP68P56378 58 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 C14orf144Q96I85 54 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 TTTY13Q9BZ97 58 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 ANAPC11Q9NYG5 84 aa2.8□□□□□ -1.96
USP48-211ENST00000526044 RYR3Q15413 4870 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 C16orf90A8MZG2 172 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 KRTAP4-16G5E9R7 235 aaPredicted RBP2.79□□□□□ -1.96
USP48-211ENST00000526044 TIMM17BO60830 172 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 DDTP30046 118 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 BATFQ16520 125 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 SLC25A34Q6PIV7 304 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 KRTAP11-1Q8IUC1 163 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 ANKRD29Q8N6D5 301 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 ANAPC13Q9BS18 74 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 LINC00474Q9P2X8 69 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 FAT2Q9NYQ8 4349 aa2.79□□□□□ -1.96
USP48-211ENST00000526044 DNAH11Q96DT5 4516 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 PKD1P98161 4303 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 IGLV8-61A0A075B6I0 122 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 IGKV2-24A0A0C4DH68 120 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 KRTAP10-1P60331 282 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 MIR7-3HGQ8N6C7 128 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 PRO1933Q9H354 126 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 SND1-IT1Q9HBX3 110 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 XAGE1AQ9HD64 81 aa2.78□□□□□ -1.96
USP48-211ENST00000526044 A0A096LNI7 61 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 INAFM2P0DMQ5 153 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 IFITM1P13164 125 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 NPC2P61916 151 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 MUSTN1Q8IVN3 82 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 DAND5Q8N907 189 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 COPS9Q8WXC6 57 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 MIEN1Q9BRT3 115 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 SPANXDQ9BXN6 97 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 SPANXCQ9NY87 97 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 HIGD1BQ9P298 99 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 UQCR10Q9UDW1 63 aa2.77□□□□□ -1.97
USP48-211ENST00000526044 LOC107984156A0A0G2JMH3 177 aa2.76□□□□□ -1.97
USP48-211ENST00000526044 A0A1W2PNN7 141 aa2.76□□□□□ -1.97
USP48-211ENST00000526044 PANO1I0J062 215 aa2.76□□□□□ -1.97
USP48-211ENST00000526044 J3KT08 172 aa2.76□□□□□ -1.97
USP48-211ENST00000526044 LINC00313P59037 77 aa2.76□□□□□ -1.97
USP48-211ENST00000526044 C9orf129Q5T035 196 aaKnown RBP2.76□□□□□ -1.97
USP48-211ENST00000526044 ARL17AQ8IVW1 177 aa2.76□□□□□ -1.97
USP48-211ENST00000526044 LINC00308Q8TCZ7 52 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms