RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 DNAJC13O75165 2243 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 CACNA1CQ13936 2221 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 SDK1Q7Z5N4 2213 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 A0A0D9SG42 100 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 LINC01546A6NGU7 62 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 IGIPA6NJ69 53 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 LYNX1G3V0Z9 82 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 H0YGX0 51 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 M0R1W7 72 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 PRH1P02810 166 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 KRTAP10-4P60372 401 aaPredicted RBP0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 TOMM5Q8N4H5 51 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 PRO3102Q9H379 93 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 ABRACLQ9P1F3 81 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 CDKN2A-AS1Q9UH64 79 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 CDC42BPAQ5VT25 1732 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 CACNA1GO43497 2377 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 IQGAP1P46940 1657 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 LMO7Q8WWI1 1683 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 TENM1Q9UKZ4 2725 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 F5P12259 2224 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 MED13LQ71F56 2210 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 SAMD9LQ8IVG5 1584 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 BAHCC1Q9P281 2608 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 NFAT5O94916 1531 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 SMIM27A0A1W2PRY6 76 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 H0YAA0 97 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 NDUFA3O95167 84 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 SPRR1AP35321 89 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 PRB3Q04118 309 aaPredicted RBP0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 MINOS1Q5TGZ0 78 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 DEFB105AQ8NG35 78 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 TMEM167BQ9NRX6 74 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 KIF21BO75037 1637 aa0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 FLG2Q5D862 2391 aaPredicted RBP0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 FCGBPQ9Y6R7 5405 aaPredicted RBP0.19□□□□□ -2.38
RNU4-54P-201ENST00000516428 DDX60Q8IY21 1712 aaKnown RBP0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 MUC6Q6W4X9 2439 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 MYO7AQ13402 2215 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 ASCC3Q8N3C0 2202 aaKnown RBP0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 TECTAO75443 2155 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 SPINK4O60575 86 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 IAPPP10997 89 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 SPRR1BP22528 89 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 CRIP1P50238 77 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 LINC00158P58513 81 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 H1FX-AS1Q4G0G2 97 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 WFDC13Q8IUB5 93 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 C6orf48Q9UBA6 75 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 APLNQ9ULZ1 77 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 ABCA1O95477 2261 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 DUOX1Q9NRD9 1551 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 CADP27708 2225 aa0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 RP1L1Q8IWN7 2480 aaPredicted RBP0.18□□□□□ -2.38
RNU4-54P-201ENST00000516428 CLTCL1P53675 1640 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 H3BUA1 57 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 DEFB109BQ30KR1 87 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 LINC00308Q8TCZ7 52 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 FAM208BQ5VWN6 2430 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 GCC2Q8IWJ2 1684 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 SORL1Q92673 2214 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 ASXL3Q9C0F0 2248 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 AHNAK2Q8IVF2 5795 aa0.17□□□□□ -2.38
RNU4-54P-201ENST00000516428 MROH2BQ7Z745 1585 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 TNCP24821 2201 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 LOC730098B7Z3J9 87 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 NDUFA1O15239 70 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 DEFB130BP0DP73 79 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 DEFB130AP0DP74 79 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 RPS27P42677 84 aaKnown RBP0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 WT1-ASQ06250 92 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 KLK9Q2XQG4 91 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 LELP1Q5T871 98 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 SPINK6Q6UWN8 80 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 RPS27LQ71UM5 84 aaKnown RBP0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 SMIM2Q9BVW6 85 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 TIMM8BQ9Y5J9 83 aaPredicted RBP0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 URB1O60287 2271 aaKnown RBP0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 BPTFQ12830 3046 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 NAV3Q8IVL0 2385 aa0.16□□□□□ -2.38
RNU4-54P-201ENST00000516428 ROS1P08922 2347 aa0.15□□□□□ -2.38
RNU4-54P-201ENST00000516428 CACNA1EQ15878 2313 aa0.15□□□□□ -2.38
RNU4-54P-201ENST00000516428 IGLV5-48A0A075B6I7 105 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 H0YGG7 62 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 SPINK1P00995 79 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 DEFB131AP59861 70 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 SNRPGP62308 76 aaKnown RBP0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 PRLHP81277 87 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 DEFB106AQ8N104 65 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 SMR3AQ99954 134 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 NOP10Q9NPE3 64 aaKnown RBP0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 S4R3F8 94 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 KNTC1P50748 2209 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 TENM3Q9P273 2699 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 JMJD1CQ15652 2540 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 COL6A6A6NMZ7 2263 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 AHCTF1Q8WYP5 2266 aa0.15□□□□□ -2.39
RNU4-54P-201ENST00000516428 HELZ2Q9BYK8 2649 aaKnown RBP0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 M0QY20 66 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 M0R2T5 61 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms