RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 EIF4EBP3O60516 100 aaPredicted RBP5.37□□□□□ -1.55
LIMCH1-219ENST00000514096 NDUFC1O43677 76 aa5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 RNF185Q96GF1 192 aa5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 C16orf90A8MZG2 172 aa5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 SMR3BP02814 79 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 MP68P56378 58 aa5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 ATP5EP56381 51 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 TMEM254Q8TBM7 123 aa5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 LENEPQ9Y5L5 61 aa5.36□□□□□ -1.55
LIMCH1-219ENST00000514096 SDHAF1A6NFY7 115 aa5.35□□□□□ -1.55
LIMCH1-219ENST00000514096 RYR2Q92736 4967 aa5.35□□□□□ -1.55
LIMCH1-219ENST00000514096 TRAV22A0A0B4J277 110 aa5.35□□□□□ -1.55
LIMCH1-219ENST00000514096 A8MTW9 85 aa5.35□□□□□ -1.55
LIMCH1-219ENST00000514096 HIGD2BQ4VC39 106 aa5.35□□□□□ -1.55
LIMCH1-219ENST00000514096 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-219ENST00000514096 IGKV2-29A2NJV5 120 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-219ENST00000514096 LEPROTO15243 131 aa5.34□□□□□ -1.55
LIMCH1-219ENST00000514096 CRPP02741 224 aa5.34□□□□□ -1.55
LIMCH1-219ENST00000514096 DMBT1Q9UGM3 2413 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-219ENST00000514096 TOMM7Q9P0U1 55 aa5.34□□□□□ -1.55
LIMCH1-219ENST00000514096 RTL8CO15255 209 aa5.33□□□□□ -1.56
LIMCH1-219ENST00000514096 NREPQ16612 68 aa5.33□□□□□ -1.56
LIMCH1-219ENST00000514096 MIR7-3HGQ8N6C7 128 aa5.33□□□□□ -1.56
LIMCH1-219ENST00000514096 TOMM6Q96B49 74 aa5.33□□□□□ -1.56
LIMCH1-219ENST00000514096 SYCNQ0VAF6 134 aa5.32□□□□□ -1.56
LIMCH1-219ENST00000514096 SUMO4Q6EEV6 95 aa5.32□□□□□ -1.56
LIMCH1-219ENST00000514096 C7orf65Q6ZTY9 151 aa5.32□□□□□ -1.56
LIMCH1-219ENST00000514096 HIGD2AQ9BW72 106 aa5.32□□□□□ -1.56
LIMCH1-219ENST00000514096 KIAA1109Q2LD37 5005 aa5.32□□□□□ -1.56
LIMCH1-219ENST00000514096 PRYO14603 147 aa5.32□□□□□ -1.56
LIMCH1-219ENST00000514096 C9orf129Q5T035 196 aaKnown RBP5.32□□□□□ -1.56
LIMCH1-219ENST00000514096 RETNLBQ9BQ08 111 aa5.31□□□□□ -1.56
LIMCH1-219ENST00000514096 DNAH1Q9P2D7 4330 aa5.31□□□□□ -1.56
LIMCH1-219ENST00000514096 TRBV10-1A0A0K0K1A3 114 aa5.31□□□□□ -1.56
LIMCH1-219ENST00000514096 KRTAP10-2P60368 255 aa5.3□□□□□ -1.56
LIMCH1-219ENST00000514096 FAM218AQ96MZ4 157 aa5.3□□□□□ -1.56
LIMCH1-219ENST00000514096 KLKP1Q107X0 134 aa5.3□□□□□ -1.56
LIMCH1-219ENST00000514096 MIAQ16674 131 aa5.3□□□□□ -1.56
LIMCH1-219ENST00000514096 LINC01554Q52M75 96 aa5.3□□□□□ -1.56
LIMCH1-219ENST00000514096 C6orf99Q4VX62 202 aa5.29□□□□□ -1.56
LIMCH1-219ENST00000514096 ORMDL1Q9P0S3 153 aa5.29□□□□□ -1.56
LIMCH1-219ENST00000514096 DNAH10Q8IVF4 4471 aa5.29□□□□□ -1.56
LIMCH1-219ENST00000514096 TRBV6-4A0A1B0GX49 114 aa5.28□□□□□ -1.56
LIMCH1-219ENST00000514096 LINC00158P58513 81 aa5.28□□□□□ -1.56
LIMCH1-219ENST00000514096 Q6ZRP5 223 aa5.28□□□□□ -1.56
LIMCH1-219ENST00000514096 Q8N9L7 120 aa5.28□□□□□ -1.56
LIMCH1-219ENST00000514096 IGLV4-69A0A075B6H9 119 aa5.28□□□□□ -1.56
LIMCH1-219ENST00000514096 LINC00313P59037 77 aa5.28□□□□□ -1.56
LIMCH1-219ENST00000514096 A0A087WYN8 130 aa5.27□□□□□ -1.57
LIMCH1-219ENST00000514096 IGKV2-24A0A0C4DH68 120 aa5.27□□□□□ -1.57
LIMCH1-219ENST00000514096 BPY2O14599 106 aa5.27□□□□□ -1.57
LIMCH1-219ENST00000514096 C1orf64Q8NEQ6 169 aa5.27□□□□□ -1.57
LIMCH1-219ENST00000514096 FAM30AQ9NZY2 134 aa5.27□□□□□ -1.57
LIMCH1-219ENST00000514096 VPS13DQ5THJ4 4388 aa5.27□□□□□ -1.57
LIMCH1-219ENST00000514096 LINC00612Q8N6U2 182 aa5.27□□□□□ -1.57
LIMCH1-219ENST00000514096 IGLV4-60A0A075B6I1 120 aa5.26□□□□□ -1.57
LIMCH1-219ENST00000514096 TRBV6-8A0A0A6YYG3 113 aa5.26□□□□□ -1.57
LIMCH1-219ENST00000514096 LELP1Q5T871 98 aa5.26□□□□□ -1.57
LIMCH1-219ENST00000514096 IGLV5-52A0A0A0MRZ9 124 aa5.25□□□□□ -1.57
LIMCH1-219ENST00000514096 ATP5EP2Q5VTU8 51 aa5.25□□□□□ -1.57
LIMCH1-219ENST00000514096 NTM-AS1Q6ZSK4 140 aa5.25□□□□□ -1.57
LIMCH1-219ENST00000514096 TRBV6-1A0A0K0K1D8 114 aa5.25□□□□□ -1.57
LIMCH1-219ENST00000514096 M0QY20 66 aa5.25□□□□□ -1.57
LIMCH1-219ENST00000514096 ATP11AUNQ6ZP68 121 aa5.25□□□□□ -1.57
LIMCH1-219ENST00000514096 J3QL48 77 aa5.24□□□□□ -1.57
LIMCH1-219ENST00000514096 LINC00308Q8TCZ7 52 aa5.24□□□□□ -1.57
LIMCH1-219ENST00000514096 DIRC1Q969H9 104 aa5.24□□□□□ -1.57
LIMCH1-219ENST00000514096 EPM2AB3EWF7 344 aa5.24□□□□□ -1.57
LIMCH1-219ENST00000514096 PKHD1P08F94 4074 aa5.24□□□□□ -1.57
LIMCH1-219ENST00000514096 LINC00467Q9BRT7 94 aa5.24□□□□□ -1.57
LIMCH1-219ENST00000514096 Q6ZR54 194 aa5.23□□□□□ -1.57
LIMCH1-219ENST00000514096 LINC01547P58512 204 aaPredicted RBP5.22□□□□□ -1.57
LIMCH1-219ENST00000514096 COX7B2Q8TF08 81 aa5.22□□□□□ -1.57
LIMCH1-219ENST00000514096 TSHBP01222 138 aa5.22□□□□□ -1.57
LIMCH1-219ENST00000514096 A0A087WTM6 91 aa5.21□□□□□ -1.58
LIMCH1-219ENST00000514096 C9orf116Q5BN46 136 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-219ENST00000514096 SND1-IT1Q9HBX3 110 aa5.21□□□□□ -1.58
LIMCH1-219ENST00000514096 CXCL6P80162 114 aa5.21□□□□□ -1.58
LIMCH1-219ENST00000514096 ADM2Q7Z4H4 148 aa5.21□□□□□ -1.58
LIMCH1-219ENST00000514096 AMELXQ99217 191 aa5.2□□□□□ -1.58
LIMCH1-219ENST00000514096 IBA57-AS1B1ANH7 110 aa5.2□□□□□ -1.58
LIMCH1-219ENST00000514096 JMJD7-PLA2G4BH0Y9G9 81 aa5.2□□□□□ -1.58
LIMCH1-219ENST00000514096 CHTF8P0CG12 524 aa5.2□□□□□ -1.58
LIMCH1-219ENST00000514096 KIF25-AS1Q9Y6Z4 181 aa5.2□□□□□ -1.58
LIMCH1-219ENST00000514096 hDV103S1A0JD37 113 aa5.2□□□□□ -1.58
LIMCH1-219ENST00000514096 IGIPA6NJ69 53 aa5.19□□□□□ -1.58
LIMCH1-219ENST00000514096 LINC01556Q5JQF7 62 aa5.19□□□□□ -1.58
LIMCH1-219ENST00000514096 SMIM11BQ8TCY0 68 aa5.19□□□□□ -1.58
LIMCH1-219ENST00000514096 H3BNG1 76 aa5.19□□□□□ -1.58
LIMCH1-219ENST00000514096 CASC2Q6XLA1 102 aa5.19□□□□□ -1.58
LIMCH1-219ENST00000514096 H0YGX0 51 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 KRTAP10-1P60331 282 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 REG3GQ6UW15 175 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 DNAH2Q9P225 4427 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 Q1T7F1 81 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 C20orf203Q8NBC4 194 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 CDKN2A-AS1Q9UH64 79 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 LINC01600Q96MT4 127 aa5.18□□□□□ -1.58
LIMCH1-219ENST00000514096 CHCHD10Q8WYQ3 142 aaPredicted RBP5.17□□□□□ -1.58
LIMCH1-219ENST00000514096 COX6A2Q02221 97 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms