RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 POLQO75417 2590 aa6.84□□□□□ -1.31
LIMCH1-203ENST00000396595 MRPL34Q9BQ48 92 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-203ENST00000396595 ACANP16112 2415 aa6.83□□□□□ -1.32
LIMCH1-203ENST00000396595 ANKRD17O75179 2603 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-203ENST00000396595 RTL8CO15255 209 aa6.83□□□□□ -1.32
LIMCH1-203ENST00000396595 IGLV1-50A0A075B6I6 118 aa6.83□□□□□ -1.32
LIMCH1-203ENST00000396595 CENPFP49454 3210 aa6.82□□□□□ -1.32
LIMCH1-203ENST00000396595 CSNK1G2-AS1Q8NCQ2 148 aa6.82□□□□□ -1.32
LIMCH1-203ENST00000396595 SPANXA2-OT1Q8N9U9 137 aa6.81□□□□□ -1.32
LIMCH1-203ENST00000396595 CHTF8P0CG12 524 aa6.81□□□□□ -1.32
LIMCH1-203ENST00000396595 TYMSOSQ8TAI1 123 aa6.8□□□□□ -1.32
LIMCH1-203ENST00000396595 PRR34Q9NV39 138 aa6.8□□□□□ -1.32
LIMCH1-203ENST00000396595 FAM168BA1KXE4 195 aa6.8□□□□□ -1.32
LIMCH1-203ENST00000396595 FASNP49327 2511 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-203ENST00000396595 PCSK5Q92824 1860 aa6.79□□□□□ -1.32
LIMCH1-203ENST00000396595 Q5XG85 94 aa6.79□□□□□ -1.32
LIMCH1-203ENST00000396595 IGFL1Q6UW32 110 aa6.78□□□□□ -1.32
LIMCH1-203ENST00000396595 KRTAP24-1Q3LI83 254 aa6.78□□□□□ -1.32
LIMCH1-203ENST00000396595 PRAC1Q96KF2 57 aa6.78□□□□□ -1.32
LIMCH1-203ENST00000396595 Q75L30 129 aa6.78□□□□□ -1.32
LIMCH1-203ENST00000396595 Q8N377 158 aa6.76□□□□□ -1.33
LIMCH1-203ENST00000396595 Q96NJ1 140 aa6.76□□□□□ -1.33
LIMCH1-203ENST00000396595 C8orf17Q9NRJ1 99 aa6.76□□□□□ -1.33
LIMCH1-203ENST00000396595 DMAC1Q96GE9 116 aa6.75□□□□□ -1.33
LIMCH1-203ENST00000396595 C15orf56Q8N910 161 aa6.75□□□□□ -1.33
LIMCH1-203ENST00000396595 LINC00612Q8N6U2 182 aa6.74□□□□□ -1.33
LIMCH1-203ENST00000396595 FAM104AQ969W3 186 aa6.73□□□□□ -1.33
LIMCH1-203ENST00000396595 PLA2G2DQ9UNK4 145 aa6.73□□□□□ -1.33
LIMCH1-203ENST00000396595 A0A0D9SG42 100 aa6.73□□□□□ -1.33
LIMCH1-203ENST00000396595 BRCA2P51587 3418 aa6.73□□□□□ -1.33
LIMCH1-203ENST00000396595 TLX1NBP0CAT3 122 aa6.72□□□□□ -1.33
LIMCH1-203ENST00000396595 A0A1B0GVX0 72 aa6.72□□□□□ -1.33
LIMCH1-203ENST00000396595 GIG44P09565 113 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-203ENST00000396595 C19orf73Q9NVV2 129 aa6.71□□□□□ -1.34
LIMCH1-203ENST00000396595 CSAG1Q6PB30 78 aa6.71□□□□□ -1.34
LIMCH1-203ENST00000396595 LINC00483Q53H64 154 aa6.7□□□□□ -1.34
LIMCH1-203ENST00000396595 KRTAP16-1A8MUX0 517 aa6.68□□□□□ -1.34
LIMCH1-203ENST00000396595 ZNF861PO60384 105 aa6.68□□□□□ -1.34
LIMCH1-203ENST00000396595 DSCR10P59022 87 aa6.68□□□□□ -1.34
LIMCH1-203ENST00000396595 C9orf163Q8N9P6 203 aa6.68□□□□□ -1.34
LIMCH1-203ENST00000396595 DNAH12Q6ZR08 3092 aa6.67□□□□□ -1.34
LIMCH1-203ENST00000396595 A0A1W2PNM2 257 aa6.66□□□□□ -1.34
LIMCH1-203ENST00000396595 A0A096LNT2 108 aa6.66□□□□□ -1.34
LIMCH1-203ENST00000396595 OBSCN-AS1Q96MR7 158 aa6.65□□□□□ -1.34
LIMCH1-203ENST00000396595 FAM229BQ4G0N7 80 aa6.64□□□□□ -1.35
LIMCH1-203ENST00000396595 FP248Q71RG6 208 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-203ENST00000396595 A0A0G2JQZ4 141 aa6.64□□□□□ -1.35
LIMCH1-203ENST00000396595 A0A1W2PNN7 141 aa6.64□□□□□ -1.35
LIMCH1-203ENST00000396595 IGLV5-48A0A075B6I7 105 aa6.63□□□□□ -1.35
LIMCH1-203ENST00000396595 USP24Q9UPU5 2620 aa6.63□□□□□ -1.35
LIMCH1-203ENST00000396595 WWC2-AS2Q96NR7 200 aa6.62□□□□□ -1.35
LIMCH1-203ENST00000396595 LINC01558Q9Y6Z2 57 aa6.62□□□□□ -1.35
LIMCH1-203ENST00000396595 KRTAP10-11P60412 298 aa6.62□□□□□ -1.35
LIMCH1-203ENST00000396595 K7EIL1 84 aa6.61□□□□□ -1.35
LIMCH1-203ENST00000396595 LINC00304Q8N9R0 145 aa6.61□□□□□ -1.35
LIMCH1-203ENST00000396595 CEP350Q5VT06 3117 aa6.6□□□□□ -1.35
LIMCH1-203ENST00000396595 PRR26Q8N8Z3 221 aa6.6□□□□□ -1.35
LIMCH1-203ENST00000396595 EPG5Q9HCE0 2579 aa6.6□□□□□ -1.35
LIMCH1-203ENST00000396595 A0A087WTM6 91 aa6.6□□□□□ -1.35
LIMCH1-203ENST00000396595 Q5VV11 94 aa6.59□□□□□ -1.35
LIMCH1-203ENST00000396595 SPRR4Q96PI1 79 aa6.59□□□□□ -1.35
LIMCH1-203ENST00000396595 OCR1Q9BZK8 76 aa6.59□□□□□ -1.35
LIMCH1-203ENST00000396595 IGLV5-37A0A075B6J1 123 aa6.59□□□□□ -1.35
LIMCH1-203ENST00000396595 Q8N9P0 234 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-203ENST00000396595 CNBPP62633 177 aaKnown RBP6.59□□□□□ -1.36
LIMCH1-203ENST00000396595 A0A1B0GU33 70 aa6.58□□□□□ -1.36
LIMCH1-203ENST00000396595 IGLV7-46A0A075B6I9 117 aa6.57□□□□□ -1.36
LIMCH1-203ENST00000396595 SPINK7P58062 85 aa6.57□□□□□ -1.36
LIMCH1-203ENST00000396595 KRTAP10-3P60369 221 aa6.57□□□□□ -1.36
LIMCH1-203ENST00000396595 CAMK2N1Q7Z7J9 78 aa6.57□□□□□ -1.36
LIMCH1-203ENST00000396595 IGLV7-43P04211 117 aa6.57□□□□□ -1.36
LIMCH1-203ENST00000396595 ZNF575Q86XF7 245 aa6.57□□□□□ -1.36
LIMCH1-203ENST00000396595 HTTP42858 3142 aa6.56□□□□□ -1.36
LIMCH1-203ENST00000396595 PSORS1C2Q9UIG4 136 aa6.55□□□□□ -1.36
LIMCH1-203ENST00000396595 MGAM2Q2M2H8 2515 aa6.55□□□□□ -1.36
LIMCH1-203ENST00000396595 ANAPC11Q9NYG5 84 aa6.55□□□□□ -1.36
LIMCH1-203ENST00000396595 CASC10Q5T4H9 136 aa6.54□□□□□ -1.36
LIMCH1-203ENST00000396595 Q8N1X5 172 aa6.54□□□□□ -1.36
LIMCH1-203ENST00000396595 PRRC2CQ9Y520 2896 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-203ENST00000396595 C9orf92A6NGG3 77 aa6.52□□□□□ -1.37
LIMCH1-203ENST00000396595 MKI67P46013 3256 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-203ENST00000396595 CR1P17927 2039 aa6.5□□□□□ -1.37
LIMCH1-203ENST00000396595 ASB16-AS1Q495Z4 193 aa6.49□□□□□ -1.37
LIMCH1-203ENST00000396595 CYSTM1Q9H1C7 97 aa6.49□□□□□ -1.37
LIMCH1-203ENST00000396595 FLNBO75369 2602 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-203ENST00000396595 COX6B2Q6YFQ2 88 aa6.47□□□□□ -1.37
LIMCH1-203ENST00000396595 BPTFQ12830 3046 aa6.47□□□□□ -1.37
LIMCH1-203ENST00000396595 LAMA2P24043 3122 aaKnown RBP6.46□□□□□ -1.37
LIMCH1-203ENST00000396595 LAMA3Q16787 3333 aa6.46□□□□□ -1.37
LIMCH1-203ENST00000396595 KRTAP1-3Q8IUG1 177 aa6.45□□□□□ -1.38
LIMCH1-203ENST00000396595 J3QL48 77 aa6.45□□□□□ -1.38
LIMCH1-203ENST00000396595 OXTP01178 125 aa6.45□□□□□ -1.38
LIMCH1-203ENST00000396595 HECTD1Q9ULT8 2610 aa6.44□□□□□ -1.38
LIMCH1-203ENST00000396595 ROMO1P60602 79 aa6.44□□□□□ -1.38
LIMCH1-203ENST00000396595 HRES1P13985 223 aa6.43□□□□□ -1.38
LIMCH1-203ENST00000396595 KRTAP1-1Q07627 177 aa6.43□□□□□ -1.38
LIMCH1-203ENST00000396595 SMR3BP02814 79 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-203ENST00000396595 ATRQ13535 2644 aa6.39□□□□□ -1.39
LIMCH1-203ENST00000396595 MAST4O15021 2626 aa6.39□□□□□ -1.39
LIMCH1-203ENST00000396595 MMP24-AS1A0A0U1RRL7 71 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms