RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 UBE2WQ96B02 151 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 Q9H8V8 135 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 DNAH5Q8TE73 4624 aa6.84□□□□□ -1.31
SS18-221ENST00000582448 IGLV10-54A0A075B6I4 117 aa6.84□□□□□ -1.31
SS18-221ENST00000582448 TIMM17BO60830 172 aa6.84□□□□□ -1.31
SS18-221ENST00000582448 FUSP35637 526 aaKnown RBP eCLIP6.84□□□□□ -1.31
SS18-221ENST00000582448 LINC01556Q5JQF7 62 aa6.84□□□□□ -1.31
SS18-221ENST00000582448 MEIG1Q5JSS6 88 aa6.84□□□□□ -1.31
SS18-221ENST00000582448 CFAP161Q6P656 301 aa6.84□□□□□ -1.31
SS18-221ENST00000582448 PRR34Q9NV39 138 aa6.84□□□□□ -1.31
SS18-221ENST00000582448 CKS1BP61024 79 aa6.83□□□□□ -1.32
SS18-221ENST00000582448 RPL24P83731 157 aaKnown RBP6.83□□□□□ -1.32
SS18-221ENST00000582448 C10orf126Q8N4M7 172 aa6.83□□□□□ -1.32
SS18-221ENST00000582448 HERC1Q15751 4861 aa6.83□□□□□ -1.32
SS18-221ENST00000582448 APOBP04114 4563 aaKnown RBP6.83□□□□□ -1.32
SS18-221ENST00000582448 PRYO14603 147 aa6.82□□□□□ -1.32
SS18-221ENST00000582448 IFITM1P13164 125 aa6.82□□□□□ -1.32
SS18-221ENST00000582448 CXCL5P42830 114 aa6.82□□□□□ -1.32
SS18-221ENST00000582448 Q8IZM0 81 aa6.82□□□□□ -1.32
SS18-221ENST00000582448 NHP2Q9NX24 153 aaKnown RBP6.82□□□□□ -1.32
SS18-221ENST00000582448 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.81□□□□□ -1.32
SS18-221ENST00000582448 A0A1B0GV90 55 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 DNAH10OSP0CZ25 163 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 FXYD2P54710 66 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 ENHOQ6UWT2 76 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 RMI2Q96E14 147 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 SPANXDQ9BXN6 97 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 KRTAP1-5Q9BYS1 174 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 SPANXCQ9NY87 97 aa6.81□□□□□ -1.32
SS18-221ENST00000582448 K7EP13 123 aa6.8□□□□□ -1.32
SS18-221ENST00000582448 TTC32Q5I0X7 151 aa6.8□□□□□ -1.32
SS18-221ENST00000582448 ZNF625Q96I27 306 aaPredicted RBP6.8□□□□□ -1.32
SS18-221ENST00000582448 MUSTN1Q8IVN3 82 aa6.79□□□□□ -1.32
SS18-221ENST00000582448 RAB37Q96AX2 223 aa6.79□□□□□ -1.32
SS18-221ENST00000582448 UPK3BQ9BT76 320 aa6.79□□□□□ -1.32
SS18-221ENST00000582448 IBA57-AS1B1ANH7 110 aa6.78□□□□□ -1.32
SS18-221ENST00000582448 TAX1BP3O14907 124 aa6.78□□□□□ -1.32
SS18-221ENST00000582448 LINC00158P58513 81 aa6.78□□□□□ -1.32
SS18-221ENST00000582448 Q5VSD8 79 aa6.78□□□□□ -1.32
SS18-221ENST00000582448 IGKV2D-24A0A075B6R9 120 aa6.77□□□□□ -1.33
SS18-221ENST00000582448 SMR3BP02814 79 aaPredicted RBP6.77□□□□□ -1.33
SS18-221ENST00000582448 XGP55808 180 aa6.77□□□□□ -1.33
SS18-221ENST00000582448 SPAG11BQ08648 103 aa6.77□□□□□ -1.33
SS18-221ENST00000582448 VAMP3Q15836 100 aa6.77□□□□□ -1.33
SS18-221ENST00000582448 LITAFQ99732 161 aa6.77□□□□□ -1.33
SS18-221ENST00000582448 A0A0U1RRA0 63 aa6.76□□□□□ -1.33
SS18-221ENST00000582448 A0A1B0GWB2 263 aa6.76□□□□□ -1.33
SS18-221ENST00000582448 A4D1N5 150 aa6.76□□□□□ -1.33
SS18-221ENST00000582448 K7ERJ3 54 aa6.76□□□□□ -1.33
SS18-221ENST00000582448 ADAMTSL4-AS1Q5T5F5 129 aa6.76□□□□□ -1.33
SS18-221ENST00000582448 H3BUT2 72 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 FABP2P12104 132 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 NPC2P61916 151 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 COX17Q14061 63 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 LYRM7Q5U5X0 104 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 LINC00308Q8TCZ7 52 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 PPDPFQ9H3Y8 114 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 Q9HAA7 133 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 PRO1854Q9UHT4 67 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 ERG28Q9UKR5 140 aa6.75□□□□□ -1.33
SS18-221ENST00000582448 A0A0B4J2C4 111 aa6.74□□□□□ -1.33
SS18-221ENST00000582448 PFN2P35080 140 aa6.74□□□□□ -1.33
SS18-221ENST00000582448 HAMPP81172 84 aa6.74□□□□□ -1.33
SS18-221ENST00000582448 GTF2H5Q6ZYL4 71 aa6.74□□□□□ -1.33
SS18-221ENST00000582448 DAND5Q8N907 189 aa6.74□□□□□ -1.33
SS18-221ENST00000582448 MPLKIPQ8TAP9 179 aa6.74□□□□□ -1.33
SS18-221ENST00000582448 A0A1W2PPM0 123 aa6.73□□□□□ -1.33
SS18-221ENST00000582448 F8WDY8 70 aa6.73□□□□□ -1.33
SS18-221ENST00000582448 KRTAP10-1P60331 282 aa6.73□□□□□ -1.33
SS18-221ENST00000582448 Q1RN00 199 aa6.73□□□□□ -1.33
SS18-221ENST00000582448 MIR7-3HGQ8N6C7 128 aa6.73□□□□□ -1.33
SS18-221ENST00000582448 CFC1BP0CG36 223 aa6.72□□□□□ -1.33
SS18-221ENST00000582448 CFC1P0CG37 223 aa6.72□□□□□ -1.33
SS18-221ENST00000582448 KIAA0087Q14695 138 aa6.72□□□□□ -1.33
SS18-221ENST00000582448 C2orf82Q6UX34 121 aa6.72□□□□□ -1.33
SS18-221ENST00000582448 CAMK2N2Q96S95 79 aa6.72□□□□□ -1.33
SS18-221ENST00000582448 DMBT1Q9UGM3 2413 aaPredicted RBP6.71□□□□□ -1.33
SS18-221ENST00000582448 GAGE10A6NGK3 116 aa6.71□□□□□ -1.34
SS18-221ENST00000582448 PSMB2P49721 201 aa6.71□□□□□ -1.34
SS18-221ENST00000582448 Q6ZRN7 208 aaPredicted RBP6.71□□□□□ -1.34
SS18-221ENST00000582448 C2orf48Q96LS8 159 aa6.71□□□□□ -1.34
SS18-221ENST00000582448 TRBV30A0A0K0K1B3 111 aa6.7□□□□□ -1.34
SS18-221ENST00000582448 SND1-IT1Q9HBX3 110 aa6.7□□□□□ -1.34
SS18-221ENST00000582448 FAT1Q14517 4588 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 GVQW2A0A096LPI5 108 aaPredicted RBP6.69□□□□□ -1.34
SS18-221ENST00000582448 TRAV13-2A0A0B4J235 113 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 LOC107984156A0A0G2JMH3 177 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 H7C2G1 150 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 PSCAO43653 123 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 TSPAN13O95857 204 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 COX6CP09669 75 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 SCGB1C2P0DMR2 95 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 UBE2V1Q13404 147 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 HIGD2BQ4VC39 106 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 KRTAP26-1Q6PEX3 210 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 UNQ6190/PRO20217Q6UXQ8 127 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 ARL17AQ8IVW1 177 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 NAA38Q9BRA0 125 aaKnown RBP6.69□□□□□ -1.34
SS18-221ENST00000582448 SPCS1Q9Y6A9 102 aa6.69□□□□□ -1.34
SS18-221ENST00000582448 FLG2Q5D862 2391 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms