RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 C11orf44Q8N8P7 122 aa6.62□□□□□ -1.35
CTNNA1-243ENST00000540387 K7EQG2 157 aa6.61□□□□□ -1.35
CTNNA1-243ENST00000540387 DAD1P61803 113 aa6.61□□□□□ -1.35
CTNNA1-243ENST00000540387 Q6ZQT0 140 aa6.61□□□□□ -1.35
CTNNA1-243ENST00000540387 Q8N814 137 aa6.61□□□□□ -1.35
CTNNA1-243ENST00000540387 M0R2N4 97 aa6.61□□□□□ -1.35
CTNNA1-243ENST00000540387 C6orf223Q8N319 242 aa6.61□□□□□ -1.35
CTNNA1-243ENST00000540387 FUSP35637 526 aaKnown RBP eCLIP6.6□□□□□ -1.35
CTNNA1-243ENST00000540387 Q6ZTC4 211 aa6.6□□□□□ -1.35
CTNNA1-243ENST00000540387 C18orf65Q6ZTR6 163 aa6.6□□□□□ -1.35
CTNNA1-243ENST00000540387 CXCL6P80162 114 aa6.6□□□□□ -1.35
CTNNA1-243ENST00000540387 HTN1P15515 57 aa6.59□□□□□ -1.35
CTNNA1-243ENST00000540387 UBE2E2Q96LR5 201 aa6.59□□□□□ -1.35
CTNNA1-243ENST00000540387 PRYO14603 147 aa6.59□□□□□ -1.35
CTNNA1-243ENST00000540387 KHDC1LQ5JSQ8 128 aa6.59□□□□□ -1.35
CTNNA1-243ENST00000540387 COX7B2Q8TF08 81 aa6.59□□□□□ -1.35
CTNNA1-243ENST00000540387 C11orf68Q9H3H3 251 aaKnown RBP6.59□□□□□ -1.35
CTNNA1-243ENST00000540387 TRBV10-1A0A0K0K1A3 114 aa6.58□□□□□ -1.36
CTNNA1-243ENST00000540387 TRBV6-4A0A1B0GX49 114 aa6.58□□□□□ -1.36
CTNNA1-243ENST00000540387 ERC2-IT1O76042 136 aa6.58□□□□□ -1.36
CTNNA1-243ENST00000540387 DYNLRB2Q8TF09 96 aa6.58□□□□□ -1.36
CTNNA1-243ENST00000540387 TOMM7Q9P0U1 55 aa6.58□□□□□ -1.36
CTNNA1-243ENST00000540387 SORL1Q92673 2214 aa6.58□□□□□ -1.36
CTNNA1-243ENST00000540387 DEFB136Q30KP8 78 aa6.57□□□□□ -1.36
CTNNA1-243ENST00000540387 WNK1Q9H4A3 2382 aa6.57□□□□□ -1.36
CTNNA1-243ENST00000540387 LOC110117498A0A087WWA1 95 aa6.57□□□□□ -1.36
CTNNA1-243ENST00000540387 MRPL55Q7Z7F7 128 aaKnown RBP6.57□□□□□ -1.36
CTNNA1-243ENST00000540387 KRTAP10-3P60369 221 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 Q6ZRP5 223 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 SCXQ7RTU7 201 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 LRCOL1A6NCL2 159 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 BPY2O14599 106 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 IGHV3-53P01767 116 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 PRM2P04554 102 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 Q1T7F1 81 aa6.56□□□□□ -1.36
CTNNA1-243ENST00000540387 TENM1Q9UKZ4 2725 aa6.55□□□□□ -1.36
CTNNA1-243ENST00000540387 CDC42SE2Q9NRR3 84 aa6.55□□□□□ -1.36
CTNNA1-243ENST00000540387 hDV103S1A0JD37 113 aa6.55□□□□□ -1.36
CTNNA1-243ENST00000540387 K7EQD1 137 aa6.55□□□□□ -1.36
CTNNA1-243ENST00000540387 NANOS2P60321 138 aaKnown RBP6.55□□□□□ -1.36
CTNNA1-243ENST00000540387 NTM-AS1Q6ZSK4 140 aa6.55□□□□□ -1.36
CTNNA1-243ENST00000540387 FBN1P35555 2871 aaKnown RBP6.55□□□□□ -1.36
CTNNA1-243ENST00000540387 C4orf3Q8WVX3 66 aa6.54□□□□□ -1.36
CTNNA1-243ENST00000540387 PSPHP1O15172 72 aa6.54□□□□□ -1.36
CTNNA1-243ENST00000540387 SLURP1P55000 103 aa6.54□□□□□ -1.36
CTNNA1-243ENST00000540387 KRTAP24-1Q3LI83 254 aa6.53□□□□□ -1.36
CTNNA1-243ENST00000540387 RBM12B-AS1Q9P1G2 102 aa6.53□□□□□ -1.36
CTNNA1-243ENST00000540387 HIGD2AQ9BW72 106 aa6.52□□□□□ -1.37
CTNNA1-243ENST00000540387 PRR3P79522 188 aaKnown RBP6.52□□□□□ -1.37
CTNNA1-243ENST00000540387 COL6A5A8TX70 2615 aa6.51□□□□□ -1.37
CTNNA1-243ENST00000540387 CCL24O00175 119 aa6.51□□□□□ -1.37
CTNNA1-243ENST00000540387 OCR1Q9BZK8 76 aa6.51□□□□□ -1.37
CTNNA1-243ENST00000540387 TRAV22A0A0B4J277 110 aa6.5□□□□□ -1.37
CTNNA1-243ENST00000540387 A8MU10 97 aa6.5□□□□□ -1.37
CTNNA1-243ENST00000540387 K7EMT4 169 aa6.5□□□□□ -1.37
CTNNA1-243ENST00000540387 CD164L2Q6UWJ8 174 aa6.5□□□□□ -1.37
CTNNA1-243ENST00000540387 C9orf66Q5T8R8 295 aa6.5□□□□□ -1.37
CTNNA1-243ENST00000540387 C11orf45Q8TAV5 145 aa6.5□□□□□ -1.37
CTNNA1-243ENST00000540387 NOTCH3Q9UM47 2321 aa6.5□□□□□ -1.37
CTNNA1-243ENST00000540387 STAB1Q9NY15 2570 aa6.49□□□□□ -1.37
CTNNA1-243ENST00000540387 C1orf64Q8NEQ6 169 aa6.49□□□□□ -1.37
CTNNA1-243ENST00000540387 KTN1-AS1Q86SY8 53 aa6.49□□□□□ -1.37
CTNNA1-243ENST00000540387 TRRAPQ9Y4A5 3859 aa6.49□□□□□ -1.37
CTNNA1-243ENST00000540387 VWFP04275 2813 aa6.49□□□□□ -1.37
CTNNA1-243ENST00000540387 IGKV3OR2-268A0A0C4DH90 116 aa6.48□□□□□ -1.37
CTNNA1-243ENST00000540387 PDE6GP18545 87 aa6.48□□□□□ -1.37
CTNNA1-243ENST00000540387 C6orf99Q4VX62 202 aa6.48□□□□□ -1.37
CTNNA1-243ENST00000540387 LINC00575Q6W349 94 aa6.48□□□□□ -1.37
CTNNA1-243ENST00000540387 MUC7Q8TAX7 377 aa6.48□□□□□ -1.37
CTNNA1-243ENST00000540387 H3BS24 57 aa6.47□□□□□ -1.37
CTNNA1-243ENST00000540387 Q8N9L7 120 aa6.47□□□□□ -1.37
CTNNA1-243ENST00000540387 SPATA3Q8NHX4 192 aa6.47□□□□□ -1.37
CTNNA1-243ENST00000540387 LINC00588Q9Y4M8 146 aa6.47□□□□□ -1.37
CTNNA1-243ENST00000540387 IGHV3OR16-9A0A0B4J2B5 98 aa6.46□□□□□ -1.37
CTNNA1-243ENST00000540387 SYCNQ0VAF6 134 aa6.46□□□□□ -1.37
CTNNA1-243ENST00000540387 UBE2L6O14933 153 aa6.46□□□□□ -1.38
CTNNA1-243ENST00000540387 A8MUN3 132 aa6.45□□□□□ -1.38
CTNNA1-243ENST00000540387 IGKV4-1P06312 121 aa6.45□□□□□ -1.38
CTNNA1-243ENST00000540387 A8MTW9 85 aa6.44□□□□□ -1.38
CTNNA1-243ENST00000540387 UBE2BP63146 152 aa6.44□□□□□ -1.38
CTNNA1-243ENST00000540387 DEFB114Q30KQ6 69 aa6.44□□□□□ -1.38
CTNNA1-243ENST00000540387 M0R378 163 aa6.43□□□□□ -1.38
CTNNA1-243ENST00000540387 J3QL48 77 aa6.43□□□□□ -1.38
CTNNA1-243ENST00000540387 Q6ZQY7 126 aa6.43□□□□□ -1.38
CTNNA1-243ENST00000540387 IGLV4-60A0A075B6I1 120 aa6.41□□□□□ -1.38
CTNNA1-243ENST00000540387 LYRM9A8MSI8 78 aa6.41□□□□□ -1.38
CTNNA1-243ENST00000540387 PSCAO43653 123 aa6.41□□□□□ -1.38
CTNNA1-243ENST00000540387 Q5VV11 94 aa6.41□□□□□ -1.38
CTNNA1-243ENST00000540387 APOC4P55056 127 aa6.41□□□□□ -1.38
CTNNA1-243ENST00000540387 MDFIQ99750 246 aa6.41□□□□□ -1.38
CTNNA1-243ENST00000540387 DEFB131AP59861 70 aa6.4□□□□□ -1.38
CTNNA1-243ENST00000540387 C16orf90A8MZG2 172 aa6.4□□□□□ -1.39
CTNNA1-243ENST00000540387 IGLV1-51P01701 117 aa6.4□□□□□ -1.39
CTNNA1-243ENST00000540387 LINC00269Q8N2A0 174 aa6.4□□□□□ -1.39
CTNNA1-243ENST00000540387 LINC00612Q8N6U2 182 aa6.4□□□□□ -1.39
CTNNA1-243ENST00000540387 Q8NDZ9 215 aa6.4□□□□□ -1.39
CTNNA1-243ENST00000540387 FAM30AQ9NZY2 134 aa6.4□□□□□ -1.39
CTNNA1-243ENST00000540387 TRGV1A0A0A0MS02 117 aa6.39□□□□□ -1.39
CTNNA1-243ENST00000540387 CELA1Q9UNI1 258 aa6.39□□□□□ -1.39
CTNNA1-243ENST00000540387 LCE6AA0A183 80 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms