RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PDZD2O15018 2839 aa-0.17□□□□□ -2.44
NUP54-215ENST00000514313 FAT1Q14517 4588 aa-0.17□□□□□ -2.44
NUP54-215ENST00000514313 MON2Q7Z3U7 1717 aa-0.18□□□□□ -2.44
NUP54-215ENST00000514313 SRRM2Q9UQ35 2752 aaKnown RBP-0.18□□□□□ -2.44
NUP54-215ENST00000514313 KRTAP19-7Q3SYF9 63 aa-0.18□□□□□ -2.44
NUP54-215ENST00000514313 NEBP20929 6669 aa-0.18□□□□□ -2.44
NUP54-215ENST00000514313 CLTCQ00610 1675 aaKnown RBP-0.18□□□□□ -2.44
NUP54-215ENST00000514313 ZANQ9Y493 2812 aa-0.19□□□□□ -2.44
NUP54-215ENST00000514313 FLNAP21333 2647 aaKnown RBP-0.19□□□□□ -2.44
NUP54-215ENST00000514313 C20orf78Q9BR46 151 aa-0.19□□□□□ -2.44
NUP54-215ENST00000514313 HERC2O95714 4834 aa-0.19□□□□□ -2.44
NUP54-215ENST00000514313 CREBBPQ92793 2442 aa-0.19□□□□□ -2.44
NUP54-215ENST00000514313 FAT2Q9NYQ8 4349 aa-0.2□□□□□ -2.44
NUP54-215ENST00000514313 NKTRP30414 1462 aaKnown RBP-0.2□□□□□ -2.44
NUP54-215ENST00000514313 TNXBP22105 4242 aa-0.2□□□□□ -2.44
NUP54-215ENST00000514313 I3L3M4 83 aa-0.2□□□□□ -2.44
NUP54-215ENST00000514313 GYPAP02724 150 aa-0.2□□□□□ -2.44
NUP54-215ENST00000514313 KIAA1109Q2LD37 5005 aa-0.2□□□□□ -2.44
NUP54-215ENST00000514313 EPRSP07814 1512 aaKnown RBP-0.21□□□□□ -2.44
NUP54-215ENST00000514313 RYR3Q15413 4870 aa-0.21□□□□□ -2.44
NUP54-215ENST00000514313 SETXQ7Z333 2677 aaKnown RBP-0.21□□□□□ -2.44
NUP54-215ENST00000514313 LOC730098B7Z3J9 87 aa-0.21□□□□□ -2.44
NUP54-215ENST00000514313 EPPK1P58107 5090 aaKnown RBP-0.22□□□□□ -2.44
NUP54-215ENST00000514313 LPAP08519 4548 aa-0.22□□□□□ -2.44
NUP54-215ENST00000514313 KMT2AQ03164 3969 aa-0.22□□□□□ -2.44
NUP54-215ENST00000514313 KRTAP19-8Q3LI54 63 aa-0.22□□□□□ -2.44
NUP54-215ENST00000514313 C5P01031 1676 aa-0.22□□□□□ -2.44
NUP54-215ENST00000514313 USH2AO75445 5202 aa-0.22□□□□□ -2.44
NUP54-215ENST00000514313 HIVEP1P15822 2718 aa-0.22□□□□□ -2.45
NUP54-215ENST00000514313 RYR1P21817 5038 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 SAMD9Q5K651 1589 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 IGLC2P0DOY2 106 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 IGLC3P0DOY3 106 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 KRTAP20-2Q3LI61 65 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 NF1P21359 2839 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 UBR4Q5T4S7 5183 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 STARD9Q9P2P6 4700 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 NBEAL1Q6ZS30 2694 aa-0.23□□□□□ -2.45
NUP54-215ENST00000514313 HYDINQ4G0P3 5121 aa-0.24□□□□□ -2.45
NUP54-215ENST00000514313 FANCAO15360 1455 aa-0.24□□□□□ -2.45
NUP54-215ENST00000514313 BIRC6Q9NR09 4857 aa-0.24□□□□□ -2.45
NUP54-215ENST00000514313 RYR2Q92736 4967 aa-0.25□□□□□ -2.45
NUP54-215ENST00000514313 HSPG2P98160 4391 aa-0.25□□□□□ -2.45
NUP54-215ENST00000514313 BSNQ9UPA5 3926 aa-0.25□□□□□ -2.45
NUP54-215ENST00000514313 ATP10BO94823 1461 aa-0.25□□□□□ -2.45
NUP54-215ENST00000514313 LRRC37AA6NMS7 1700 aa-0.25□□□□□ -2.45
NUP54-215ENST00000514313 DOPEY1Q5JWR5 2465 aa-0.25□□□□□ -2.45
NUP54-215ENST00000514313 MAP1AP78559 2803 aaPredicted RBP-0.25□□□□□ -2.45
NUP54-215ENST00000514313 DCHS2Q6V1P9 2916 aa-0.25□□□□□ -2.45
NUP54-215ENST00000514313 CUX1P39880 1505 aa-0.26□□□□□ -2.45
NUP54-215ENST00000514313 TENM2Q9NT68 2774 aa-0.26□□□□□ -2.45
NUP54-215ENST00000514313 MYH4Q9Y623 1939 aa-0.26□□□□□ -2.45
NUP54-215ENST00000514313 COL6A3P12111 3177 aa-0.27□□□□□ -2.45
NUP54-215ENST00000514313 RNF213Q63HN8 5207 aa-0.27□□□□□ -2.45
NUP54-215ENST00000514313 MT4P47944 62 aa-0.27□□□□□ -2.45
NUP54-215ENST00000514313 FLNBO75369 2602 aaKnown RBP-0.27□□□□□ -2.45
NUP54-215ENST00000514313 STAB2Q8WWQ8 2551 aa-0.28□□□□□ -2.45
NUP54-215ENST00000514313 H1FX-AS1Q4G0G2 97 aa-0.28□□□□□ -2.45
NUP54-215ENST00000514313 Q9H521 79 aa-0.28□□□□□ -2.45
NUP54-215ENST00000514313 LAMA5O15230 3695 aa-0.28□□□□□ -2.45
NUP54-215ENST00000514313 LRP1BQ9NZR2 4599 aa-0.28□□□□□ -2.45
NUP54-215ENST00000514313 HECTD4Q9Y4D8 3996 aa-0.29□□□□□ -2.46
NUP54-215ENST00000514313 TROQ12816 1431 aaPredicted RBP-0.29□□□□□ -2.46
NUP54-215ENST00000514313 UBE2D4Q9Y2X8 147 aa-0.29□□□□□ -2.46
NUP54-215ENST00000514313 SETD2Q9BYW2 2564 aaPredicted RBP-0.29□□□□□ -2.46
NUP54-215ENST00000514313 IQSEC2Q5JU85 1478 aa-0.29□□□□□ -2.46
NUP54-215ENST00000514313 MXRA5Q9NR99 2828 aa-0.3□□□□□ -2.46
NUP54-215ENST00000514313 CRYBG1Q9Y4K1 1723 aa-0.3□□□□□ -2.46
NUP54-215ENST00000514313 NBPF19A0A087WUL8 3843 aa-0.31□□□□□ -2.46
NUP54-215ENST00000514313 SMIM11AP58511 58 aa-0.31□□□□□ -2.46
NUP54-215ENST00000514313 MRPL34Q9BQ48 92 aaKnown RBP-0.31□□□□□ -2.46
NUP54-215ENST00000514313 KIAA1551Q9HCM1 1747 aa-0.31□□□□□ -2.46
NUP54-215ENST00000514313 ACANP16112 2415 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 HECTD1Q9ULT8 2610 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 USP9YO00507 2555 aaPredicted RBP-0.32□□□□□ -2.46
NUP54-215ENST00000514313 TGP01266 2768 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 DNHD1Q96M86 4753 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 APC2O95996 2303 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 SPTY2D1-AS1A0A0U1RR47 76 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 HMGN2P05204 90 aaKnown RBP-0.32□□□□□ -2.46
NUP54-215ENST00000514313 SPRR2BP35325 72 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 DEFB112Q30KQ8 113 aa-0.32□□□□□ -2.46
NUP54-215ENST00000514313 LAMA2P24043 3122 aaKnown RBP-0.32□□□□□ -2.46
NUP54-215ENST00000514313 ATRQ13535 2644 aa-0.33□□□□□ -2.46
NUP54-215ENST00000514313 PEA15Q15121 130 aa-0.33□□□□□ -2.46
NUP54-215ENST00000514313 SPTA1P02549 2419 aa-0.33□□□□□ -2.46
NUP54-215ENST00000514313 ABCA13Q86UQ4 5058 aa-0.34□□□□□ -2.46
NUP54-215ENST00000514313 ITPR3Q14573 2671 aa-0.34□□□□□ -2.46
NUP54-215ENST00000514313 ALMS1Q8TCU4 4167 aa-0.34□□□□□ -2.46
NUP54-215ENST00000514313 FASNP49327 2511 aaKnown RBP-0.34□□□□□ -2.46
NUP54-215ENST00000514313 COL12A1Q99715 3063 aa-0.34□□□□□ -2.46
NUP54-215ENST00000514313 FLGP20930 4061 aaPredicted RBP-0.35□□□□□ -2.47
NUP54-215ENST00000514313 EPG5Q9HCE0 2579 aa-0.35□□□□□ -2.47
NUP54-215ENST00000514313 EP300Q09472 2414 aaPredicted RBP-0.35□□□□□ -2.47
NUP54-215ENST00000514313 TEP1Q99973 2627 aaKnown RBP-0.35□□□□□ -2.47
NUP54-215ENST00000514313 MAP1BP46821 2468 aaKnown RBP-0.36□□□□□ -2.47
NUP54-215ENST00000514313 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.36□□□□□ -2.47
NUP54-215ENST00000514313 HTTP42858 3142 aa-0.36□□□□□ -2.47
NUP54-215ENST00000514313 SPRR2AP35326 72 aa-0.36□□□□□ -2.47
NUP54-215ENST00000514313 PYY3Q5JQD4 70 aa-0.36□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms