RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 MTORP42345 2549 aa1.72□□□□□ -2.13
VPS13A-212ENST00000493341 DOCK11Q5JSL3 2073 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 ZFHX3Q15911 3703 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 TCRBV3S1A0A5B6 114 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 SMIM11AP58511 58 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 FXYD6P3P58550 94 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 TSKUQ8WUA8 353 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 MXRA5Q9NR99 2828 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 FLG2Q5D862 2391 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-212ENST00000493341 MCRIP1C9JLW8 97 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 FXYD3Q14802 87 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 Q56UQ5 140 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 C9orf116Q5BN46 136 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-212ENST00000493341 SPTSSBQ8NFR3 76 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 BPESC1Q9GZL8 116 aa1.71□□□□□ -2.14
VPS13A-212ENST00000493341 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
VPS13A-212ENST00000493341 TLN2Q9Y4G6 2542 aa1.7□□□□□ -2.14
VPS13A-212ENST00000493341 IQCF6A8MYZ5 107 aa1.7□□□□□ -2.14
VPS13A-212ENST00000493341 RBP2P50120 134 aa1.7□□□□□ -2.14
VPS13A-212ENST00000493341 XAF1Q6GPH4 301 aa1.7□□□□□ -2.14
VPS13A-212ENST00000493341 DYNLRB1Q9NP97 96 aa1.7□□□□□ -2.14
VPS13A-212ENST00000493341 RPRMQ9NS64 109 aa1.7□□□□□ -2.14
VPS13A-212ENST00000493341 TRAV12-3A0A0B4J271 114 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 NBDYA0A0U1RRE5 68 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 ANGP03950 147 aaKnown RBP1.69□□□□□ -2.14
VPS13A-212ENST00000493341 CYP2G1PQ6ZSU1 146 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 NDUFA11Q86Y39 141 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 CSPG4Q6UVK1 2322 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 SONP18583 2426 aaKnown RBP1.69□□□□□ -2.14
VPS13A-212ENST00000493341 CBLN1P23435 193 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 GNG4P50150 75 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 TPPP2P59282 170 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 GNGT1P63211 74 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 LINC01590Q5TEZ4 76 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 Q6AWC8 147 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 DEFB107AQ8IZN7 70 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 IER3IP1Q9Y5U9 82 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 CMYA5Q8N3K9 4069 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 DNHD1Q96M86 4753 aa1.69□□□□□ -2.14
VPS13A-212ENST00000493341 FBN3Q75N90 2809 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 LYNX1G3V0Z9 82 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 S100A8P05109 93 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 CCL8P80075 99 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 CATR1Q13166 79 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 DEFB108BQ8NET1 73 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 LINC00208Q96KT6 92 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 CMC2Q9NRP2 79 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 KAAG1Q9UBP8 84 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 CUBNO60494 3623 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 COL6A5A8TX70 2615 aa1.68□□□□□ -2.14
VPS13A-212ENST00000493341 C20orf202A1L168 122 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 M0R135 149 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 NPC2P61916 151 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 PPP3R1P63098 170 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 RBM3P98179 157 aaKnown RBP1.67□□□□□ -2.14
VPS13A-212ENST00000493341 MRPL54Q6P161 138 aaKnown RBP1.67□□□□□ -2.14
VPS13A-212ENST00000493341 TCEAL7Q9BRU2 100 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 ATRQ13535 2644 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 WNK2Q9Y3S1 2297 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 UBA52P62987 128 aaKnown RBP1.67□□□□□ -2.14
VPS13A-212ENST00000493341 C12orf73Q69YU5 71 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 JMJD1CQ15652 2540 aa1.67□□□□□ -2.14
VPS13A-212ENST00000493341 TRBV30A0A0K0K1B3 111 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 CAV3P56539 151 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 C5orf56Q8N8D9 126 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 V9GYS6 101 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 DNAH3Q8TD57 4116 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 M0R1W7 72 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 SNRPGP62308 76 aaKnown RBP1.66□□□□□ -2.14
VPS13A-212ENST00000493341 LCE1CQ5T751 118 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 LCE1BQ5T7P3 118 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 LINC00575Q6W349 94 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 C9orf62Q8N4C0 152 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 TENM1Q9UKZ4 2725 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 STAB1Q9NY15 2570 aa1.66□□□□□ -2.14
VPS13A-212ENST00000493341 SVEP1Q4LDE5 3571 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 PIGBOS1A0A0B4J2F0 54 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 TEX49A0A1B0GTD5 131 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 RPS27P42677 84 aaKnown RBP1.65□□□□□ -2.15
VPS13A-212ENST00000493341 INSL4Q14641 139 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 C9orf153Q5TBE3 101 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 GAFA1Q96PS6 74 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 SNHG12Q9BXW3 62 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 AP4S1Q9Y587 144 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 R4GMQ9 66 aa1.65□□□□□ -2.15
VPS13A-212ENST00000493341 GNGT2O14610 69 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 IFNA17P01571 189 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 PKIAP61925 76 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 DEFB112Q30KQ8 113 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 TRRAPQ9Y4A5 3859 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 CLPSL1A2RUU4 121 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 OOSP1A8MZH6 123 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 GYPAP02724 150 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 ZNF56Q15929 161 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 VMO1Q7Z5L0 202 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 C20orf197Q8N268 126 aa1.64□□□□□ -2.15
VPS13A-212ENST00000493341 PKD1L1Q8TDX9 2849 aa1.63□□□□□ -2.15
VPS13A-212ENST00000493341 SMIM31A0A1B0GVY4 71 aa1.63□□□□□ -2.15
VPS13A-212ENST00000493341 A0A1W2PPM0 123 aa1.63□□□□□ -2.15
VPS13A-212ENST00000493341 MINOS1Q5TGZ0 78 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms