RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 H7BZZ5 65 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 IGLV2-11P01706 119 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 TCRAP04437 139 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 KLKP1Q107X0 134 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 DEFB135Q30KP9 77 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 AMELXQ99217 191 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 TIMM21Q9BVV7 248 aa3.16□□□□□ -1.9
SF3B1-202ENST00000409915 PLECQ15149 4684 aaKnown RBP3.16□□□□□ -1.9
SF3B1-202ENST00000409915 KRTAP4-16G5E9R7 235 aaPredicted RBP3.15□□□□□ -1.91
SF3B1-202ENST00000409915 SOCS3O14543 225 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 NDUFC1O43677 76 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 IGKV3-20P01619 116 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 INAFM2P0DMQ5 153 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 KRTAP15-1Q3LI76 137 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 ZNF876PQ49A33 203 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 C10orf113Q5VZT2 155 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 LINC00305Q7Z4B0 112 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 C7orf33Q8WU49 177 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 TM2D3Q9BRN9 247 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 TMEM14CQ9P0S9 112 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 UBE2D4Q9Y2X8 147 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 RYR2Q92736 4967 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 RYR3Q15413 4870 aa3.15□□□□□ -1.91
SF3B1-202ENST00000409915 IGLV7-46A0A075B6I9 117 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 IGHV1-58A0A0C4DH39 117 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 TRBV10-3A0A0K0K1G6 114 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 SDHAF1A6NFY7 115 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 CCKP06307 115 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 COX6CP09669 75 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 CKS2P33552 79 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 FXYD7P58549 80 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 SNRPD3P62318 126 aaKnown RBP3.14□□□□□ -1.91
SF3B1-202ENST00000409915 ATP5EP2Q5VTU8 51 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 LYPD5Q6UWN5 251 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 BRK1Q8WUW1 75 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 SLC50A1Q9BRV3 221 aa3.14□□□□□ -1.91
SF3B1-202ENST00000409915 TIMM8BQ9Y5J9 83 aaPredicted RBP3.14□□□□□ -1.91
SF3B1-202ENST00000409915 CSMD3Q7Z407 3707 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 C11orf86A6NJI1 115 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 M0R381 172 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 DEFB4AO15263 64 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 GIG44P09565 113 aaPredicted RBP3.13□□□□□ -1.91
SF3B1-202ENST00000409915 XCL1P47992 114 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 RHOHQ15669 191 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 C9orf47Q6ZRZ4 202 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 LYPD1Q8N2G4 141 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 FAM104AQ969W3 186 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 TOMM6Q96B49 74 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 ICOSQ9Y6W8 199 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 SACSQ9NZJ4 4579 aa3.13□□□□□ -1.91
SF3B1-202ENST00000409915 DYNC2H1Q8NCM8 4307 aaKnown RBP3.13□□□□□ -1.91
SF3B1-202ENST00000409915 TRAV7A0A075B6U4 112 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 A0A0J9YWU9 116 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 IGIPA6NJ69 53 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 M0R3E3 92 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 CRIP1P50238 77 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 CMC4P56277 68 aaPredicted RBP3.12□□□□□ -1.91
SF3B1-202ENST00000409915 LINC00313P59037 77 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 SFTA2Q6UW10 78 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 LYZL1Q6UWQ5 148 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 OBSCN-AS1Q96MR7 158 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 C22orf24Q9Y442 160 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 LYSTQ99698 3801 aa3.12□□□□□ -1.91
SF3B1-202ENST00000409915 HYDINQ4G0P3 5121 aa3.11□□□□□ -1.91
SF3B1-202ENST00000409915 ALMS1Q8TCU4 4167 aa3.11□□□□□ -1.91
SF3B1-202ENST00000409915 IGKV2-40A0A087WW87 121 aaPredicted RBP3.11□□□□□ -1.91
SF3B1-202ENST00000409915 TRAV13-2A0A0B4J235 113 aa3.11□□□□□ -1.91
SF3B1-202ENST00000409915 IGKV2D-40P01614 121 aaPredicted RBP3.11□□□□□ -1.91
SF3B1-202ENST00000409915 SPINK13Q1W4C9 94 aa3.11□□□□□ -1.91
SF3B1-202ENST00000409915 DNAH1Q9P2D7 4330 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 IGLV4-69A0A075B6H9 119 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 A0A1B0GUV1 79 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 LEPROTO15243 131 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 ERC2-IT1O76042 136 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 PRM2P04554 102 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 ZNF80P51504 273 aaPredicted RBP3.1□□□□□ -1.91
SF3B1-202ENST00000409915 Q8NAQ8 132 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 Q8TAT8 98 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 MUC7Q8TAX7 377 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 SND1-IT1Q9HBX3 110 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 CELA1Q9UNI1 258 aa3.1□□□□□ -1.91
SF3B1-202ENST00000409915 TRBV27A0A0K0K1C4 114 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 A8MTW9 85 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 KRTAP16-1A8MUX0 517 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 I3L3M4 83 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 TIMM17BO60830 172 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 INSP01308 110 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 NANOS2P60321 138 aaKnown RBP3.09□□□□□ -1.91
SF3B1-202ENST00000409915 PDE6HQ13956 83 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 Q1T7F1 81 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 S100A7L2Q5SY68 101 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 CAMK2N1Q7Z7J9 78 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 KTN1-AS1Q86SY8 53 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 MUSTN1Q8IVN3 82 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 CAMK2N2Q96S95 79 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 LITAFQ99732 161 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 SMIM2Q9BVW6 85 aa3.09□□□□□ -1.91
SF3B1-202ENST00000409915 C11orf68Q9H3H3 251 aaKnown RBP3.09□□□□□ -1.91
SF3B1-202ENST00000409915 TENM2Q9NT68 2774 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms