RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 TLX1NBP0CAT3 122 aa3.73□□□□□ -1.81
PTPRB-202ENST00000334414 DMAC1Q96GE9 116 aa3.73□□□□□ -1.81
PTPRB-202ENST00000334414 LY6G6CO95867 125 aa3.73□□□□□ -1.81
PTPRB-202ENST00000334414 RBM12B-AS1Q9P1G2 102 aa3.73□□□□□ -1.81
PTPRB-202ENST00000334414 DSCAMO60469 2012 aa3.72□□□□□ -1.81
PTPRB-202ENST00000334414 LINC01554Q52M75 96 aa3.72□□□□□ -1.81
PTPRB-202ENST00000334414 C15orf56Q8N910 161 aa3.72□□□□□ -1.81
PTPRB-202ENST00000334414 LINC00483Q53H64 154 aa3.72□□□□□ -1.81
PTPRB-202ENST00000334414 SPTA1P02549 2419 aa3.71□□□□□ -1.82
PTPRB-202ENST00000334414 SPACA4Q8TDM5 124 aa3.71□□□□□ -1.82
PTPRB-202ENST00000334414 IGFL1Q6UW32 110 aa3.71□□□□□ -1.82
PTPRB-202ENST00000334414 DNAH10OSP0CZ25 163 aa3.71□□□□□ -1.82
PTPRB-202ENST00000334414 PKDREJQ9NTG1 2253 aa3.71□□□□□ -1.82
PTPRB-202ENST00000334414 M0R2N4 97 aa3.71□□□□□ -1.82
PTPRB-202ENST00000334414 A0A0A0MQY5 61 aa3.7□□□□□ -1.82
PTPRB-202ENST00000334414 CEP290O15078 2479 aa3.7□□□□□ -1.82
PTPRB-202ENST00000334414 CADP27708 2225 aa3.7□□□□□ -1.82
PTPRB-202ENST00000334414 ATRXP46100 2492 aa3.7□□□□□ -1.82
PTPRB-202ENST00000334414 Q96NJ1 140 aa3.7□□□□□ -1.82
PTPRB-202ENST00000334414 SPTBN2O15020 2390 aa3.7□□□□□ -1.82
PTPRB-202ENST00000334414 IGLV5-48A0A075B6I7 105 aa3.69□□□□□ -1.82
PTPRB-202ENST00000334414 NAV3Q8IVL0 2385 aa3.69□□□□□ -1.82
PTPRB-202ENST00000334414 OCR1Q9BZK8 76 aa3.69□□□□□ -1.82
PTPRB-202ENST00000334414 CDSNQ15517 529 aa3.69□□□□□ -1.82
PTPRB-202ENST00000334414 IGLV7-46A0A075B6I9 117 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 PLA2G1BP04054 148 aaKnown RBP3.68□□□□□ -1.82
PTPRB-202ENST00000334414 TNCP24821 2201 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 APLNQ9ULZ1 77 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 ABCA4P78363 2273 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 PRR34Q9NV39 138 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 CHTF8P0CG12 524 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 IGLV8-61A0A075B6I0 122 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 IGLV5-37A0A075B6J1 123 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 TYMSOSQ8TAI1 123 aa3.68□□□□□ -1.82
PTPRB-202ENST00000334414 RTL8CO15255 209 aa3.67□□□□□ -1.82
PTPRB-202ENST00000334414 Q5XG85 94 aa3.67□□□□□ -1.82
PTPRB-202ENST00000334414 H3BS24 57 aa3.66□□□□□ -1.82
PTPRB-202ENST00000334414 LINC01558Q9Y6Z2 57 aa3.66□□□□□ -1.82
PTPRB-202ENST00000334414 Q8NAQ8 132 aa3.66□□□□□ -1.82
PTPRB-202ENST00000334414 NBDYA0A0U1RRE5 68 aa3.65□□□□□ -1.82
PTPRB-202ENST00000334414 TRIOBPQ9H2D6 2365 aa3.65□□□□□ -1.82
PTPRB-202ENST00000334414 SPRR4Q96PI1 79 aa3.65□□□□□ -1.82
PTPRB-202ENST00000334414 ZDBF2Q9HCK1 2354 aa3.65□□□□□ -1.82
PTPRB-202ENST00000334414 SORL1Q92673 2214 aa3.65□□□□□ -1.83
PTPRB-202ENST00000334414 NOTCH3Q9UM47 2321 aa3.65□□□□□ -1.83
PTPRB-202ENST00000334414 Q8N377 158 aa3.65□□□□□ -1.83
PTPRB-202ENST00000334414 PHF5AQ7RTV0 110 aaKnown RBP3.64□□□□□ -1.83
PTPRB-202ENST00000334414 LINC00612Q8N6U2 182 aa3.64□□□□□ -1.83
PTPRB-202ENST00000334414 ANKHD1Q8IWZ3 2542 aaKnown RBP3.63□□□□□ -1.83
PTPRB-202ENST00000334414 ZNF861PO60384 105 aa3.63□□□□□ -1.83
PTPRB-202ENST00000334414 CACNA1GO43497 2377 aa3.63□□□□□ -1.83
PTPRB-202ENST00000334414 PTPRZ1P23471 2315 aaPredicted RBP3.62□□□□□ -1.83
PTPRB-202ENST00000334414 SPTAN1Q13813 2472 aaKnown RBP3.62□□□□□ -1.83
PTPRB-202ENST00000334414 LINC00304Q8N9R0 145 aa3.62□□□□□ -1.83
PTPRB-202ENST00000334414 CNBPP62633 177 aaKnown RBP3.62□□□□□ -1.83
PTPRB-202ENST00000334414 C9orf129Q5T035 196 aaKnown RBP3.62□□□□□ -1.83
PTPRB-202ENST00000334414 LINC00588Q9Y4M8 146 aa3.62□□□□□ -1.83
PTPRB-202ENST00000334414 PLCE1Q9P212 2302 aa3.61□□□□□ -1.83
PTPRB-202ENST00000334414 CSNK1G2-AS1Q8NCQ2 148 aa3.61□□□□□ -1.83
PTPRB-202ENST00000334414 CACNA1BQ00975 2339 aa3.61□□□□□ -1.83
PTPRB-202ENST00000334414 DSCR10P59022 87 aa3.61□□□□□ -1.83
PTPRB-202ENST00000334414 TNP2Q05952 138 aa3.61□□□□□ -1.83
PTPRB-202ENST00000334414 NCOR1O75376 2440 aa3.61□□□□□ -1.83
PTPRB-202ENST00000334414 A0A087X002 238 aa3.61□□□□□ -1.83
PTPRB-202ENST00000334414 COL6A6A6NMZ7 2263 aa3.6□□□□□ -1.83
PTPRB-202ENST00000334414 ACACAQ13085 2346 aa3.6□□□□□ -1.83
PTPRB-202ENST00000334414 Q8N9P0 234 aaPredicted RBP3.59□□□□□ -1.83
PTPRB-202ENST00000334414 PCNX1Q96RV3 2341 aa3.59□□□□□ -1.83
PTPRB-202ENST00000334414 A0A1B0GU33 70 aa3.59□□□□□ -1.83
PTPRB-202ENST00000334414 Q5VV11 94 aa3.59□□□□□ -1.83
PTPRB-202ENST00000334414 FAM168BA1KXE4 195 aa3.59□□□□□ -1.83
PTPRB-202ENST00000334414 ROS1P08922 2347 aa3.59□□□□□ -1.84
PTPRB-202ENST00000334414 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.58□□□□□ -1.84
PTPRB-202ENST00000334414 CAMK2N1Q7Z7J9 78 aa3.58□□□□□ -1.84
PTPRB-202ENST00000334414 C9orf163Q8N9P6 203 aa3.58□□□□□ -1.84
PTPRB-202ENST00000334414 EP300Q09472 2414 aaPredicted RBP3.58□□□□□ -1.84
PTPRB-202ENST00000334414 A0A1W2PNM2 257 aa3.57□□□□□ -1.84
PTPRB-202ENST00000334414 WNK1Q9H4A3 2382 aa3.57□□□□□ -1.84
PTPRB-202ENST00000334414 FP248Q71RG6 208 aaPredicted RBP3.57□□□□□ -1.84
PTPRB-202ENST00000334414 CNOT1A5YKK6 2376 aaKnown RBP3.56□□□□□ -1.84
PTPRB-202ENST00000334414 EIF4EBP3O60516 100 aaPredicted RBP3.56□□□□□ -1.84
PTPRB-202ENST00000334414 HRES1P13985 223 aa3.56□□□□□ -1.84
PTPRB-202ENST00000334414 IGLV7-43P04211 117 aa3.55□□□□□ -1.84
PTPRB-202ENST00000334414 HIVEP2P31629 2446 aa3.55□□□□□ -1.84
PTPRB-202ENST00000334414 A0A1W2PPR1 153 aa3.54□□□□□ -1.84
PTPRB-202ENST00000334414 FAM229BQ4G0N7 80 aa3.54□□□□□ -1.84
PTPRB-202ENST00000334414 MED13LQ71F56 2210 aa3.54□□□□□ -1.84
PTPRB-202ENST00000334414 ROMO1P60602 79 aa3.53□□□□□ -1.84
PTPRB-202ENST00000334414 CREBBPQ92793 2442 aa3.53□□□□□ -1.84
PTPRB-202ENST00000334414 TECTAO75443 2155 aa3.53□□□□□ -1.85
PTPRB-202ENST00000334414 CACNA1HO95180 2353 aa3.52□□□□□ -1.85
PTPRB-202ENST00000334414 COX6B2Q6YFQ2 88 aa3.52□□□□□ -1.85
PTPRB-202ENST00000334414 GIG44P09565 113 aaPredicted RBP3.51□□□□□ -1.85
PTPRB-202ENST00000334414 A0A0D9SG42 100 aa3.51□□□□□ -1.85
PTPRB-202ENST00000334414 PTPRQQ9UMZ3 2332 aa3.51□□□□□ -1.85
PTPRB-202ENST00000334414 MMP24-AS1A0A0U1RRL7 71 aa3.51□□□□□ -1.85
PTPRB-202ENST00000334414 CSAG1Q6PB30 78 aa3.51□□□□□ -1.85
PTPRB-202ENST00000334414 GVINP1Q7Z2Y8 2422 aa3.51□□□□□ -1.85
PTPRB-202ENST00000334414 C19orf73Q9NVV2 129 aa3.49□□□□□ -1.85
PTPRB-202ENST00000334414 Q8N1X5 172 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 170.9 ms