RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 KIF14Q15058 1648 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 MYO3AQ8NEV4 1616 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 A0A0G2JND7 137 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 CTXND1A0A1B0GTU2 59 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 A0A1W2PPM0 123 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 KANTRA0A1W2PQU2 76 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 SYS1-DBNDD2H3BUS1 97 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 BAGE3Q86Y29 109 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 OBSCN-AS1Q96MR7 158 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 AMELXQ99217 191 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 NDUFA4L2Q9NRX3 87 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 TMEM14BQ9NUH8 114 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 ABCC2Q92887 1545 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 LRRC7Q96NW7 1537 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 CDH23Q9H251 3354 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 E9PCH4 1651 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 MYOM1P52179 1685 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 BAZ2BQ9UIF8 2168 aaKnown RBP0.87□□□□□ -2.27
CD44-239ENST00000639002 LAMA4Q16363 1823 aa0.87□□□□□ -2.27
CD44-239ENST00000639002 SNRNP200O75643 2136 aaKnown RBP0.86□□□□□ -2.27
CD44-239ENST00000639002 FREM1Q5H8C1 2179 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 CLASP1Q7Z460 1538 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 DCAF1Q9Y4B6 1507 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.86□□□□□ -2.27
CD44-239ENST00000639002 TRAV22A0A0B4J277 110 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 TRBV30A0A0K0K1B3 111 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 NBDYA0A0U1RRE5 68 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 TMEM14DPA8MWL7 114 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 F2Z2F3 143 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 H3BQF6 201 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 HMGN4O00479 90 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 BCE1O60756 84 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 ACYP1P07311 99 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 KRTAP2-3P0C7H8 128 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 SAA2P0DJI9 122 aaPredicted RBP0.86□□□□□ -2.27
CD44-239ENST00000639002 UBE2D3P61077 147 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 UBE2D2P62837 147 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 COX17Q14061 63 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 LINC00575Q6W349 94 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 SMIM4Q8WVI0 70 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 LINC00208Q96KT6 92 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 CCL19Q99731 98 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 KRTAP2-4Q9BYR9 128 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 SPTBN2O15020 2390 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 CEP162Q5TB80 1403 aa0.86□□□□□ -2.27
CD44-239ENST00000639002 EDC4Q6P2E9 1401 aaKnown RBP0.86□□□□□ -2.27
CD44-239ENST00000639002 RTTNQ86VV8 2226 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 MAP3K1Q13233 1512 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 EHBP1L1Q8N3D4 1523 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 KIF21AQ7Z4S6 1674 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 SPTBP11277 2137 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 DSPP15924 2871 aaKnown RBP0.85□□□□□ -2.27
CD44-239ENST00000639002 TRBV25-1A0A075B6N4 114 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 A0A1B0GWA3 101 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 ZNF815PA8K554 130 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 F8VRH5 84 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 UQCR11O14957 56 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 ACYP2P14621 99 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 EFNA4P52798 201 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 CCL18P55774 89 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 FXYD6P3P58550 94 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 SNRPFP62306 86 aaKnown RBP0.85□□□□□ -2.27
CD44-239ENST00000639002 SPINK13Q1W4C9 94 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 PSMG4Q5JS54 123 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 NUP188Q5SRE5 1749 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 SFTA2Q6UW10 78 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 VMO1Q7Z5L0 202 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 BAGE2Q86Y30 109 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 C20orf78Q9BR46 151 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 ST20Q9HBF5 79 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 CDC42SE2Q9NRR3 84 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 SPCS1Q9Y6A9 102 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 ARL2-SNX15V9GYD0 113 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 UNC13CQ8NB66 2214 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 MRC1P22897 1456 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 DNAH14Q0VDD8 3507 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 ESPL1Q14674 2120 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 PRUNE2Q8WUY3 3088 aa0.85□□□□□ -2.27
CD44-239ENST00000639002 COL4A1P02462 1669 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 DOCK10Q96BY6 2186 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 IFT172Q9UG01 1749 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 RGPD8O14715 1765 aaPredicted RBP0.84□□□□□ -2.27
CD44-239ENST00000639002 RGPD5Q99666 1765 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 SCN11AQ9UI33 1791 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 IGLC7A0M8Q6 106 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 CLPSL1A2RUU4 121 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 M0R135 149 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 MGPP08493 103 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 NMBP08949 121 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 HMGN3Q15651 99 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 ETDBQ3ZM63 59 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 Q5VV11 94 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 C10orf99Q6UWK7 81 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 WFDC6Q9BQY6 131 aa0.84□□□□□ -2.27
CD44-239ENST00000639002 SMG1Q96Q15 3661 aaKnown RBP0.84□□□□□ -2.28
CD44-239ENST00000639002 APCP25054 2843 aa0.84□□□□□ -2.28
CD44-239ENST00000639002 ERVK-7P63135 1459 aa0.84□□□□□ -2.28
CD44-239ENST00000639002 MAP2P11137 1827 aaKnown RBP0.84□□□□□ -2.28
CD44-239ENST00000639002 ARFGEF3Q5TH69 2177 aa0.84□□□□□ -2.28
CD44-239ENST00000639002 MED12Q93074 2177 aa0.84□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms