RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TAC4Q86UU9 113 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 CTAGE3PQ8IX95 158 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 TTC9CQ8N5M4 171 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 TMEM263Q8WUH6 116 aaKnown RBP-0.47□□□□□ -2.48
VPS35-212ENST00000640313 PSMG3Q9BT73 122 aaPredicted RBP-0.47□□□□□ -2.48
VPS35-212ENST00000640313 SMIM3Q9BZL3 60 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 FXYD6Q9H0Q3 95 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 SPANXA1Q9NS26 97 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 CRIPTQ9P021 101 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 APLNQ9ULZ1 77 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 V9GYH0 126 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 V9GYQ6 96 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 PARP14Q460N5 1801 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 POLA1P09884 1462 aaPredicted RBP-0.48□□□□□ -2.49
VPS35-212ENST00000640313 A0A0C4DFX4 3053 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 PBRM1Q86U86 1689 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 LRRK2Q5S007 2527 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 ABCA13Q86UQ4 5058 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 TRBV7-3A0A075B6L6 115 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 GNG14A0A1W2PPG7 69 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 CPSF4LA6NMK7 179 aaKnown RBP-0.48□□□□□ -2.49
VPS35-212ENST00000640313 HMGN4O00479 90 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 ARPC5O15511 151 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 IGLC1P0CG04 106 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 SCGB1A1P11684 91 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 NEFHP12036 1026 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 HIST1H1DP16402 221 aaKnown RBP-0.48□□□□□ -2.49
VPS35-212ENST00000640313 S100A5P33763 92 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 TPPP2P59282 170 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 CKS1BP61024 79 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 H1FX-AS1Q4G0G2 97 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 C9orf62Q8N4C0 152 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 KCNRGQ8N5I3 272 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 TSLPQ969D9 159 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 DYNLRB1Q9NP97 96 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 LINC00474Q9P2X8 69 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 COL12A1Q99715 3063 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 TSC2P49815 1807 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 PPIP5K1Q6PFW1 1433 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 MYH13Q9UKX3 1938 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 SHANK2Q9UPX8 1470 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 PKD1L2Q7Z442 2459 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 CHD7Q9P2D1 2997 aa-0.48□□□□□ -2.49
VPS35-212ENST00000640313 TRIOO75962 3097 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 LAMA3Q16787 3333 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 RIMS1Q86UR5 1692 aaKnown RBP-0.49□□□□□ -2.49
VPS35-212ENST00000640313 PRDM2Q13029 1718 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 ACACAQ13085 2346 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 CDK5RAP2Q96SN8 1893 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 K7ERU9 68 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 M0R2Z0 102 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 SFT2D2O95562 160 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 APOC3P02656 99 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 B2MP61769 119 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 RPS25P62851 125 aaKnown RBP-0.49□□□□□ -2.49
VPS35-212ENST00000640313 LELP1Q5T871 98 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 MRPL54Q6P161 138 aaKnown RBP-0.49□□□□□ -2.49
VPS35-212ENST00000640313 MYOZ3Q8TDC0 251 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 LCN9Q8WX39 176 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 MAFIPQ8WZ33 124 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 LINC01600Q96MT4 127 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 AQP10Q96PS8 301 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 MGST2Q99735 147 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 SPANXDQ9BXN6 97 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 TMEM191AQ9H0A3 160 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 NAA60Q9H7X0 242 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 CDC42SE2Q9NRR3 84 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 SPTBN5Q9NRC6 3674 aaKnown RBP-0.49□□□□□ -2.49
VPS35-212ENST00000640313 HMGXB3Q12766 1538 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 C5orf42Q9H799 3197 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 MTORP42345 2549 aa-0.49□□□□□ -2.49
VPS35-212ENST00000640313 USP9XQ93008 2570 aaPredicted RBP-0.5□□□□□ -2.49
VPS35-212ENST00000640313 RELNP78509 3460 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 BPTFQ12830 3046 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 PDE4DIPQ5VU43 2346 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 CCDC168Q8NDH2 2452 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 LOC285095A0A1B0GVY8 99 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 SYS1-DBNDD2H3BUS1 97 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 J3QR89 54 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 MGPP08493 103 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 COX8AP10176 69 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 COPZ1P61923 177 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 TCEAL4Q96EI5 215 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 USMG5Q96IX5 58 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 RERGLQ9H628 205 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 NXT2Q9NPJ8 142 aaKnown RBP-0.5□□□□□ -2.49
VPS35-212ENST00000640313 GSKIPQ9P0R6 139 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 SERP1Q9Y6X1 66 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 ANKRD30AQ9BXX3 1397 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 FHAD1B1AJZ9 1412 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 TROQ12816 1431 aaPredicted RBP-0.5□□□□□ -2.49
VPS35-212ENST00000640313 MAGI1Q96QZ7 1491 aaPredicted RBP-0.5□□□□□ -2.49
VPS35-212ENST00000640313 ARHGEF12Q9NZN5 1544 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 KIAA0556O60303 1618 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 RAPGEF6Q8TEU7 1601 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 KIF21AQ7Z4S6 1674 aa-0.5□□□□□ -2.49
VPS35-212ENST00000640313 LOC100130705A0A1B0GUX0 176 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 FAM186AA6NE01 2351 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 CHKB-CPT1BH3BT56 60 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 CEP290O15078 2479 aa-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms