RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SMAGPQ0VAQ4 97 aa11.88□□□□□ -0.51
SHKBP1-216ENST00000598201 TMEM101Q96IK0 257 aa11.88□□□□□ -0.51
SHKBP1-216ENST00000598201 CHCHD5Q9BSY4 110 aa11.88□□□□□ -0.51
SHKBP1-216ENST00000598201 C9orf118A6NHY6 69 aa11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 SMIM13P0DJ93 91 aa11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 FAM19A3Q7Z5A8 133 aa11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 C10orf126Q8N4M7 172 aa11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 RETNQ9HD89 108 aa11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 IGLV4-60A0A075B6I1 120 aa11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 SPART-AS1P0CW21 52 aa11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 SRSF9Q13242 221 aaKnown RBP eCLIP11.87□□□□□ -0.51
SHKBP1-216ENST00000598201 GAGE10A6NGK3 116 aa11.85□□□□□ -0.51
SHKBP1-216ENST00000598201 H3BUT2 72 aa11.85□□□□□ -0.51
SHKBP1-216ENST00000598201 K7EIL1 84 aa11.85□□□□□ -0.51
SHKBP1-216ENST00000598201 HERVK_113P63121 156 aa11.85□□□□□ -0.51
SHKBP1-216ENST00000598201 ATP5G1P05496 136 aa11.85□□□□□ -0.51
SHKBP1-216ENST00000598201 C12orf74Q32Q52 190 aa11.84□□□□□ -0.51
SHKBP1-216ENST00000598201 SPANXB1Q9NS25 103 aaPredicted RBP11.84□□□□□ -0.51
SHKBP1-216ENST00000598201 TRAV26-1A0A087WT03 109 aa11.83□□□□□ -0.52
SHKBP1-216ENST00000598201 A0A0J9YXY3 114 aa11.83□□□□□ -0.52
SHKBP1-216ENST00000598201 F5H768 121 aa11.83□□□□□ -0.52
SHKBP1-216ENST00000598201 DEFB121Q5J5C9 76 aa11.83□□□□□ -0.52
SHKBP1-216ENST00000598201 IGHV3-30P01768 117 aa11.82□□□□□ -0.52
SHKBP1-216ENST00000598201 IGHV3-30-5P0DP03 117 aa11.82□□□□□ -0.52
SHKBP1-216ENST00000598201 HTN3P15516 51 aa11.82□□□□□ -0.52
SHKBP1-216ENST00000598201 SIGMAR1Q99720 223 aa11.82□□□□□ -0.52
SHKBP1-216ENST00000598201 NDUFA12Q9UI09 145 aa11.82□□□□□ -0.52
SHKBP1-216ENST00000598201 IGKV3OR2-268A0A0C4DH90 116 aa11.82□□□□□ -0.52
SHKBP1-216ENST00000598201 A0A1B0GWB2 263 aa11.82□□□□□ -0.52
SHKBP1-216ENST00000598201 IGLV5-39A0A0G2JS06 123 aa11.81□□□□□ -0.52
SHKBP1-216ENST00000598201 MRAPQ8TCY5 172 aa11.81□□□□□ -0.52
SHKBP1-216ENST00000598201 MEGF8Q7Z7M0 2845 aa11.81□□□□□ -0.52
SHKBP1-216ENST00000598201 SMIM1B2RUZ4 78 aa11.8□□□□□ -0.52
SHKBP1-216ENST00000598201 K7EP34 96 aa11.8□□□□□ -0.52
SHKBP1-216ENST00000598201 ZFAND6Q6FIF0 208 aa11.8□□□□□ -0.52
SHKBP1-216ENST00000598201 MTURNQ8N3F0 131 aa11.8□□□□□ -0.52
SHKBP1-216ENST00000598201 LITAFQ99732 161 aa11.79□□□□□ -0.52
SHKBP1-216ENST00000598201 A0A1W2PPM0 123 aa11.79□□□□□ -0.52
SHKBP1-216ENST00000598201 TMEM262E9PQX1 116 aa11.79□□□□□ -0.52
SHKBP1-216ENST00000598201 IGLL5B9A064 214 aa11.77□□□□□ -0.52
SHKBP1-216ENST00000598201 FBN3Q75N90 2809 aa11.77□□□□□ -0.52
SHKBP1-216ENST00000598201 ADAMTSL4-AS1Q5T5F5 129 aa11.77□□□□□ -0.53
SHKBP1-216ENST00000598201 A0A1B0GUV1 79 aa11.75□□□□□ -0.53
SHKBP1-216ENST00000598201 NDUFA1O15239 70 aa11.75□□□□□ -0.53
SHKBP1-216ENST00000598201 TENM3Q9P273 2699 aa11.75□□□□□ -0.53
SHKBP1-216ENST00000598201 CKS1BP61024 79 aa11.75□□□□□ -0.53
SHKBP1-216ENST00000598201 MUSTN1Q8IVN3 82 aa11.75□□□□□ -0.53
SHKBP1-216ENST00000598201 Q8N3U1 123 aa11.75□□□□□ -0.53
SHKBP1-216ENST00000598201 TEX48A0A1B0GUV7 120 aa11.74□□□□□ -0.53
SHKBP1-216ENST00000598201 APOMO95445 188 aa11.74□□□□□ -0.53
SHKBP1-216ENST00000598201 MRPL23Q16540 153 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-216ENST00000598201 LINC00959A0A1B0GUT2 108 aa11.74□□□□□ -0.53
SHKBP1-216ENST00000598201 CFC1BP0CG36 223 aa11.74□□□□□ -0.53
SHKBP1-216ENST00000598201 CFC1P0CG37 223 aa11.74□□□□□ -0.53
SHKBP1-216ENST00000598201 Q9H8V8 135 aa11.74□□□□□ -0.53
SHKBP1-216ENST00000598201 IGHV3OR16-9A0A0B4J2B5 98 aa11.73□□□□□ -0.53
SHKBP1-216ENST00000598201 A4D1N5 150 aa11.72□□□□□ -0.53
SHKBP1-216ENST00000598201 EIF4EBP3O60516 100 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-216ENST00000598201 FABP2P12104 132 aa11.72□□□□□ -0.53
SHKBP1-216ENST00000598201 CLPSL2Q6UWE3 100 aa11.72□□□□□ -0.53
SHKBP1-216ENST00000598201 SPATA25Q9BR10 227 aa11.72□□□□□ -0.53
SHKBP1-216ENST00000598201 ICOSQ9Y6W8 199 aa11.72□□□□□ -0.53
SHKBP1-216ENST00000598201 SPCS1Q9Y6A9 102 aa11.72□□□□□ -0.53
SHKBP1-216ENST00000598201 ZNF625Q96I27 306 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-216ENST00000598201 C11orf68Q9H3H3 251 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-216ENST00000598201 PGPEP1Q9NXJ5 209 aa11.71□□□□□ -0.53
SHKBP1-216ENST00000598201 J3QR89 54 aa11.71□□□□□ -0.54
SHKBP1-216ENST00000598201 Q6ZTC4 211 aa11.71□□□□□ -0.54
SHKBP1-216ENST00000598201 SPANXDQ9BXN6 97 aa11.71□□□□□ -0.54
SHKBP1-216ENST00000598201 SPANXCQ9NY87 97 aa11.71□□□□□ -0.54
SHKBP1-216ENST00000598201 A0A0J9YWU9 116 aa11.7□□□□□ -0.54
SHKBP1-216ENST00000598201 PRSS2P07478 247 aa11.7□□□□□ -0.54
SHKBP1-216ENST00000598201 GAGE12HA6NDE8 117 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 RPL24P83731 157 aaKnown RBP11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 MIAQ16674 131 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 C5orf38Q86SI9 138 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 DAND5Q8N907 189 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 B9D2Q9BPU9 175 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 TIMM17BO60830 172 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 TSPAN13O95857 204 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 NPC2P61916 151 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 LINC00269Q8N2A0 174 aa11.69□□□□□ -0.54
SHKBP1-216ENST00000598201 A0A087WZ39 114 aa11.68□□□□□ -0.54
SHKBP1-216ENST00000598201 XCL1P47992 114 aa11.68□□□□□ -0.54
SHKBP1-216ENST00000598201 LELP1Q5T871 98 aa11.68□□□□□ -0.54
SHKBP1-216ENST00000598201 SH2D6Q7Z4S9 175 aa11.67□□□□□ -0.54
SHKBP1-216ENST00000598201 SS18Q15532 418 aa11.67□□□□□ -0.54
SHKBP1-216ENST00000598201 COX7B2Q8TF08 81 aa11.67□□□□□ -0.54
SHKBP1-216ENST00000598201 PRKDCP78527 4128 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-216ENST00000598201 A0A0U1RRA0 63 aa11.66□□□□□ -0.54
SHKBP1-216ENST00000598201 ANGP03950 147 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-216ENST00000598201 TOMM7Q9P0U1 55 aa11.66□□□□□ -0.54
SHKBP1-216ENST00000598201 NANOS2P60321 138 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-216ENST00000598201 LYPD5Q6UWN5 251 aa11.66□□□□□ -0.54
SHKBP1-216ENST00000598201 PRO1854Q9UHT4 67 aa11.66□□□□□ -0.54
SHKBP1-216ENST00000598201 SFTA2Q6UW10 78 aa11.65□□□□□ -0.54
SHKBP1-216ENST00000598201 A0A0B4J2C4 111 aa11.64□□□□□ -0.55
SHKBP1-216ENST00000598201 REG3AQ06141 175 aa11.64□□□□□ -0.55
SHKBP1-216ENST00000598201 CIRBPQ14011 172 aaKnown RBP11.64□□□□□ -0.55
SHKBP1-216ENST00000598201 H3BNG1 76 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms