RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SPANXN1Q5VSR9 72 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 LYZL1Q6UWQ5 148 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 MYOZ3Q8TDC0 251 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 ZCCHC13Q8WW36 166 aaKnown RBP2.11□□□□□ -2.07
LINC00560-201ENST00000564593 IFI27L1Q96BM0 104 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 GTSF1LQ9H1H1 148 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 MRPL36Q9P0J6 103 aaKnown RBP2.11□□□□□ -2.07
LINC00560-201ENST00000564593 HIGD1BQ9P298 99 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 NBASA2RRP1 2371 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 CFAP54Q96N23 3096 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 MYO18BQ8IUG5 2567 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 USP24Q9UPU5 2620 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 IGF2RP11717 2491 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 IGKV2-40A0A087WW87 121 aaPredicted RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 TRAV41A0A0B4J266 112 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 LINC01546A6NGU7 62 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 K7EP13 123 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 M0R381 172 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 IGKV2D-40P01614 121 aaPredicted RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 IGKCP01834 107 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 FABP2P12104 132 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 S100A4P26447 101 aaKnown RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 FCER1GP30273 86 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 BVES-AS1Q5T3Y7 98 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 GDF5OSQ5U4N7 250 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 ATOH7Q8N100 152 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 Q8N8P6 123 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 C20orf166-AS1Q96NR2 134 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 C20orf78Q9BR46 151 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 UFC1Q9Y3C8 167 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 TIMM8BQ9Y5J9 83 aaPredicted RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 SPTBN4Q9H254 2564 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 SPTAN1Q13813 2472 aaKnown RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 TMSB15BA0A087X1C1 80 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 TRAV12-1A0A0B4J245 112 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 OR11H12B2RN74 326 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 LYNX1G3V0Z9 82 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 H3BRM9 83 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 M0R3E3 92 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 IGHV1-69P01742 117 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 LYNX1P0DP58 116 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 IFI27P40305 119 aaPredicted RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 LINC00313P59037 77 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 SNRPD3P62318 126 aaKnown RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 KLRD1Q13241 179 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 TDRG1Q3Y452 100 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 MRPL51Q4U2R6 128 aaKnown RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 LINC00322Q6ZN03 302 aaPredicted RBP2.1□□□□□ -2.07
LINC00560-201ENST00000564593 ZFAND2AQ8N6M9 145 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 C5orf56Q8N8D9 126 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 OR11H1Q8NG94 326 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 OR11H2Q8NH07 326 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 ODF3Q96PU9 254 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 CCL19Q99731 98 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 SMIM2Q9BVW6 85 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 DPH3P1Q9H4G8 78 aa2.1□□□□□ -2.07
LINC00560-201ENST00000564593 FRYQ5TBA9 3013 aa2.09□□□□□ -2.07
LINC00560-201ENST00000564593 FREM2Q5SZK8 3169 aa2.09□□□□□ -2.07
LINC00560-201ENST00000564593 ARHGAP32A7KAX9 2087 aa2.09□□□□□ -2.07
LINC00560-201ENST00000564593 MUC21A0A0G2JKD1 596 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 MUC21A0A140T8X8 626 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 B4DSR2 109 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 F8VRH5 84 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 NPYP01303 97 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 SMIM13P0DJ93 91 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 FGF6P10767 208 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 EVI2AP22794 236 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 FUSP35637 526 aaKnown RBP eCLIP2.09□□□□□ -2.08
LINC00560-201ENST00000564593 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 SMIM20Q8N5G0 67 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 Q8TAT8 98 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 VPS25Q9BRG1 176 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 BPESC1Q9GZL8 116 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 CYSLTR1Q9Y271 337 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 PKIGQ9Y2B9 76 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 AKAP13Q12802 2813 aa2.09□□□□□ -2.08
LINC00560-201ENST00000564593 NBEAQ8NFP9 2946 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 CREBBPQ92793 2442 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 A0A087WX48 190 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 K7EP34 96 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 MSMBP08118 114 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 CRIP1P50238 77 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 TCTAP57738 103 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 HERVK_113P63121 156 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 DYNAPQ8N1N2 210 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 COPS9Q8WXC6 57 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 TMEM141Q96I45 108 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 SCGB3A1Q96QR1 104 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 SPEGQ15772 3267 aa2.08□□□□□ -2.08
LINC00560-201ENST00000564593 AKAP6Q13023 2319 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 TRAV2A0A0B4J234 112 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 FAM236DA0A1B0GTK5 79 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 A0A1W2PPM0 123 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 H3BVH4 76 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 TAX1BP3O14907 124 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 NCR2O95944 276 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 MGPP08493 103 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 FAM236CP0DP71 79 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 CD24P25063 80 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 RHOHQ15669 191 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms