RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CCDC168Q8NDH2 2452 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 CHKB-CPT1BH3BT56 60 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 Q6JHZ5 121 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 WFDC9Q8NEX5 89 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 C1orf134Q5TEV5 83 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 DAZ2Q13117 558 aaKnown RBP3.85□□□□□ -1.79
SYNE1-220ENST00000471834 DAZ4Q86SG3 579 aaKnown RBP3.85□□□□□ -1.79
SYNE1-220ENST00000471834 SPATA3Q8NHX4 192 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 DAZ3Q9NR90 486 aaKnown RBP3.85□□□□□ -1.79
SYNE1-220ENST00000471834 DEFB131BA0A096LNP1 70 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 A0A1W2PPR1 153 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 A6NDX4 124 aa3.85□□□□□ -1.79
SYNE1-220ENST00000471834 A0A0J9YXV3 536 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 COX7CP15954 63 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 CCDC179H3BU77 68 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 RBM3P98179 157 aaKnown RBP3.84□□□□□ -1.79
SYNE1-220ENST00000471834 CEMP1Q6PRD7 247 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-220ENST00000471834 NBASA2RRP1 2371 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 ITPR1Q14643 2758 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 ATP5EP2Q5VTU8 51 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 MUC7Q8TAX7 377 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 NDUFA7O95182 113 aa3.84□□□□□ -1.79
SYNE1-220ENST00000471834 A0A096LNT2 108 aa3.84□□□□□ -1.8
SYNE1-220ENST00000471834 SOSTDC1Q6X4U4 206 aa3.84□□□□□ -1.8
SYNE1-220ENST00000471834 LINC00612Q8N6U2 182 aa3.84□□□□□ -1.8
SYNE1-220ENST00000471834 LAMA3Q16787 3333 aa3.84□□□□□ -1.8
SYNE1-220ENST00000471834 B9D2Q9BPU9 175 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 TRBV10-1A0A0K0K1A3 114 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 Q8N2B8 174 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 CAMK2N2Q96S95 79 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 TNRC18O15417 2968 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-220ENST00000471834 ETDCA0A1B0GVM5 59 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 C14orf132Q9NPU4 83 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 LINC00242Q5T6M2 205 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 LINC00482Q8N8I6 264 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 MKI67P46013 3256 aaKnown RBP3.83□□□□□ -1.8
SYNE1-220ENST00000471834 SMIM1B2RUZ4 78 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 LINC00308Q8TCZ7 52 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 SND1-IT1Q9HBX3 110 aa3.83□□□□□ -1.8
SYNE1-220ENST00000471834 A0A0U1RQV1 116 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 PLA2G1BP04054 148 aaKnown RBP3.82□□□□□ -1.8
SYNE1-220ENST00000471834 FREM2Q5SZK8 3169 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 C5orf42Q9H799 3197 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 FLNCQ14315 2725 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 PIEZO1Q92508 2521 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 UNQ9165/PRO28630Q6UXU0 137 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 ABCA2Q9BZC7 2435 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 IGF2RP11717 2491 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 HIGD2BQ4VC39 106 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 FRYQ5TBA9 3013 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 AKAP13Q12802 2813 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 LCE6AA0A183 80 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 TEX49A0A1B0GTD5 131 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 FAM236AA0A1B0GUQ0 79 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 FAM236BA0A1B0GV22 79 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 KLKP1Q107X0 134 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 SMCR5Q8TEV8 140 aa3.82□□□□□ -1.8
SYNE1-220ENST00000471834 HRCT1Q6UXD1 115 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 NACAE9PAV3 2078 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 IGHV4-31P0DP07 118 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 LRRK2Q5S007 2527 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 PSMB8P28062 276 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 C3orf22Q8N5N4 141 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 CELA1Q9UNI1 258 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 MUC4Q99102 2169 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 MPLKIPQ8TAP9 179 aa3.81□□□□□ -1.8
SYNE1-220ENST00000471834 LAMA1P25391 3075 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 IGLV5-52A0A0A0MRZ9 124 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 H0Y9J4 135 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 C3orf84H3BNL1 204 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 SLPIP03973 132 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 CHD8Q9HCK8 2581 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 C16orf90A8MZG2 172 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 C19orf84I3L1E1 186 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 A0A0J9YWU9 116 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 ZFHX2Q9C0A1 2572 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-220ENST00000471834 PTPN13Q12923 2485 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 A0A087WZ39 114 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 PROK1P58294 105 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 BRK1Q8WUW1 75 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 MAP6D1Q9H9H5 199 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 IGHV3OR16-9A0A0B4J2B5 98 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 IGKV2-24A0A0C4DH68 120 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 SCXQ7RTU7 201 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 SPG11Q96JI7 2443 aa3.8□□□□□ -1.8
SYNE1-220ENST00000471834 COX6B2Q6YFQ2 88 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 FRYLO94915 3013 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 C1orf195Q5TG92 126 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 C18orf65Q6ZTR6 163 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 MIR7-3HGQ8N6C7 128 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 TRAV23DV6A0A075B6W5 121 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 H0YGX0 51 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 NANOS2P60321 138 aaKnown RBP3.79□□□□□ -1.8
SYNE1-220ENST00000471834 KLK12Q9UKR0 248 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 ATOX1O00244 68 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 DEFB114Q30KQ6 69 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 Q5XG85 94 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 LINC00269Q8N2A0 174 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 OXTP01178 125 aa3.79□□□□□ -1.8
SYNE1-220ENST00000471834 LECT2O14960 151 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms