RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 UBE2AP49459 152 aa8.48□□□□□ -1.05
VPS39-201ENST00000318006 DEFB4AO15263 64 aa8.48□□□□□ -1.05
VPS39-201ENST00000318006 Q6ZSV7 163 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 UBE2D4Q9Y2X8 147 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 MIFP14174 115 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 PROK1P58294 105 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 CDIP1Q9H305 208 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 IGKV4-1P06312 121 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 LYRM9A8MSI8 78 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 Q6ZQY7 126 aa8.47□□□□□ -1.05
VPS39-201ENST00000318006 CSDC2Q9Y534 153 aaKnown RBP8.47□□□□□ -1.05
VPS39-201ENST00000318006 COL5A1P20908 1838 aaPredicted RBP8.46□□□□□ -1.06
VPS39-201ENST00000318006 BPTFQ12830 3046 aa8.46□□□□□ -1.06
VPS39-201ENST00000318006 CRYGDP07320 174 aa8.46□□□□□ -1.06
VPS39-201ENST00000318006 CCL18P55774 89 aa8.46□□□□□ -1.06
VPS39-201ENST00000318006 SEC61GP60059 68 aa8.46□□□□□ -1.06
VPS39-201ENST00000318006 A6NED7 52 aa8.45□□□□□ -1.06
VPS39-201ENST00000318006 PSMG3-AS1Q96PY0 264 aa8.45□□□□□ -1.06
VPS39-201ENST00000318006 IGLV4-69A0A075B6H9 119 aa8.45□□□□□ -1.06
VPS39-201ENST00000318006 A0A087WVE0 104 aa8.45□□□□□ -1.06
VPS39-201ENST00000318006 TRBV6-8A0A0A6YYG3 113 aa8.45□□□□□ -1.06
VPS39-201ENST00000318006 KLLNB2CW77 178 aa8.45□□□□□ -1.06
VPS39-201ENST00000318006 C9orf85Q96MD7 179 aa8.45□□□□□ -1.06
VPS39-201ENST00000318006 KLK5Q9Y337 293 aaPredicted RBP8.44□□□□□ -1.06
VPS39-201ENST00000318006 ZNF702PQ9H963 129 aa8.44□□□□□ -1.06
VPS39-201ENST00000318006 C3orf84H3BNL1 204 aa8.43□□□□□ -1.06
VPS39-201ENST00000318006 EXPH5Q8NEV8 1989 aa8.43□□□□□ -1.06
VPS39-201ENST00000318006 TRBV6-4A0A1B0GX49 114 aa8.43□□□□□ -1.06
VPS39-201ENST00000318006 TSPEAR-AS2P59090 65 aa8.43□□□□□ -1.06
VPS39-201ENST00000318006 C1orf158Q8N1D5 194 aa8.43□□□□□ -1.06
VPS39-201ENST00000318006 USP9XQ93008 2570 aaPredicted RBP8.43□□□□□ -1.06
VPS39-201ENST00000318006 LOC107984640A0A0U1RRK4 108 aa8.43□□□□□ -1.06
VPS39-201ENST00000318006 IGLV1-40P01703 118 aa8.43□□□□□ -1.06
VPS39-201ENST00000318006 PPDPFQ9H3Y8 114 aa8.42□□□□□ -1.06
VPS39-201ENST00000318006 PRRC2AP48634 2157 aaKnown RBP8.42□□□□□ -1.06
VPS39-201ENST00000318006 XAGE1AQ9HD64 81 aa8.42□□□□□ -1.06
VPS39-201ENST00000318006 TLN2Q9Y4G6 2542 aa8.42□□□□□ -1.06
VPS39-201ENST00000318006 RPL28P46779 137 aaKnown RBP8.42□□□□□ -1.06
VPS39-201ENST00000318006 SHISA2Q6UWI4 295 aa8.42□□□□□ -1.06
VPS39-201ENST00000318006 PRR4Q16378 134 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 WFDC10BQ8IUB3 73 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 TRANK1O15050 2925 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 NTM-AS1Q6ZSK4 140 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 DCANP1Q8TF63 244 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 SPTBN4Q9H254 2564 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 CPAMD8Q8IZJ3 1885 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 TRBV7-7A0A0K0K1E9 115 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 HIGD2AQ9BW72 106 aa8.41□□□□□ -1.06
VPS39-201ENST00000318006 SOSTDC1Q6X4U4 206 aa8.4□□□□□ -1.06
VPS39-201ENST00000318006 INAFM1C9JVW0 142 aa8.4□□□□□ -1.06
VPS39-201ENST00000318006 F8W735 103 aaPredicted RBP8.4□□□□□ -1.06
VPS39-201ENST00000318006 COX8CQ7Z4L0 72 aa8.4□□□□□ -1.06
VPS39-201ENST00000318006 AVPP01185 164 aa8.39□□□□□ -1.07
VPS39-201ENST00000318006 B9D2Q9BPU9 175 aa8.39□□□□□ -1.07
VPS39-201ENST00000318006 USP9YO00507 2555 aaPredicted RBP8.39□□□□□ -1.07
VPS39-201ENST00000318006 IGLV2-18A0A075B6J9 118 aa8.39□□□□□ -1.07
VPS39-201ENST00000318006 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.39□□□□□ -1.07
VPS39-201ENST00000318006 PRR15LQ9BU68 103 aa8.38□□□□□ -1.07
VPS39-201ENST00000318006 A0A1W2PPR1 153 aa8.38□□□□□ -1.07
VPS39-201ENST00000318006 PMAIP1Q13794 54 aa8.38□□□□□ -1.07
VPS39-201ENST00000318006 CD164L2Q6UWJ8 174 aa8.38□□□□□ -1.07
VPS39-201ENST00000318006 LINC00242Q5T6M2 205 aa8.38□□□□□ -1.07
VPS39-201ENST00000318006 LINC01006Q8NI28 216 aa8.38□□□□□ -1.07
VPS39-201ENST00000318006 ADAMTSL4-AS1Q5T5F5 129 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 ABCA12Q86UK0 2595 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 COX17Q14061 63 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 WFDC13Q8IUB5 93 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 UNC80Q8N2C7 3258 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 LINC00959A0A1B0GUT2 108 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 CDC42SE2Q9NRR3 84 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 CHD8Q9HCK8 2581 aa8.37□□□□□ -1.07
VPS39-201ENST00000318006 SMIM1B2RUZ4 78 aa8.36□□□□□ -1.07
VPS39-201ENST00000318006 C18orf65Q6ZTR6 163 aa8.36□□□□□ -1.07
VPS39-201ENST00000318006 MUC7Q8TAX7 377 aa8.36□□□□□ -1.07
VPS39-201ENST00000318006 FAM30AQ9NZY2 134 aa8.36□□□□□ -1.07
VPS39-201ENST00000318006 JMJD1CQ15652 2540 aa8.36□□□□□ -1.07
VPS39-201ENST00000318006 M0R378 163 aa8.36□□□□□ -1.07
VPS39-201ENST00000318006 ADAMTS20P59510 1910 aa8.36□□□□□ -1.07
VPS39-201ENST00000318006 Q8N814 137 aa8.35□□□□□ -1.07
VPS39-201ENST00000318006 PRYO14603 147 aa8.35□□□□□ -1.07
VPS39-201ENST00000318006 Q8IZM0 81 aa8.35□□□□□ -1.07
VPS39-201ENST00000318006 PRO0628Q9UI54 55 aa8.35□□□□□ -1.07
VPS39-201ENST00000318006 A0A087WYN8 130 aa8.35□□□□□ -1.07
VPS39-201ENST00000318006 ZNF73O43830 326 aaPredicted RBP8.35□□□□□ -1.07
VPS39-201ENST00000318006 PRRC2CQ9Y520 2896 aaKnown RBP8.35□□□□□ -1.07
VPS39-201ENST00000318006 CASC2Q6XLA1 102 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 FAM19A1Q7Z5A9 133 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 DHRS4-AS1Q9P1J3 65 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 Q8N3U1 123 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 CDH23Q9H251 3354 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 PRUNE2Q8WUY3 3088 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 LY6G6DO95868 133 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 LINC00482Q8N8I6 264 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 C11orf45Q8TAV5 145 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 CELA1Q9UNI1 258 aa8.34□□□□□ -1.07
VPS39-201ENST00000318006 LRCOL1A6NCL2 159 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 AMELXQ99217 191 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 A0A096LNI7 61 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 IGKV2-24A0A0C4DH68 120 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 SMCPP49901 116 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms