RNA–Protein interactions for RNA: YOR138C

RUP1, Transcript of Protein that regulates ubiquitination of Rsp5p, yeastyeast

Gene RUP1, Length 2,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUP1YOR138C VPS15P22219 1454 aa10.19□□□□□ -0.78
RUP1YOR138C BFR2Q06631 534 aaKnown RBP10.19□□□□□ -0.78
RUP1YOR138C CDC25P04821 1589 aa10.17□□□□□ -0.78
RUP1YOR138C SNT2P53127 1403 aa10.16□□□□□ -0.78
RUP1YOR138C ENP1P38333 483 aaKnown RBP10.13□□□□□ -0.79
RUP1YOR138C ESC1Q03661 1658 aaKnown RBP10.13□□□□□ -0.79
RUP1YOR138C YBT1P32386 1661 aa10.12□□□□□ -0.79
RUP1YOR138C TY1B-JR2P47100 1755 aaKnown RBP10.11□□□□□ -0.79
RUP1YOR138C TY1B-ER2Q03619 1755 aa10.11□□□□□ -0.79
RUP1YOR138C TY1B-MR1Q04214 1755 aa10.11□□□□□ -0.79
RUP1YOR138C TY1B-MR2Q04670 1755 aaKnown RBP10.11□□□□□ -0.79
RUP1YOR138C TY1B-LR1Q12088 1755 aaKnown RBP10.11□□□□□ -0.79
RUP1YOR138C TY1B-NL1Q12112 1755 aa10.11□□□□□ -0.79
RUP1YOR138C TY1B-GR1Q12141 1755 aa10.11□□□□□ -0.79
RUP1YOR138C TY1B-BLQ12490 1755 aa10.11□□□□□ -0.79
RUP1YOR138C DNF1P32660 1571 aa10.1□□□□□ -0.79
RUP1YOR138C SPT7P35177 1332 aa10.09□□□□□ -0.79
RUP1YOR138C GEA2P39993 1459 aaKnown RBP10.07□□□□□ -0.8
RUP1YOR138C CAT8P39113 1433 aa10.06□□□□□ -0.8
RUP1YOR138C CKB1P43639 278 aa10.06□□□□□ -0.8
RUP1YOR138C PDR10P51533 1564 aa10.04□□□□□ -0.8
RUP1YOR138C IRC20Q06554 1556 aa10.04□□□□□ -0.8
RUP1YOR138C SEC3P33332 1336 aaKnown RBP10.03□□□□□ -0.8
RUP1YOR138C SRB8P25648 1427 aa10.02□□□□□ -0.81
RUP1YOR138C NTE1Q04958 1679 aa10.02□□□□□ -0.81
RUP1YOR138C GDB1Q06625 1536 aa10.02□□□□□ -0.81
RUP1YOR138C RPO21P04050 1733 aaKnown RBP9.99□□□□□ -0.81
RUP1YOR138C LEU3P08638 886 aa9.98□□□□□ -0.81
RUP1YOR138C TFA1P36100 482 aa9.98□□□□□ -0.81
RUP1YOR138C NOP7P53261 605 aaKnown RBP9.98□□□□□ -0.81
RUP1YOR138C ARO1P08566 1588 aaKnown RBP9.97□□□□□ -0.81
RUP1YOR138C NUP159P40477 1460 aa9.97□□□□□ -0.81
RUP1YOR138C RPA190P10964 1664 aaKnown RBP9.96□□□□□ -0.81
RUP1YOR138C BUD21Q08492 214 aaPredicted RBP9.95□□□□□ -0.82
RUP1YOR138C ORC1P54784 914 aaPredicted RBP9.94□□□□□ -0.82
RUP1YOR138C GCN2P15442 1659 aa9.94□□□□□ -0.82
RUP1YOR138C BUD3P25558 1636 aa9.9□□□□□ -0.82
RUP1YOR138C NUP157P40064 1391 aaKnown RBP9.9□□□□□ -0.83
RUP1YOR138C MET10P39692 1035 aa9.89□□□□□ -0.83
RUP1YOR138C PAF1P38351 445 aa9.86□□□□□ -0.83
RUP1YOR138C PSD2P53037 1138 aaKnown RBP9.86□□□□□ -0.83
RUP1YOR138C SPO14P36126 1683 aa9.85□□□□□ -0.83
RUP1YOR138C PRS1P32895 427 aaKnown RBP9.84□□□□□ -0.83
RUP1YOR138C IQG1Q12280 1495 aa9.83□□□□□ -0.84
RUP1YOR138C MHP1P43638 1398 aa9.83□□□□□ -0.84
RUP1YOR138C PDR12Q02785 1511 aa9.82□□□□□ -0.84
RUP1YOR138C MMS1Q06211 1407 aa9.82□□□□□ -0.84
RUP1YOR138C YSP2Q06681 1438 aa9.8□□□□□ -0.84
RUP1YOR138C PDR5P33302 1511 aaKnown RBP9.75□□□□□ -0.85
RUP1YOR138C YRF1-1P0CX20 1796 aa9.75□□□□□ -0.85
RUP1YOR138C YRF1-5P0CX21 1796 aa9.75□□□□□ -0.85
RUP1YOR138C YRF1-8P0CX22 1796 aa9.75□□□□□ -0.85
RUP1YOR138C YOR093CQ12275 1648 aa9.73□□□□□ -0.85
RUP1YOR138C LTE1P07866 1435 aa9.72□□□□□ -0.85
RUP1YOR138C BNR1P40450 1375 aa9.72□□□□□ -0.85
RUP1YOR138C TAF5P38129 798 aa9.72□□□□□ -0.85
RUP1YOR138C PDS5Q04264 1277 aa9.71□□□□□ -0.86
RUP1YOR138C YLR419WQ06698 1435 aaKnown RBP9.71□□□□□ -0.86
RUP1YOR138C KIP3P53086 805 aaKnown RBP9.66□□□□□ -0.86
RUP1YOR138C TY3B-IQ7LHG5 1498 aaKnown RBP9.66□□□□□ -0.86
RUP1YOR138C MIF2P35201 549 aa9.65□□□□□ -0.86
RUP1YOR138C AVT3P36062 692 aa9.65□□□□□ -0.86
RUP1YOR138C NST1P53935 1240 aa9.65□□□□□ -0.86
RUP1YOR138C RAV1P47104 1357 aa9.65□□□□□ -0.86
RUP1YOR138C CHC1P22137 1653 aaKnown RBP9.64□□□□□ -0.87
RUP1YOR138C RTC1Q08281 1341 aa9.64□□□□□ -0.87
RUP1YOR138C FUN12P39730 1002 aaKnown RBP9.63□□□□□ -0.87
RUP1YOR138C MET5P47169 1442 aa9.63□□□□□ -0.87
RUP1YOR138C PDR11P40550 1411 aa9.62□□□□□ -0.87
RUP1YOR138C CFT1Q06632 1357 aaKnown RBP9.62□□□□□ -0.87
RUP1YOR138C DRS2P39524 1355 aa9.6□□□□□ -0.87
RUP1YOR138C ESL2P36168 1195 aa9.6□□□□□ -0.87
RUP1YOR138C DIP2Q12220 943 aaPredicted RBP9.6□□□□□ -0.87
RUP1YOR138C SEC7P11075 2009 aaKnown RBP9.59□□□□□ -0.87
RUP1YOR138C VMR1P38735 1592 aa9.57□□□□□ -0.88
RUP1YOR138C IML1P47170 1584 aa9.54□□□□□ -0.88
RUP1YOR138C SPE2P21182 396 aa9.53□□□□□ -0.88
RUP1YOR138C DOP1Q03921 1698 aa9.51□□□□□ -0.89
RUP1YOR138C SCT1P32784 759 aa9.5□□□□□ -0.89
RUP1YOR138C NUP188P52593 1655 aaKnown RBP9.5□□□□□ -0.89
RUP1YOR138C RTG3P38165 486 aa9.49□□□□□ -0.89
RUP1YOR138C NUP192P47054 1683 aa9.49□□□□□ -0.89
RUP1YOR138C CDC45Q08032 650 aa9.49□□□□□ -0.89
RUP1YOR138C VPS27P40343 622 aaKnown RBP9.48□□□□□ -0.89
RUP1YOR138C RVB2Q12464 471 aaKnown RBP9.48□□□□□ -0.89
RUP1YOR138C RPC31P17890 251 aa9.47□□□□□ -0.89
RUP1YOR138C TAF8Q03750 510 aa9.46□□□□□ -0.9
RUP1YOR138C FPR3P38911 411 aaKnown RBP9.45□□□□□ -0.9
RUP1YOR138C YDL144CQ07589 356 aa9.45□□□□□ -0.9
RUP1YOR138C RPP0P05317 312 aaKnown RBP9.44□□□□□ -0.9
RUP1YOR138C CHZ1P40019 153 aaPredicted RBP9.44□□□□□ -0.9
RUP1YOR138C YAP3P38749 330 aa9.44□□□□□ -0.9
RUP1YOR138C TYS1P36421 394 aaKnown RBP9.43□□□□□ -0.9
RUP1YOR138C TRM3Q07527 1436 aa9.43□□□□□ -0.9
RUP1YOR138C TRK1P12685 1235 aa9.41□□□□□ -0.9
RUP1YOR138C RAD9P14737 1309 aa9.41□□□□□ -0.9
RUP1YOR138C YFR016CP43597 1233 aaKnown RBP9.4□□□□□ -0.9
RUP1YOR138C MLP1Q02455 1875 aaKnown RBP9.4□□□□□ -0.9
RUP1YOR138C DNF2Q12675 1612 aa9.39□□□□□ -0.91
RUP1YOR138C FKH1P40466 484 aa9.38□□□□□ -0.91
Retrieved 100 of 5,963 RNA–protein pairs in 59.6 ms