RNA–Protein interactions for RNA: YOR018W

ROD1, Transcript of Alpha-arrestin involved in ubiquitin-dependent endocytosis, yeastyeast

Gene ROD1, Length 2,514 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROD1YOR018W HAA1Q12753 694 aaKnown RBP5.89□□□□□ -1.47
ROD1YOR018W RPA190P10964 1664 aaKnown RBP5.88□□□□□ -1.47
ROD1YOR018W TY1B-JR2P47100 1755 aaKnown RBP5.87□□□□□ -1.47
ROD1YOR018W TY1B-ER2Q03619 1755 aa5.87□□□□□ -1.47
ROD1YOR018W TY1B-MR1Q04214 1755 aa5.87□□□□□ -1.47
ROD1YOR018W TY1B-MR2Q04670 1755 aaKnown RBP5.87□□□□□ -1.47
ROD1YOR018W TY1B-LR1Q12088 1755 aaKnown RBP5.87□□□□□ -1.47
ROD1YOR018W TY1B-NL1Q12112 1755 aa5.87□□□□□ -1.47
ROD1YOR018W TY1B-GR1Q12141 1755 aa5.87□□□□□ -1.47
ROD1YOR018W TY1B-BLQ12490 1755 aa5.87□□□□□ -1.47
ROD1YOR018W SPT21P35209 758 aa5.87□□□□□ -1.47
ROD1YOR018W TRM732Q03496 1420 aa5.86□□□□□ -1.47
ROD1YOR018W IFH1P39520 1085 aa5.86□□□□□ -1.47
ROD1YOR018W PDR15Q04182 1529 aaKnown RBP5.84□□□□□ -1.47
ROD1YOR018W ULS1Q08562 1619 aa5.83□□□□□ -1.48
ROD1YOR018W SNT2P53127 1403 aa5.82□□□□□ -1.48
ROD1YOR018W NUP159P40477 1460 aa5.81□□□□□ -1.48
ROD1YOR018W RIM101P33400 625 aa5.8□□□□□ -1.48
ROD1YOR018W MLP2P40457 1679 aa5.8□□□□□ -1.48
ROD1YOR018W NTE1Q04958 1679 aa5.8□□□□□ -1.48
ROD1YOR018W YRF1-1P0CX20 1796 aa5.8□□□□□ -1.48
ROD1YOR018W YRF1-5P0CX21 1796 aa5.8□□□□□ -1.48
ROD1YOR018W YRF1-8P0CX22 1796 aa5.8□□□□□ -1.48
ROD1YOR018W GEA1P47102 1408 aaPredicted RBP5.77□□□□□ -1.49
ROD1YOR018W MET5P47169 1442 aa5.77□□□□□ -1.49
ROD1YOR018W RTT106P40161 455 aa5.77□□□□□ -1.49
ROD1YOR018W TY3B-GQ99315 1547 aa5.77□□□□□ -1.49
ROD1YOR018W RPO21P04050 1733 aaKnown RBP5.77□□□□□ -1.49
ROD1YOR018W REB1P21538 810 aa5.75□□□□□ -1.49
ROD1YOR018W VPS15P22219 1454 aa5.73□□□□□ -1.49
ROD1YOR018W GDB1Q06625 1536 aa5.72□□□□□ -1.49
ROD1YOR018W SPO14P36126 1683 aa5.72□□□□□ -1.49
ROD1YOR018W GEA2P39993 1459 aaKnown RBP5.72□□□□□ -1.49
ROD1YOR018W MET10P39692 1035 aa5.72□□□□□ -1.49
ROD1YOR018W TAF7Q05021 590 aa5.72□□□□□ -1.49
ROD1YOR018W IRC20Q06554 1556 aa5.71□□□□□ -1.5
ROD1YOR018W ITT1Q04638 464 aa5.71□□□□□ -1.5
ROD1YOR018W SSM4P40318 1319 aa5.7□□□□□ -1.5
ROD1YOR018W NUP157P40064 1391 aaKnown RBP5.7□□□□□ -1.5
ROD1YOR018W BUD3P25558 1636 aa5.69□□□□□ -1.5
ROD1YOR018W DMA1P38823 416 aa5.69□□□□□ -1.5
ROD1YOR018W PTP3P40048 928 aa5.69□□□□□ -1.5
ROD1YOR018W PDR10P51533 1564 aa5.68□□□□□ -1.5
ROD1YOR018W CKB1P43639 278 aa5.68□□□□□ -1.5
ROD1YOR018W YBT1P32386 1661 aa5.68□□□□□ -1.5
ROD1YOR018W TSR3Q12094 313 aaKnown RBP5.68□□□□□ -1.5
ROD1YOR018W OXP1P28273 1286 aa5.67□□□□□ -1.5
ROD1YOR018W PDR12Q02785 1511 aa5.67□□□□□ -1.5
ROD1YOR018W IKI3Q06706 1349 aaKnown RBP5.66□□□□□ -1.5
ROD1YOR018W BNI1P41832 1953 aa5.66□□□□□ -1.5
ROD1YOR018W LTE1P07866 1435 aa5.65□□□□□ -1.5
ROD1YOR018W ARO1P08566 1588 aaKnown RBP5.63□□□□□ -1.51
ROD1YOR018W YCK3P39962 524 aa5.63□□□□□ -1.51
ROD1YOR018W YSP2Q06681 1438 aa5.62□□□□□ -1.51
ROD1YOR018W NUP170P38181 1502 aa5.61□□□□□ -1.51
ROD1YOR018W YKR023WP36119 530 aaKnown RBP5.6□□□□□ -1.51
ROD1YOR018W DRS2P39524 1355 aa5.6□□□□□ -1.51
ROD1YOR018W CAT8P39113 1433 aa5.6□□□□□ -1.51
ROD1YOR018W IQG1Q12280 1495 aa5.6□□□□□ -1.51
ROD1YOR018W SSP1P38871 571 aa5.59□□□□□ -1.51
ROD1YOR018W DOP1Q03921 1698 aa5.56□□□□□ -1.52
ROD1YOR018W SRB8P25648 1427 aa5.56□□□□□ -1.52
ROD1YOR018W MMS1Q06211 1407 aa5.56□□□□□ -1.52
ROD1YOR018W YLR271WQ06152 274 aa5.54□□□□□ -1.52
ROD1YOR018W BNR1P40450 1375 aa5.54□□□□□ -1.52
ROD1YOR018W BUD21Q08492 214 aaPredicted RBP5.53□□□□□ -1.52
ROD1YOR018W SEC7P11075 2009 aaKnown RBP5.5□□□□□ -1.53
ROD1YOR018W YAH1Q12184 172 aaKnown RBP5.48□□□□□ -1.53
ROD1YOR018W PDR11P40550 1411 aa5.48□□□□□ -1.53
ROD1YOR018W CHC1P22137 1653 aaKnown RBP5.47□□□□□ -1.53
ROD1YOR018W ABP1P15891 592 aaKnown RBP5.47□□□□□ -1.53
ROD1YOR018W TYS1P36421 394 aaKnown RBP5.47□□□□□ -1.53
ROD1YOR018W DNF2Q12675 1612 aa5.46□□□□□ -1.54
ROD1YOR018W PDR5P33302 1511 aaKnown RBP5.46□□□□□ -1.54
ROD1YOR018W TRM3Q07527 1436 aa5.46□□□□□ -1.54
ROD1YOR018W VMR1P38735 1592 aa5.46□□□□□ -1.54
ROD1YOR018W YOR093CQ12275 1648 aa5.46□□□□□ -1.54
ROD1YOR018W TFC8Q12308 588 aa5.45□□□□□ -1.54
ROD1YOR018W MRPL32P25348 183 aa5.44□□□□□ -1.54
ROD1YOR018W HOP09932 586 aa5.42□□□□□ -1.54
ROD1YOR018W DCD1P06773 312 aa5.41□□□□□ -1.54
ROD1YOR018W CDC27P38042 758 aa5.4□□□□□ -1.55
ROD1YOR018W YAP3P38749 330 aa5.4□□□□□ -1.55
ROD1YOR018W IPL1P38991 367 aa5.4□□□□□ -1.55
ROD1YOR018W ORC1P54784 914 aaPredicted RBP5.4□□□□□ -1.55
ROD1YOR018W CST9Q06032 482 aa5.39□□□□□ -1.55
ROD1YOR018W GCN2P15442 1659 aa5.39□□□□□ -1.55
ROD1YOR018W RSM7P47150 247 aa5.38□□□□□ -1.55
ROD1YOR018W YIL055CP40523 627 aaKnown RBP5.38□□□□□ -1.55
ROD1YOR018W MGA2P40578 1113 aa5.38□□□□□ -1.55
ROD1YOR018W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.38□□□□□ -1.55not detected
ROD1YOR018W IML1P47170 1584 aa5.38□□□□□ -1.55
ROD1YOR018W NUP188P52593 1655 aaKnown RBP5.37□□□□□ -1.55
ROD1YOR018W PSD2P53037 1138 aaKnown RBP5.37□□□□□ -1.55
ROD1YOR018W YGL015CP33199 130 aa5.34□□□□□ -1.55
ROD1YOR018W NOP7P53261 605 aaKnown RBP5.34□□□□□ -1.55
ROD1YOR018W RAV1P47104 1357 aa5.33□□□□□ -1.56
ROD1YOR018W DNF3Q12674 1656 aa5.33□□□□□ -1.56
ROD1YOR018W TAF5P38129 798 aa5.33□□□□□ -1.56
ROD1YOR018W RAD9P14737 1309 aa5.33□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 21.5 ms