RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C PDR12Q02785 1511 aa5.68□□□□□ -1.5
SSM4YIL030C PDR15Q04182 1529 aaKnown RBP5.68□□□□□ -1.5
SSM4YIL030C TAF2P23255 1407 aa5.67□□□□□ -1.5
SSM4YIL030C IKI3Q06706 1349 aaKnown RBP5.65□□□□□ -1.51
SSM4YIL030C IQG1Q12280 1495 aa5.65□□□□□ -1.51
SSM4YIL030C SPO14P36126 1683 aa5.62□□□□□ -1.51
SSM4YIL030C VTH1P40438 1549 aa5.61□□□□□ -1.51
SSM4YIL030C VTH2P40890 1549 aa5.61□□□□□ -1.51
SSM4YIL030C YRF1-1P0CX20 1796 aa5.6□□□□□ -1.51
SSM4YIL030C YRF1-5P0CX21 1796 aa5.6□□□□□ -1.51
SSM4YIL030C YRF1-8P0CX22 1796 aa5.6□□□□□ -1.51
SSM4YIL030C CHC1P22137 1653 aaKnown RBP5.59□□□□□ -1.51
SSM4YIL030C YOR093CQ12275 1648 aa5.58□□□□□ -1.52
SSM4YIL030C ARO1P08566 1588 aaKnown RBP5.57□□□□□ -1.52
SSM4YIL030C NUP159P40477 1460 aa5.57□□□□□ -1.52
SSM4YIL030C YLR419WQ06698 1435 aaKnown RBP5.56□□□□□ -1.52
SSM4YIL030C TY3B-IQ7LHG5 1498 aaKnown RBP5.56□□□□□ -1.52
SSM4YIL030C STH1P32597 1359 aa5.55□□□□□ -1.52
SSM4YIL030C GDB1Q06625 1536 aa5.54□□□□□ -1.52
SSM4YIL030C CAT8P39113 1433 aa5.52□□□□□ -1.53
SSM4YIL030C DNF1P32660 1571 aa5.51□□□□□ -1.53
SSM4YIL030C HAP1P0CE41 1502 aa5.51□□□□□ -1.53
SSM4YIL030C GEA1P47102 1408 aaPredicted RBP5.49□□□□□ -1.53
SSM4YIL030C GEA2P39993 1459 aaKnown RBP5.49□□□□□ -1.53
SSM4YIL030C DOP1Q03921 1698 aa5.48□□□□□ -1.53
SSM4YIL030C NUP192P47054 1683 aa5.48□□□□□ -1.53
SSM4YIL030C VPS15P22219 1454 aa5.46□□□□□ -1.53
SSM4YIL030C TSC11P40061 1430 aa5.46□□□□□ -1.53
SSM4YIL030C SSM4P40318 1319 aa5.46□□□□□ -1.53
SSM4YIL030C PAN1P32521 1480 aa5.45□□□□□ -1.54
SSM4YIL030C DNF3Q12674 1656 aa5.44□□□□□ -1.54
SSM4YIL030C SRB8P25648 1427 aa5.42□□□□□ -1.54
SSM4YIL030C VMR1P38735 1592 aa5.42□□□□□ -1.54
SSM4YIL030C BUD3P25558 1636 aa5.39□□□□□ -1.55
SSM4YIL030C NUP188P52593 1655 aaKnown RBP5.39□□□□□ -1.55
SSM4YIL030C DNF2Q12675 1612 aa5.37□□□□□ -1.55
SSM4YIL030C IML1P47170 1584 aa5.36□□□□□ -1.55
SSM4YIL030C SNF2P22082 1703 aa5.36□□□□□ -1.55
SSM4YIL030C NSR1P27476 414 aaKnown RBP RIP-Chip data5.36□□□□□ -1.55not detected
SSM4YIL030C MET5P47169 1442 aa5.36□□□□□ -1.55
SSM4YIL030C SEC7P11075 2009 aaKnown RBP5.34□□□□□ -1.55
SSM4YIL030C IOC4Q04213 475 aa5.32□□□□□ -1.56
SSM4YIL030C APC1P53886 1748 aa5.31□□□□□ -1.56
SSM4YIL030C TY1B-NL2Q99337 1749 aaKnown RBP5.31□□□□□ -1.56
SSM4YIL030C YSP2Q06681 1438 aa5.29□□□□□ -1.56
SSM4YIL030C USO1P25386 1790 aa5.28□□□□□ -1.56
SSM4YIL030C MLP1Q02455 1875 aaKnown RBP5.25□□□□□ -1.57
SSM4YIL030C MMS1Q06211 1407 aa5.24□□□□□ -1.57
SSM4YIL030C TAF7Q05021 590 aa5.23□□□□□ -1.57
SSM4YIL030C TRM3Q07527 1436 aa5.22□□□□□ -1.57
SSM4YIL030C SEC3P33332 1336 aaKnown RBP5.21□□□□□ -1.58
SSM4YIL030C ENP1P38333 483 aaKnown RBP5.18□□□□□ -1.58
SSM4YIL030C LTE1P07866 1435 aa5.18□□□□□ -1.58
SSM4YIL030C NOP2P40991 618 aaKnown RBP5.18□□□□□ -1.58
SSM4YIL030C RRP5Q05022 1729 aaKnown RBP5.18□□□□□ -1.58
SSM4YIL030C TFA1P36100 482 aa5.17□□□□□ -1.58
SSM4YIL030C PDR11P40550 1411 aa5.16□□□□□ -1.58
SSM4YIL030C YRF1-2P40105 1681 aa5.14□□□□□ -1.59
SSM4YIL030C YIL177CP40434 1758 aa5.14□□□□□ -1.59
SSM4YIL030C YJL225CP40889 1758 aa5.14□□□□□ -1.59
SSM4YIL030C PRS1P32895 427 aaKnown RBP5.14□□□□□ -1.59
SSM4YIL030C RAV1P47104 1357 aa5.13□□□□□ -1.59
SSM4YIL030C BNI1P41832 1953 aa5.13□□□□□ -1.59
SSM4YIL030C MHP1P43638 1398 aa5.12□□□□□ -1.59
SSM4YIL030C YRF1-4O13559 1382 aa5.11□□□□□ -1.59
SSM4YIL030C YML133CQ03099 1374 aa5.11□□□□□ -1.59
SSM4YIL030C YLL067CQ07888 1374 aa5.11□□□□□ -1.59
SSM4YIL030C YLL066CQ99208 1374 aa5.11□□□□□ -1.59
SSM4YIL030C URB1P34241 1764 aaKnown RBP5.11□□□□□ -1.59
SSM4YIL030C DUR1,2P32528 1835 aaKnown RBP5.1□□□□□ -1.59
SSM4YIL030C NUP157P40064 1391 aaKnown RBP5.07□□□□□ -1.6
SSM4YIL030C BCK1Q01389 1478 aa5.07□□□□□ -1.6
SSM4YIL030C YIR014WP40570 242 aa5.06□□□□□ -1.6
SSM4YIL030C RTC1Q08281 1341 aa5.05□□□□□ -1.6
SSM4YIL030C TY4B-HP0C2J7 1802 aa5.03□□□□□ -1.6
SSM4YIL030C TY4B-JP47024 1803 aa5.02□□□□□ -1.61
SSM4YIL030C UTP10P42945 1769 aaKnown RBP5□□□□□ -1.61
SSM4YIL030C SPT7P35177 1332 aa4.98□□□□□ -1.61
SSM4YIL030C RPP0P05317 312 aaKnown RBP4.97□□□□□ -1.61
SSM4YIL030C ABP1P15891 592 aaKnown RBP4.97□□□□□ -1.61
SSM4YIL030C POL5P39985 1022 aaKnown RBP4.95□□□□□ -1.62
SSM4YIL030C FKS3Q04952 1785 aa4.94□□□□□ -1.62
SSM4YIL030C OPY1P38271 328 aa4.94□□□□□ -1.62
SSM4YIL030C DRS2P39524 1355 aa4.92□□□□□ -1.62
SSM4YIL030C SIR4P11978 1358 aa4.91□□□□□ -1.62
SSM4YIL030C IME2P32581 645 aa4.9□□□□□ -1.63
SSM4YIL030C EDE1P34216 1381 aa4.89□□□□□ -1.63
SSM4YIL030C CFT1Q06632 1357 aaKnown RBP4.87□□□□□ -1.63
SSM4YIL030C BNR1P40450 1375 aa4.85□□□□□ -1.63
SSM4YIL030C YRB30P53107 440 aaPredicted RBP4.84□□□□□ -1.63
SSM4YIL030C MET10P39692 1035 aa4.83□□□□□ -1.64
SSM4YIL030C BFR2Q06631 534 aaKnown RBP4.83□□□□□ -1.64
SSM4YIL030C AUS1Q08409 1394 aa4.83□□□□□ -1.64
SSM4YIL030C FAS2P19097 1887 aaKnown RBP4.82□□□□□ -1.64
SSM4YIL030C YRF1-3P0CX14 1859 aa4.82□□□□□ -1.64
SSM4YIL030C YRF1-7P0CX15 1859 aa4.82□□□□□ -1.64
SSM4YIL030C YRF1-6P53819 1859 aa4.82□□□□□ -1.64
SSM4YIL030C SAS10Q12136 610 aaPredicted RBP4.81□□□□□ -1.64
SSM4YIL030C NUP145P49687 1317 aa4.81□□□□□ -1.64
SSM4YIL030C PSK1P31374 1356 aa4.81□□□□□ -1.64
Retrieved 100 of 5,963 RNA–protein pairs in 63.7 ms