RNA–Protein interactions for RNA: YGR143W

SKN1, Transcript of Protein involved in sphingolipid biosynthesis, yeastyeast

Gene SKN1, Length 2,316 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SKN1YGR143W VTH1P40438 1549 aa8.08□□□□□ -1.12
SKN1YGR143W VTH2P40890 1549 aa8.08□□□□□ -1.12
SKN1YGR143W YRF1-1P0CX20 1796 aa8.08□□□□□ -1.12
SKN1YGR143W YRF1-5P0CX21 1796 aa8.08□□□□□ -1.12
SKN1YGR143W YRF1-8P0CX22 1796 aa8.08□□□□□ -1.12
SKN1YGR143W NTE1Q04958 1679 aa8.08□□□□□ -1.12
SKN1YGR143W TSC11P40061 1430 aa8.07□□□□□ -1.12
SKN1YGR143W NUP159P40477 1460 aa8.05□□□□□ -1.12
SKN1YGR143W LTE1P07866 1435 aa8.05□□□□□ -1.12
SKN1YGR143W NSR1P27476 414 aaKnown RBP RIP-Chip data8.04□□□□□ -1.12not detected
SKN1YGR143W RPO21P04050 1733 aaKnown RBP8.04□□□□□ -1.12
SKN1YGR143W MYO4P32492 1471 aa8.03□□□□□ -1.12
SKN1YGR143W YTA7P40340 1379 aa8.02□□□□□ -1.13
SKN1YGR143W BNI1P41832 1953 aa8.02□□□□□ -1.13
SKN1YGR143W TFA1P36100 482 aa8.01□□□□□ -1.13
SKN1YGR143W YPR148CQ06523 435 aa8□□□□□ -1.13
SKN1YGR143W SNQ2P32568 1501 aaKnown RBP7.99□□□□□ -1.13
SKN1YGR143W VPS15P22219 1454 aa7.99□□□□□ -1.13
SKN1YGR143W GEA2P39993 1459 aaKnown RBP7.99□□□□□ -1.13
SKN1YGR143W RPS0BP46654 252 aaKnown RBP7.97□□□□□ -1.13
SKN1YGR143W ITT1Q04638 464 aa7.95□□□□□ -1.14
SKN1YGR143W FAP1P53971 965 aa7.95□□□□□ -1.14
SKN1YGR143W SNT2P53127 1403 aa7.93□□□□□ -1.14
SKN1YGR143W DIP2Q12220 943 aaPredicted RBP7.91□□□□□ -1.14
SKN1YGR143W ULS1Q08562 1619 aa7.91□□□□□ -1.14
SKN1YGR143W KRI1P42846 591 aaKnown RBP7.9□□□□□ -1.14
SKN1YGR143W MLP2P40457 1679 aa7.9□□□□□ -1.14
SKN1YGR143W SPO14P36126 1683 aa7.89□□□□□ -1.15
SKN1YGR143W STH1P32597 1359 aa7.89□□□□□ -1.15
SKN1YGR143W YRB30P53107 440 aaPredicted RBP7.88□□□□□ -1.15
SKN1YGR143W DRS2P39524 1355 aa7.88□□□□□ -1.15
SKN1YGR143W PDR15Q04182 1529 aaKnown RBP7.87□□□□□ -1.15
SKN1YGR143W MMS1Q06211 1407 aa7.86□□□□□ -1.15
SKN1YGR143W SAS10Q12136 610 aaPredicted RBP7.85□□□□□ -1.15
SKN1YGR143W CWC22P53333 577 aaKnown RBP7.85□□□□□ -1.15
SKN1YGR143W NUP170P38181 1502 aa7.84□□□□□ -1.15
SKN1YGR143W PDR12Q02785 1511 aa7.84□□□□□ -1.16
SKN1YGR143W MET10P39692 1035 aa7.83□□□□□ -1.16
SKN1YGR143W RTT106P40161 455 aa7.82□□□□□ -1.16
SKN1YGR143W IRC20Q06554 1556 aa7.82□□□□□ -1.16
SKN1YGR143W GDB1Q06625 1536 aa7.81□□□□□ -1.16
SKN1YGR143W DOP1Q03921 1698 aa7.78□□□□□ -1.16
SKN1YGR143W DNF2Q12675 1612 aa7.77□□□□□ -1.17
SKN1YGR143W NUP157P40064 1391 aaKnown RBP7.77□□□□□ -1.17
SKN1YGR143W ABP1P15891 592 aaKnown RBP7.75□□□□□ -1.17
SKN1YGR143W MIF2P35201 549 aa7.75□□□□□ -1.17
SKN1YGR143W NAP1P25293 417 aaKnown RBP7.75□□□□□ -1.17
SKN1YGR143W IQG1Q12280 1495 aa7.75□□□□□ -1.17
SKN1YGR143W IFH1P39520 1085 aa7.74□□□□□ -1.17
SKN1YGR143W PDR10P51533 1564 aa7.74□□□□□ -1.17
SKN1YGR143W IOC4Q04213 475 aa7.74□□□□□ -1.17
SKN1YGR143W TY3B-GQ99315 1547 aa7.73□□□□□ -1.17
SKN1YGR143W YBT1P32386 1661 aa7.71□□□□□ -1.17
SKN1YGR143W GEA1P47102 1408 aaPredicted RBP7.71□□□□□ -1.18
SKN1YGR143W TRM3Q07527 1436 aa7.68□□□□□ -1.18
SKN1YGR143W BUD3P25558 1636 aa7.68□□□□□ -1.18
SKN1YGR143W ARO1P08566 1588 aaKnown RBP7.67□□□□□ -1.18
SKN1YGR143W CHC1P22137 1653 aaKnown RBP7.66□□□□□ -1.18
SKN1YGR143W CAT8P39113 1433 aa7.64□□□□□ -1.19
SKN1YGR143W TCB2P48231 1178 aa7.64□□□□□ -1.19
SKN1YGR143W DEF1P35732 738 aaKnown RBP7.64□□□□□ -1.19
SKN1YGR143W ENV11P53246 860 aa7.64□□□□□ -1.19
SKN1YGR143W PSH1Q12161 406 aa7.6□□□□□ -1.19
SKN1YGR143W YSP2Q06681 1438 aa7.6□□□□□ -1.19
SKN1YGR143W YOR093CQ12275 1648 aa7.59□□□□□ -1.19
SKN1YGR143W MNN4P36044 1178 aa7.59□□□□□ -1.19
SKN1YGR143W SEC7P11075 2009 aaKnown RBP7.59□□□□□ -1.19
SKN1YGR143W CKB1P43639 278 aa7.58□□□□□ -1.2
SKN1YGR143W AIM44Q99299 758 aa7.58□□□□□ -1.2
SKN1YGR143W LEO1P38439 464 aa7.56□□□□□ -1.2
SKN1YGR143W NUG1P40010 520 aaKnown RBP7.55□□□□□ -1.2
SKN1YGR143W YFR006WP43590 535 aa7.54□□□□□ -1.2
SKN1YGR143W BNR1P40450 1375 aa7.53□□□□□ -1.2
SKN1YGR143W DNF3Q12674 1656 aa7.52□□□□□ -1.21
SKN1YGR143W PRY3P47033 881 aa7.51□□□□□ -1.21
SKN1YGR143W SPT7P35177 1332 aa7.5□□□□□ -1.21
SKN1YGR143W NOP53Q12080 455 aaKnown RBP7.5□□□□□ -1.21
SKN1YGR143W RLP24Q07915 199 aaKnown RBP7.49□□□□□ -1.21
SKN1YGR143W SRB8P25648 1427 aa7.49□□□□□ -1.21
SKN1YGR143W RLF2Q12495 606 aa7.46□□□□□ -1.21
SKN1YGR143W SPT2P06843 333 aaPredicted RBP7.45□□□□□ -1.22
SKN1YGR143W SPT21P35209 758 aa7.45□□□□□ -1.22
SKN1YGR143W YAP3P38749 330 aa7.44□□□□□ -1.22
SKN1YGR143W YGR130CP53278 816 aa7.44□□□□□ -1.22
SKN1YGR143W FPR3P38911 411 aaKnown RBP7.43□□□□□ -1.22
SKN1YGR143W SNU71P53207 620 aaKnown RBP7.43□□□□□ -1.22
SKN1YGR143W QCR6P00127 147 aa7.42□□□□□ -1.22
SKN1YGR143W SEC3P33332 1336 aaKnown RBP7.4□□□□□ -1.22
SKN1YGR143W VMR1P38735 1592 aa7.4□□□□□ -1.22
SKN1YGR143W RNA1P11745 407 aaKnown RBP7.4□□□□□ -1.23
SKN1YGR143W FPR4Q06205 392 aaPredicted RBP7.4□□□□□ -1.23
SKN1YGR143W IKI3Q06706 1349 aaKnown RBP7.39□□□□□ -1.23
SKN1YGR143W NUP188P52593 1655 aaKnown RBP7.39□□□□□ -1.23
SKN1YGR143W BUD21Q08492 214 aaPredicted RBP7.39□□□□□ -1.23
SKN1YGR143W SSM4P40318 1319 aa7.38□□□□□ -1.23
SKN1YGR143W CLC1P17891 233 aa7.37□□□□□ -1.23
SKN1YGR143W USO1P25386 1790 aa7.36□□□□□ -1.23
SKN1YGR143W IML1P47170 1584 aa7.36□□□□□ -1.23
SKN1YGR143W TOP1P04786 769 aa7.36□□□□□ -1.23
SKN1YGR143W ENP1P38333 483 aaKnown RBP7.35□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 25.1 ms