RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W CHL1P22516 861 aaPredicted RBP9.62□□□□□ -0.87
UPF3YGR072W DCW1P36091 449 aa9.62□□□□□ -0.87
UPF3YGR072W YEL023CP39992 682 aa9.59□□□□□ -0.87
UPF3YGR072W PTC4P38089 393 aa9.58□□□□□ -0.88
UPF3YGR072W PRE3P38624 215 aa9.58□□□□□ -0.88
UPF3YGR072W YDR344CQ05510 147 aa9.47□□□□□ -0.89
UPF3YGR072W PML39Q03760 334 aa9.43□□□□□ -0.9
UPF3YGR072W VRP1P37370 817 aa9.42□□□□□ -0.9
UPF3YGR072W GRE2Q12068 342 aaKnown RBP9.41□□□□□ -0.9
UPF3YGR072W XDJ1P39102 459 aa9.38□□□□□ -0.91
UPF3YGR072W ELP4Q02884 456 aaKnown RBP9.36□□□□□ -0.91
UPF3YGR072W MIF2P35201 549 aa9.34□□□□□ -0.91
UPF3YGR072W ATH1P48016 1211 aa9.31□□□□□ -0.92
UPF3YGR072W GUT1P32190 709 aa9.3□□□□□ -0.92
UPF3YGR072W PTC3P34221 468 aaKnown RBP9.3□□□□□ -0.92
UPF3YGR072W EDS1P38073 919 aa9.3□□□□□ -0.92
UPF3YGR072W MID1P41821 548 aa9.29□□□□□ -0.92
UPF3YGR072W MAK11P20484 414 aaKnown RBP9.28□□□□□ -0.92
UPF3YGR072W NST1P53935 1240 aa9.28□□□□□ -0.92
UPF3YGR072W ARH1P48360 493 aa9.27□□□□□ -0.93
UPF3YGR072W RAM2P29703 316 aa9.26□□□□□ -0.93
UPF3YGR072W DPS1P04802 557 aaKnown RBP9.23□□□□□ -0.93
UPF3YGR072W SOL3P38858 249 aa9.22□□□□□ -0.93
UPF3YGR072W COQ8P27697 501 aa9.17□□□□□ -0.94
UPF3YGR072W MPH3P0CE00 602 aa9.16□□□□□ -0.94
UPF3YGR072W SPT23P35210 1082 aa9.16□□□□□ -0.94
UPF3YGR072W PEX29Q03370 554 aa9.16□□□□□ -0.94
UPF3YGR072W AI4P03878 556 aa9.13□□□□□ -0.95
UPF3YGR072W ILV3P39522 585 aaKnown RBP9.12□□□□□ -0.95
UPF3YGR072W HAP5Q02516 242 aa9.11□□□□□ -0.95
UPF3YGR072W BNI4P53858 892 aa9.05□□□□□ -0.96
UPF3YGR072W SRC1Q03707 834 aa9.04□□□□□ -0.96
UPF3YGR072W PTC2P39966 464 aaKnown RBP9.02□□□□□ -0.97
UPF3YGR072W YML082WQ04533 649 aaKnown RBP9.02□□□□□ -0.97
UPF3YGR072W MPC54Q08550 464 aa9.02□□□□□ -0.97
UPF3YGR072W YGR273CP53329 174 aa9.01□□□□□ -0.97
UPF3YGR072W NMA111P53920 997 aa8.96□□□□□ -0.98
UPF3YGR072W NOP53Q12080 455 aaKnown RBP8.94□□□□□ -0.98
UPF3YGR072W SLI15P38283 698 aa8.93□□□□□ -0.98
UPF3YGR072W DPL1Q05567 589 aa8.89□□□□□ -0.99
UPF3YGR072W RGA2Q06407 1009 aa8.88□□□□□ -0.99
UPF3YGR072W RAS1P01119 309 aa8.87□□□□□ -0.99
UPF3YGR072W YPR015CQ12531 247 aa8.87□□□□□ -0.99
UPF3YGR072W RAM1P22007 431 aa8.82□□□□□ -1
UPF3YGR072W RGA1P39083 1007 aa8.8□□□□□ -1
UPF3YGR072W KEX1P09620 729 aa8.78□□□□□ -1
UPF3YGR072W ISU2Q12056 156 aa8.78□□□□□ -1
UPF3YGR072W CDC73Q06697 393 aa8.76□□□□□ -1.01
UPF3YGR072W GYP1Q08484 637 aa8.73□□□□□ -1.01
UPF3YGR072W PDR1P12383 1068 aa8.7□□□□□ -1.02
UPF3YGR072W AMS1P22855 1083 aa8.7□□□□□ -1.02
UPF3YGR072W YLR326WQ06170 240 aaKnown RBP8.67□□□□□ -1.02
UPF3YGR072W SDH2P21801 266 aa8.66□□□□□ -1.02
UPF3YGR072W UBP14P38237 781 aaKnown RBP8.66□□□□□ -1.02
UPF3YGR072W TRK1P12685 1235 aa8.65□□□□□ -1.02
UPF3YGR072W VHR2P40041 505 aa8.63□□□□□ -1.03
UPF3YGR072W PCS60P38137 543 aaKnown RBP RIP-Chip data8.61□□□□□ -1.03not detected
UPF3YGR072W SAS4Q04003 481 aa8.61□□□□□ -1.03
UPF3YGR072W SET1P38827 1080 aaKnown RBP8.59□□□□□ -1.03
UPF3YGR072W RAD54P32863 898 aa8.56□□□□□ -1.04
UPF3YGR072W YEL077CQ3E7X8 1277 aa8.53□□□□□ -1.04
UPF3YGR072W BUD20Q08004 166 aaPredicted RBP8.5□□□□□ -1.05
UPF3YGR072W RPP1BP10622 106 aaKnown RBP8.49□□□□□ -1.05
UPF3YGR072W MRF1P30775 413 aaPredicted RBP8.47□□□□□ -1.05
UPF3YGR072W YDR090CQ03193 310 aa8.46□□□□□ -1.06
UPF3YGR072W YRR1Q12172 810 aa8.46□□□□□ -1.06
UPF3YGR072W PRT1P06103 763 aaKnown RBP8.45□□□□□ -1.06
UPF3YGR072W STR2P47164 639 aa8.44□□□□□ -1.06
UPF3YGR072W ISM1P48526 1002 aa8.42□□□□□ -1.06
UPF3YGR072W PEX21P50091 288 aa8.41□□□□□ -1.06
UPF3YGR072W GAP1P19145 602 aaPredicted RBP8.4□□□□□ -1.06
UPF3YGR072W YPL062WQ02781 134 aa8.4□□□□□ -1.06
UPF3YGR072W KIC1P38692 1080 aa8.38□□□□□ -1.07
UPF3YGR072W ERG12P07277 443 aa8.37□□□□□ -1.07
UPF3YGR072W AIR1P40507 360 aaKnown RBP8.37□□□□□ -1.07
UPF3YGR072W NUD1P32336 851 aa8.36□□□□□ -1.07
UPF3YGR072W CST6P40535 587 aa8.36□□□□□ -1.07
UPF3YGR072W TUM1Q08686 304 aaKnown RBP8.36□□□□□ -1.07
UPF3YGR072W CLA4P48562 842 aa8.35□□□□□ -1.07
UPF3YGR072W TFB4Q12004 338 aa8.35□□□□□ -1.07
UPF3YGR072W CSC1Q06538 782 aa8.34□□□□□ -1.07
UPF3YGR072W BRE2P43132 505 aa8.33□□□□□ -1.08
UPF3YGR072W TY1A-DR4O74302 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-HP0C2I4 478 aaKnown RBP8.29□□□□□ -1.08
UPF3YGR072W TY1A-AP0CX57 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-PR1P0CX58 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-ORP0CX59 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-PR2P0CX60 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-DR5P0CX65 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-ER2P0CX66 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-GR3P0CX67 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-LR1P0CX68 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-MR2P0CX69 440 aa8.29□□□□□ -1.08
UPF3YGR072W NPL4P33755 580 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-JR2P47099 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-DR1Q03856 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-ML1Q04706 440 aaKnown RBP8.29□□□□□ -1.08
UPF3YGR072W TY1A-BRQ12217 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-NL2Q12470 440 aa8.29□□□□□ -1.08
UPF3YGR072W TY1A-GR2Q12485 440 aa8.29□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms