RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C YEL023CP39992 682 aa9.24□□□□□ -0.93
RTR1YER139C PTC4P38089 393 aa9.21□□□□□ -0.94
RTR1YER139C CHL1P22516 861 aaPredicted RBP9.18□□□□□ -0.94
RTR1YER139C BCK2P33306 851 aa9.16□□□□□ -0.94
RTR1YER139C PRE3P38624 215 aa9.16□□□□□ -0.94
RTR1YER139C GRE2Q12068 342 aaKnown RBP9.13□□□□□ -0.95
RTR1YER139C MIF2P35201 549 aa9.09□□□□□ -0.95
RTR1YER139C MAK11P20484 414 aaKnown RBP9.08□□□□□ -0.96
RTR1YER139C RAM2P29703 316 aa9.07□□□□□ -0.96
RTR1YER139C YDR344CQ05510 147 aa9.07□□□□□ -0.96
RTR1YER139C EDS1P38073 919 aa9.06□□□□□ -0.96
RTR1YER139C PML39Q03760 334 aa9.05□□□□□ -0.96
RTR1YER139C PTC3P34221 468 aaKnown RBP9.04□□□□□ -0.96
RTR1YER139C ATH1P48016 1211 aa9.04□□□□□ -0.96
RTR1YER139C GUT1P32190 709 aa9.01□□□□□ -0.97
RTR1YER139C NST1P53935 1240 aa8.97□□□□□ -0.97
RTR1YER139C ELP4Q02884 456 aaKnown RBP8.97□□□□□ -0.97
RTR1YER139C COQ8P27697 501 aa8.96□□□□□ -0.98
RTR1YER139C VRP1P37370 817 aa8.96□□□□□ -0.98
RTR1YER139C MID1P41821 548 aa8.93□□□□□ -0.98
RTR1YER139C SOL3P38858 249 aa8.92□□□□□ -0.98
RTR1YER139C XDJ1P39102 459 aa8.92□□□□□ -0.98
RTR1YER139C ARH1P48360 493 aa8.91□□□□□ -0.98
RTR1YER139C AI4P03878 556 aa8.86□□□□□ -0.99
RTR1YER139C MPH3P0CE00 602 aa8.86□□□□□ -0.99
RTR1YER139C ILV3P39522 585 aaKnown RBP8.85□□□□□ -0.99
RTR1YER139C PEX29Q03370 554 aa8.85□□□□□ -0.99
RTR1YER139C SPT23P35210 1082 aa8.8□□□□□ -1
RTR1YER139C DPS1P04802 557 aaKnown RBP8.78□□□□□ -1
RTR1YER139C YGR273CP53329 174 aa8.77□□□□□ -1.01
RTR1YER139C HAP5Q02516 242 aa8.77□□□□□ -1.01
RTR1YER139C NOP53Q12080 455 aaKnown RBP8.75□□□□□ -1.01
RTR1YER139C MPC54Q08550 464 aa8.73□□□□□ -1.01
RTR1YER139C BNI4P53858 892 aa8.72□□□□□ -1.01
RTR1YER139C PTC2P39966 464 aaKnown RBP8.68□□□□□ -1.02
RTR1YER139C YML082WQ04533 649 aaKnown RBP8.67□□□□□ -1.02
RTR1YER139C SLI15P38283 698 aa8.66□□□□□ -1.02
RTR1YER139C NMA111P53920 997 aa8.63□□□□□ -1.03
RTR1YER139C DPL1Q05567 589 aa8.61□□□□□ -1.03
RTR1YER139C SRC1Q03707 834 aa8.6□□□□□ -1.03
RTR1YER139C KEX1P09620 729 aa8.57□□□□□ -1.04
RTR1YER139C YPR015CQ12531 247 aa8.55□□□□□ -1.04
RTR1YER139C RAM1P22007 431 aa8.5□□□□□ -1.05
RTR1YER139C CDC73Q06697 393 aa8.49□□□□□ -1.05
RTR1YER139C ISU2Q12056 156 aa8.49□□□□□ -1.05
RTR1YER139C SET1P38827 1080 aaKnown RBP8.48□□□□□ -1.05
RTR1YER139C YLR326WQ06170 240 aaKnown RBP8.48□□□□□ -1.05
RTR1YER139C RAS1P01119 309 aa8.46□□□□□ -1.06
RTR1YER139C VHR2P40041 505 aa8.45□□□□□ -1.06
RTR1YER139C UBP14P38237 781 aaKnown RBP8.44□□□□□ -1.06
RTR1YER139C PDR1P12383 1068 aa8.41□□□□□ -1.06
RTR1YER139C PCS60P38137 543 aaKnown RBP RIP-Chip data8.41□□□□□ -1.06not detected
RTR1YER139C GYP1Q08484 637 aa8.41□□□□□ -1.06
RTR1YER139C RAD54P32863 898 aa8.39□□□□□ -1.07
RTR1YER139C AMS1P22855 1083 aa8.36□□□□□ -1.07
RTR1YER139C SDH2P21801 266 aa8.34□□□□□ -1.07
RTR1YER139C RPP1BP10622 106 aaKnown RBP8.31□□□□□ -1.08
RTR1YER139C SAS4Q04003 481 aa8.31□□□□□ -1.08
RTR1YER139C TRK1P12685 1235 aa8.28□□□□□ -1.08
RTR1YER139C YDR090CQ03193 310 aa8.28□□□□□ -1.08
RTR1YER139C RGA1P39083 1007 aa8.26□□□□□ -1.09
RTR1YER139C RGA2Q06407 1009 aa8.26□□□□□ -1.09
RTR1YER139C KIC1P38692 1080 aa8.23□□□□□ -1.09
RTR1YER139C YRR1Q12172 810 aa8.23□□□□□ -1.09
RTR1YER139C YEL077CQ3E7X8 1277 aa8.23□□□□□ -1.09
RTR1YER139C IFH1P39520 1085 aa8.22□□□□□ -1.09
RTR1YER139C BUD20Q08004 166 aaPredicted RBP8.22□□□□□ -1.09
RTR1YER139C PEX21P50091 288 aa8.21□□□□□ -1.1
RTR1YER139C GAP1P19145 602 aaPredicted RBP8.2□□□□□ -1.1
RTR1YER139C STR2P47164 639 aa8.2□□□□□ -1.1
RTR1YER139C PRT1P06103 763 aaKnown RBP8.18□□□□□ -1.1
RTR1YER139C MRF1P30775 413 aaPredicted RBP8.18□□□□□ -1.1
RTR1YER139C ISM1P48526 1002 aa8.16□□□□□ -1.1
RTR1YER139C YPR148CQ06523 435 aa8.16□□□□□ -1.1
RTR1YER139C CSC1Q06538 782 aa8.16□□□□□ -1.1
RTR1YER139C TFB4Q12004 338 aa8.16□□□□□ -1.1
RTR1YER139C NUD1P32336 851 aa8.15□□□□□ -1.1
RTR1YER139C REF2P42073 533 aaPredicted RBP8.15□□□□□ -1.1
RTR1YER139C TUM1Q08686 304 aaKnown RBP8.15□□□□□ -1.1
RTR1YER139C ORC6P38826 435 aa8.12□□□□□ -1.11
RTR1YER139C ERG12P07277 443 aa8.09□□□□□ -1.11
RTR1YER139C CST6P40535 587 aa8.08□□□□□ -1.12
RTR1YER139C TY1A-DR4O74302 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-HP0C2I4 478 aaKnown RBP8.07□□□□□ -1.12
RTR1YER139C TY1A-AP0CX57 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-PR1P0CX58 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-ORP0CX59 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-PR2P0CX60 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-DR5P0CX65 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-ER2P0CX66 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-GR3P0CX67 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-LR1P0CX68 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-MR2P0CX69 440 aa8.07□□□□□ -1.12
RTR1YER139C NPL4P33755 580 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-JR2P47099 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-DR1Q03856 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-ML1Q04706 440 aaKnown RBP8.07□□□□□ -1.12
RTR1YER139C TY1A-BRQ12217 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-NL2Q12470 440 aa8.07□□□□□ -1.12
RTR1YER139C TY1A-GR2Q12485 440 aa8.07□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 45.3 ms