RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 HSP90AA2PQ14568 343 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-220ENST00000641603 FAM50AQ14320 339 aaKnown RBP6.09□□□□□ -1.44
SCN1A-220ENST00000641603 IPO9Q96P70 1041 aaKnown RBP6.08□□□□□ -1.44
SCN1A-220ENST00000641603 CHMP4BQ9H444 224 aaKnown RBP6.08□□□□□ -1.44
SCN1A-220ENST00000641603 PRKCSHP14314 528 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-220ENST00000641603 MSNP26038 577 aaKnown RBP6.08□□□□□ -1.44
SCN1A-220ENST00000641603 GOLGA3Q08378 1498 aa6.08□□□□□ -1.44
SCN1A-220ENST00000641603 TNIKQ9UKE5 1360 aa6.08□□□□□ -1.44
SCN1A-220ENST00000641603 GOLGA6L6A8MZA4 724 aa6.07□□□□□ -1.44
SCN1A-220ENST00000641603 NRDCO43847 1150 aa6.07□□□□□ -1.44
SCN1A-220ENST00000641603 CNGB1Q14028 1251 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-220ENST00000641603 MRS2Q9HD23 443 aa6.07□□□□□ -1.44
SCN1A-220ENST00000641603 MS4A1P11836 297 aa6.06□□□□□ -1.44
SCN1A-220ENST00000641603 DDX10Q13206 875 aaKnown RBP6.05□□□□□ -1.44
SCN1A-220ENST00000641603 TMC1Q8TDI8 760 aa6.05□□□□□ -1.44
SCN1A-220ENST00000641603 CLIP1P30622 1438 aa6.05□□□□□ -1.44
SCN1A-220ENST00000641603 PKNOX2Q96KN3 472 aa6.05□□□□□ -1.44
SCN1A-220ENST00000641603 GOLGA6L3A6NEY3 463 aa6.05□□□□□ -1.44
SCN1A-220ENST00000641603 EIF4G2P78344 907 aaKnown RBP eCLIP6.05□□□□□ -1.44
SCN1A-220ENST00000641603 TRIM52Q96A61 297 aa6.05□□□□□ -1.44
SCN1A-220ENST00000641603 PTMAP06454 111 aaKnown RBP6.04□□□□□ -1.44
SCN1A-220ENST00000641603 CEP162Q5TB80 1403 aa6.04□□□□□ -1.44
SCN1A-220ENST00000641603 A0A0U1RQG5 324 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-220ENST00000641603 MYO15BQ96JP2 1530 aa6.04□□□□□ -1.44
SCN1A-220ENST00000641603 ISY1Q9ULR0 285 aaKnown RBP6.03□□□□□ -1.44
SCN1A-220ENST00000641603 CALRP27797 417 aaKnown RBP6.03□□□□□ -1.44
SCN1A-220ENST00000641603 TAF3Q5VWG9 929 aa6.03□□□□□ -1.44
SCN1A-220ENST00000641603 CEP164Q9UPV0 1460 aa6.02□□□□□ -1.45
SCN1A-220ENST00000641603 GBP4Q96PP9 640 aa6.02□□□□□ -1.45
SCN1A-220ENST00000641603 WRNQ14191 1432 aaPredicted RBP eCLIP6.02□□□□□ -1.45
SCN1A-220ENST00000641603 DNTTIP2Q5QJE6 756 aaKnown RBP6.02□□□□□ -1.45
SCN1A-220ENST00000641603 TPM2P07951 284 aa6.02□□□□□ -1.45
SCN1A-220ENST00000641603 GSE1Q14687 1217 aa6.02□□□□□ -1.45
SCN1A-220ENST00000641603 SKOR2Q2VWA4 1001 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-220ENST00000641603 UBE2Q2Q8WVN8 375 aa6.01□□□□□ -1.45
SCN1A-220ENST00000641603 MYH16Q9H6N6 1097 aa6.01□□□□□ -1.45
SCN1A-220ENST00000641603 KIAA2012Q0VF49 1180 aa6.01□□□□□ -1.45
SCN1A-220ENST00000641603 CASC1Q6TDU7 716 aa6.01□□□□□ -1.45
SCN1A-220ENST00000641603 CSPP1Q1MSJ5 1256 aa6.01□□□□□ -1.45
SCN1A-220ENST00000641603 RRP9O43818 475 aaKnown RBP6.01□□□□□ -1.45
SCN1A-220ENST00000641603 SYAP1Q96A49 352 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-220ENST00000641603 PHLDB1Q86UU1 1377 aa6.01□□□□□ -1.45
SCN1A-220ENST00000641603 RSF1Q96T23 1441 aaPredicted RBP6□□□□□ -1.45
SCN1A-220ENST00000641603 DDX11L8A8MPP1 907 aa6□□□□□ -1.45
SCN1A-220ENST00000641603 FAM9BQ8IZU0 186 aa6□□□□□ -1.45
SCN1A-220ENST00000641603 FAM43AQ8N2R8 423 aa6□□□□□ -1.45
SCN1A-220ENST00000641603 VSIG10Q8N0Z9 540 aa5.99□□□□□ -1.45
SCN1A-220ENST00000641603 TNNT3P45378 269 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-220ENST00000641603 PDE3BQ13370 1112 aa5.99□□□□□ -1.45
SCN1A-220ENST00000641603 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-220ENST00000641603 WDR43Q15061 677 aaKnown RBP eCLIP5.99□□□□□ -1.45
SCN1A-220ENST00000641603 HSCBQ8IWL3 235 aa5.98□□□□□ -1.45
SCN1A-220ENST00000641603 CDCA8Q53HL2 280 aa5.98□□□□□ -1.45
SCN1A-220ENST00000641603 TSPYL1Q9H0U9 437 aa5.97□□□□□ -1.45
SCN1A-220ENST00000641603 RTN4Q9NQC3 1192 aaKnown RBP5.96□□□□□ -1.45
SCN1A-220ENST00000641603 ROCK2O75116 1388 aaKnown RBP5.96□□□□□ -1.45
SCN1A-220ENST00000641603 PHF14O94880 888 aa5.96□□□□□ -1.45
SCN1A-220ENST00000641603 AAMPQ13685 434 aa5.96□□□□□ -1.45
SCN1A-220ENST00000641603 ZRSR1Q15695 479 aaKnown RBP5.96□□□□□ -1.45
SCN1A-220ENST00000641603 PODXL2Q9NZ53 605 aa5.96□□□□□ -1.46
SCN1A-220ENST00000641603 RB1CC1Q8TDY2 1594 aa5.96□□□□□ -1.46
SCN1A-220ENST00000641603 CCDC66A2RUB6 948 aa5.96□□□□□ -1.46
SCN1A-220ENST00000641603 GOLGA6L1Q8N7Z2 621 aa5.95□□□□□ -1.46
SCN1A-220ENST00000641603 NGEFQ8N5V2 710 aa5.94□□□□□ -1.46
SCN1A-220ENST00000641603 SETQ01105 290 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-220ENST00000641603 VPS8Q8N3P4 1428 aa5.94□□□□□ -1.46
SCN1A-220ENST00000641603 MAPK8IP3Q9UPT6 1336 aa5.93□□□□□ -1.46
SCN1A-220ENST00000641603 HTATSF1O43719 755 aaKnown RBP5.92□□□□□ -1.46
SCN1A-220ENST00000641603 NOM1Q5C9Z4 860 aaKnown RBP5.92□□□□□ -1.46
SCN1A-220ENST00000641603 FHAD1B1AJZ9 1412 aa5.92□□□□□ -1.46
SCN1A-220ENST00000641603 CCNB3Q8WWL7 1395 aa5.92□□□□□ -1.46
SCN1A-220ENST00000641603 TPM3P06753 285 aa5.92□□□□□ -1.46
SCN1A-220ENST00000641603 HSP90AB1P08238 724 aaKnown RBP5.92□□□□□ -1.46
SCN1A-220ENST00000641603 HAP1P54257 671 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-220ENST00000641603 EIF3AQ14152 1382 aaKnown RBP5.92□□□□□ -1.46
SCN1A-220ENST00000641603 ZBED9Q6R2W3 1325 aa5.91□□□□□ -1.46
SCN1A-220ENST00000641603 HMGN5P82970 282 aaKnown RBP5.91□□□□□ -1.46
SCN1A-220ENST00000641603 GPS2Q13227 327 aa5.91□□□□□ -1.46
SCN1A-220ENST00000641603 NUDCQ9Y266 331 aa5.91□□□□□ -1.46
SCN1A-220ENST00000641603 MRE11P49959 708 aa5.9□□□□□ -1.46
SCN1A-220ENST00000641603 KTN1Q86UP2 1357 aaKnown RBP5.9□□□□□ -1.46
SCN1A-220ENST00000641603 DHX8Q14562 1220 aaKnown RBP5.9□□□□□ -1.46
SCN1A-220ENST00000641603 RALBP1Q15311 655 aa5.9□□□□□ -1.47
SCN1A-220ENST00000641603 TEX35Q5T0J7 233 aa5.9□□□□□ -1.47
SCN1A-220ENST00000641603 CWC15Q9P013 229 aaKnown RBP5.9□□□□□ -1.47
SCN1A-220ENST00000641603 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-220ENST00000641603 SETD5Q9C0A6 1442 aa5.89□□□□□ -1.47
SCN1A-220ENST00000641603 CAVIN1Q6NZI2 390 aaKnown RBP5.89□□□□□ -1.47
SCN1A-220ENST00000641603 CFAP53Q96M91 514 aa5.89□□□□□ -1.47
SCN1A-220ENST00000641603 CENPQQ7L2Z9 268 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-220ENST00000641603 FAM161AQ3B820 660 aa5.89□□□□□ -1.47
SCN1A-220ENST00000641603 PMFBP1Q8TBY8 1022 aa5.89□□□□□ -1.47
SCN1A-220ENST00000641603 MCCP23508 829 aa5.89□□□□□ -1.47
SCN1A-220ENST00000641603 PDCL2Q8N4E4 241 aa5.88□□□□□ -1.47
SCN1A-220ENST00000641603 ARXQ96QS3 562 aa5.88□□□□□ -1.47
SCN1A-220ENST00000641603 IRX6P78412 446 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-220ENST00000641603 BAZ1BQ9UIG0 1483 aaKnown RBP5.88□□□□□ -1.47
SCN1A-220ENST00000641603 MTUS2Q5JR59 1369 aa5.88□□□□□ -1.47
SCN1A-220ENST00000641603 DIAPH3Q9NSV4 1193 aa5.88□□□□□ -1.47
SCN1A-220ENST00000641603 B4GALNT3Q6L9W6 998 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms