RNA–Protein interactions for RNA: ENST00000622143.1

SRSF4-207, Transcript of serine and arginine rich splicing factor 4, humanhuman

TSL 2

Gene SRSF4, Length 614 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF4-207ENST00000622143 PCDH10Q9P2E7 1040 aa10.58□□□□□ -0.72
SRSF4-207ENST00000622143 MNX1P50219 401 aaPredicted RBP10.55□□□□□ -0.72
SRSF4-207ENST00000622143 EIF4G1Q04637 1599 aaKnown RBP10.49□□□□□ -0.73
SRSF4-207ENST00000622143 LCE2DQ5TA82 110 aaPredicted RBP10.47□□□□□ -0.73
SRSF4-207ENST00000622143 SCRIBQ14160 1630 aa10.46□□□□□ -0.74
SRSF4-207ENST00000622143 CD44P16070 742 aaKnown RBP10.43□□□□□ -0.74
SRSF4-207ENST00000622143 DCBLD2Q96PD2 775 aa10.43□□□□□ -0.74
SRSF4-207ENST00000622143 MYO15BQ96JP2 1530 aa10.41□□□□□ -0.74
SRSF4-207ENST00000622143 MIER1Q8N108 512 aa10.4□□□□□ -0.74
SRSF4-207ENST00000622143 FBXO3Q9UK99 471 aa10.39□□□□□ -0.75
SRSF4-207ENST00000622143 SHROOM4Q9ULL8 1493 aa10.38□□□□□ -0.75
SRSF4-207ENST00000622143 NPM1P06748 294 aaKnown RBP eCLIP10.38□□□□□ -0.75
SRSF4-207ENST00000622143 PLCD3Q8N3E9 789 aa10.35□□□□□ -0.75
SRSF4-207ENST00000622143 ZNF579Q8NAF0 562 aaKnown RBP10.33□□□□□ -0.76
SRSF4-207ENST00000622143 VASPP50552 380 aaPredicted RBP10.32□□□□□ -0.76
SRSF4-207ENST00000622143 PLEKHG5O94827 1062 aa10.31□□□□□ -0.76
SRSF4-207ENST00000622143 ZRANB1Q9UGI0 708 aa10.31□□□□□ -0.76
SRSF4-207ENST00000622143 RASEFQ8IZ41 740 aa10.27□□□□□ -0.77
SRSF4-207ENST00000622143 FAM163AQ96GL9 167 aaPredicted RBP10.27□□□□□ -0.77
SRSF4-207ENST00000622143 ZCCHC6Q5VYS8 1495 aaKnown RBP10.26□□□□□ -0.77
SRSF4-207ENST00000622143 POTEJP0CG39 1038 aa10.26□□□□□ -0.77
SRSF4-207ENST00000622143 NUBP1P53384 320 aa10.26□□□□□ -0.77
SRSF4-207ENST00000622143 ZBTB47Q9UFB7 747 aaPredicted RBP10.25□□□□□ -0.77
SRSF4-207ENST00000622143 PAK3O75914 559 aaPredicted RBP10.24□□□□□ -0.77
SRSF4-207ENST00000622143 TRIM41Q8WV44 630 aa10.24□□□□□ -0.77
SRSF4-207ENST00000622143 PHF12Q96QT6 1004 aa10.24□□□□□ -0.77
SRSF4-207ENST00000622143 CUX2O14529 1486 aa10.23□□□□□ -0.77
SRSF4-207ENST00000622143 ERCC6Q03468 1493 aa10.23□□□□□ -0.77
SRSF4-207ENST00000622143 CLCN6P51797 869 aa10.23□□□□□ -0.77
SRSF4-207ENST00000622143 CCDC61Q9Y6R9 512 aa10.22□□□□□ -0.77
SRSF4-207ENST00000622143 TSPYL2Q9H2G4 693 aaPredicted RBP10.21□□□□□ -0.77
SRSF4-207ENST00000622143 GALR2O43603 387 aaPredicted RBP10.19□□□□□ -0.78
SRSF4-207ENST00000622143 DCAF1Q9Y4B6 1507 aa10.18□□□□□ -0.78
SRSF4-207ENST00000622143 IFNLR1Q8IU57 520 aaPredicted RBP10.18□□□□□ -0.78
SRSF4-207ENST00000622143 PELP1Q8IZL8 1130 aaKnown RBP10.17□□□□□ -0.78
SRSF4-207ENST00000622143 CDAN1Q8IWY9 1227 aa10.16□□□□□ -0.78
SRSF4-207ENST00000622143 KIF12Q96FN5 646 aa10.13□□□□□ -0.79
SRSF4-207ENST00000622143 KLHL34Q8N239 644 aa10.12□□□□□ -0.79
SRSF4-207ENST00000622143 MS4A3Q96HJ5 214 aa10.11□□□□□ -0.79
SRSF4-207ENST00000622143 FAM212AQ96EL1 285 aa10.1□□□□□ -0.79
SRSF4-207ENST00000622143 NESP48681 1621 aa10.08□□□□□ -0.8
SRSF4-207ENST00000622143 MAP3K13O43283 966 aa10.07□□□□□ -0.8
SRSF4-207ENST00000622143 MMRN1Q13201 1228 aa10.06□□□□□ -0.8
SRSF4-207ENST00000622143 AMER1Q5JTC6 1135 aaPredicted RBP10.05□□□□□ -0.8
SRSF4-207ENST00000622143 RTN4Q9NQC3 1192 aaKnown RBP10.05□□□□□ -0.8
SRSF4-207ENST00000622143 SPOCK2Q92563 424 aa10.04□□□□□ -0.8
SRSF4-207ENST00000622143 DCAF8Q5TAQ9 597 aa10.03□□□□□ -0.8
SRSF4-207ENST00000622143 TRPC6Q9Y210 931 aa10.02□□□□□ -0.81
SRSF4-207ENST00000622143 SGIP1Q9BQI5 828 aa10.01□□□□□ -0.81
SRSF4-207ENST00000622143 ASTLQ6HA08 431 aaPredicted RBP10□□□□□ -0.81
SRSF4-207ENST00000622143 SMARCA2P51531 1590 aa10□□□□□ -0.81
SRSF4-207ENST00000622143 GSE1Q14687 1217 aa9.99□□□□□ -0.81
SRSF4-207ENST00000622143 THOC2Q8NI27 1593 aaKnown RBP9.99□□□□□ -0.81
SRSF4-207ENST00000622143 PYGBP11216 843 aa9.98□□□□□ -0.81
SRSF4-207ENST00000622143 PCDHB13Q9Y5F0 798 aa9.98□□□□□ -0.81
SRSF4-207ENST00000622143 ATMINO43313 823 aaPredicted RBP9.97□□□□□ -0.81
SRSF4-207ENST00000622143 IFNL1Q8IU54 200 aa9.97□□□□□ -0.81
SRSF4-207ENST00000622143 BMP2KQ9NSY1 1161 aaPredicted RBP9.96□□□□□ -0.82
SRSF4-207ENST00000622143 METRNQ9UJH8 293 aa9.96□□□□□ -0.82
SRSF4-207ENST00000622143 NCAPD3P42695 1498 aa9.96□□□□□ -0.82
SRSF4-207ENST00000622143 SPNS2Q8IVW8 549 aa9.95□□□□□ -0.82
SRSF4-207ENST00000622143 ATAD2BQ9ULI0 1458 aa9.94□□□□□ -0.82
SRSF4-207ENST00000622143 CHRM1P11229 460 aaPredicted RBP9.94□□□□□ -0.82
SRSF4-207ENST00000622143 TIE1P35590 1138 aa9.93□□□□□ -0.82
SRSF4-207ENST00000622143 ATN1P54259 1190 aaPredicted RBP9.92□□□□□ -0.82
SRSF4-207ENST00000622143 KIF21AQ7Z4S6 1674 aa9.91□□□□□ -0.82
SRSF4-207ENST00000622143 TTLL13PA6NNM8 815 aa9.9□□□□□ -0.82
SRSF4-207ENST00000622143 MAMSTRQ6ZN01 415 aa9.89□□□□□ -0.83
SRSF4-207ENST00000622143 CIZ1Q9ULV3 898 aaPredicted RBP9.89□□□□□ -0.83
SRSF4-207ENST00000622143 PCDHB8Q9UN66 801 aa9.89□□□□□ -0.83
SRSF4-207ENST00000622143 HMGXB3Q12766 1538 aa9.87□□□□□ -0.83
SRSF4-207ENST00000622143 SMARCA4P51532 1647 aa9.85□□□□□ -0.83
SRSF4-207ENST00000622143 BAZ1BQ9UIG0 1483 aaKnown RBP9.85□□□□□ -0.83
SRSF4-207ENST00000622143 SLC39A7Q92504 469 aa9.84□□□□□ -0.83
SRSF4-207ENST00000622143 C7P10643 843 aa9.83□□□□□ -0.84
SRSF4-207ENST00000622143 ZNF467Q7Z7K2 595 aaPredicted RBP9.83□□□□□ -0.84
SRSF4-207ENST00000622143 TMEM106CQ9BVX2 250 aa9.83□□□□□ -0.84
SRSF4-207ENST00000622143 SCUBE2Q9NQ36 999 aa9.83□□□□□ -0.84
SRSF4-207ENST00000622143 BAZ1AQ9NRL2 1556 aaPredicted RBP9.83□□□□□ -0.84
SRSF4-207ENST00000622143 LAMC3Q9Y6N6 1575 aa9.82□□□□□ -0.84
SRSF4-207ENST00000622143 POTEFA5A3E0 1075 aa9.81□□□□□ -0.84
SRSF4-207ENST00000622143 TRIM35Q9UPQ4 493 aa9.81□□□□□ -0.84
SRSF4-207ENST00000622143 RNF25Q96BH1 459 aaPredicted RBP9.78□□□□□ -0.84
SRSF4-207ENST00000622143 PDS5BQ9NTI5 1447 aa9.78□□□□□ -0.84
SRSF4-207ENST00000622143 PKD2Q13563 968 aa9.76□□□□□ -0.85
SRSF4-207ENST00000622143 IER5LQ5T953 404 aa9.76□□□□□ -0.85
SRSF4-207ENST00000622143 MRC2Q9UBG0 1479 aa9.76□□□□□ -0.85
SRSF4-207ENST00000622143 PSEN1P49768 467 aa9.75□□□□□ -0.85
SRSF4-207ENST00000622143 PDAP1Q13442 181 aaKnown RBP9.75□□□□□ -0.85
SRSF4-207ENST00000622143 COLQQ9Y215 455 aaPredicted RBP9.75□□□□□ -0.85
SRSF4-207ENST00000622143 WDR62O43379 1518 aa9.73□□□□□ -0.85
SRSF4-207ENST00000622143 ST18O60284 1047 aa9.73□□□□□ -0.85
SRSF4-207ENST00000622143 RIMBP3CA6NJZ7 1639 aa9.72□□□□□ -0.85
SRSF4-207ENST00000622143 RIMBP3BA6NNM3 1639 aa9.72□□□□□ -0.85
SRSF4-207ENST00000622143 RIMBP3Q9UFD9 1639 aa9.72□□□□□ -0.85
SRSF4-207ENST00000622143 IRX5P78411 483 aaPredicted RBP9.71□□□□□ -0.86
SRSF4-207ENST00000622143 RIOK3O14730 519 aaKnown RBP9.69□□□□□ -0.86
SRSF4-207ENST00000622143 ECM2O94769 699 aaPredicted RBP9.69□□□□□ -0.86
SRSF4-207ENST00000622143 MROH2BQ7Z745 1585 aa9.67□□□□□ -0.86
SRSF4-207ENST00000622143 CADPSQ9ULU8 1353 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms