RNA–Protein interactions for RNA: ENST00000606377.6

PAX6-231, Transcript of paired box 6, human

APPRIS P4 TSL 5 BASIC

Gene PAX6, Length 6,901 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAX6-231	ENST00000606377	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.35	□□□□□ -0.27
PAX6-231	ENST00000606377	PLEKHD1	A6NEE1	506 aa		13.34	□□□□□ -0.27
PAX6-231	ENST00000606377	CCDC136	Q96JN2	1154 aa		13.33	□□□□□ -0.28
PAX6-231	ENST00000606377	RGL3	Q3MIN7	710 aa		13.32	□□□□□ -0.28
PAX6-231	ENST00000606377	ANP32B	Q92688	251 aa	Known RBP	13.32	□□□□□ -0.28
PAX6-231	ENST00000606377	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.31	□□□□□ -0.28
PAX6-231	ENST00000606377	RSF1	Q96T23	1441 aa	Predicted RBP	13.31	□□□□□ -0.28
PAX6-231	ENST00000606377	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.3	□□□□□ -0.28
PAX6-231	ENST00000606377	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
PAX6-231	ENST00000606377	GOLGA3	Q08378	1498 aa		13.29	□□□□□ -0.28
PAX6-231	ENST00000606377	IRX6	P78412	446 aa	Predicted RBP	13.28	□□□□□ -0.28
PAX6-231	ENST00000606377	CEP162	Q5TB80	1403 aa		13.25	□□□□□ -0.29
PAX6-231	ENST00000606377	ERCC6	Q03468	1493 aa		13.25	□□□□□ -0.29
PAX6-231	ENST00000606377	MYH16	Q9H6N6	1097 aa		13.25	□□□□□ -0.29
PAX6-231	ENST00000606377	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.25	□□□□□ -0.29
PAX6-231	ENST00000606377	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.24	□□□□□ -0.29
PAX6-231	ENST00000606377	MIER1	Q8N108	512 aa		13.24	□□□□□ -0.29
PAX6-231	ENST00000606377	NACAD	O15069	1562 aa		13.22	□□□□□ -0.29
PAX6-231	ENST00000606377	HAP1	P54257	671 aa	Predicted RBP	13.22	□□□□□ -0.29
PAX6-231	ENST00000606377	SENP3-EIF4A1	A0A087X0R7	540 aa		13.21	□□□□□ -0.29
PAX6-231	ENST00000606377	KIF27	Q86VH2	1401 aa		13.21	□□□□□ -0.29
PAX6-231	ENST00000606377	EEA1	Q15075	1411 aa		13.2	□□□□□ -0.3
PAX6-231	ENST00000606377	PPM1G	O15355	546 aa	Predicted RBP	13.2	□□□□□ -0.3
PAX6-231	ENST00000606377	ARX	Q96QS3	562 aa		13.2	□□□□□ -0.3
PAX6-231	ENST00000606377	MYO15B	Q96JP2	1530 aa		13.19	□□□□□ -0.3
PAX6-231	ENST00000606377	NBR1	Q14596	966 aa		13.19	□□□□□ -0.3
PAX6-231	ENST00000606377	CARD11	Q9BXL7	1154 aa		13.16	□□□□□ -0.3
PAX6-231	ENST00000606377	KNSTRN	Q9Y448	316 aa		13.16	□□□□□ -0.3
PAX6-231	ENST00000606377	CFAP53	Q96M91	514 aa		13.15	□□□□□ -0.3
PAX6-231	ENST00000606377	CEP164	Q9UPV0	1460 aa		13.13	□□□□□ -0.31
PAX6-231	ENST00000606377	EIF4G1	Q04637	1599 aa	Known RBP	13.13	□□□□□ -0.31
PAX6-231	ENST00000606377	CDCA8	Q53HL2	280 aa		13.13	□□□□□ -0.31
PAX6-231	ENST00000606377	LMOD2	Q6P5Q4	547 aa		13.12	□□□□□ -0.31
PAX6-231	ENST00000606377	EIF5B	O60841	1220 aa	Known RBP	13.12	□□□□□ -0.31
PAX6-231	ENST00000606377	POGK	Q9P215	609 aa		13.12	□□□□□ -0.31
PAX6-231	ENST00000606377	LAS1L	Q9Y4W2	734 aa	Known RBP	13.11	□□□□□ -0.31
PAX6-231	ENST00000606377	NEUROD2	Q15784	382 aa		13.1	□□□□□ -0.31
PAX6-231	ENST00000606377	TNIK	Q9UKE5	1360 aa		13.09	□□□□□ -0.31
PAX6-231	ENST00000606377	TNNT2	P45379	298 aa	Predicted RBP	13.09	□□□□□ -0.31
PAX6-231	ENST00000606377	SIN3A	Q96ST3	1273 aa		13.08	□□□□□ -0.32
PAX6-231	ENST00000606377	TRH	P20396	242 aa	Predicted RBP	13.06	□□□□□ -0.32
PAX6-231	ENST00000606377	CCNB3	Q8WWL7	1395 aa		13.06	□□□□□ -0.32
PAX6-231	ENST00000606377	FTSJ3	Q8IY81	847 aa	Known RBP	13.06	□□□□□ -0.32
PAX6-231	ENST00000606377	MLEC	Q14165	292 aa		13.05	□□□□□ -0.32
PAX6-231	ENST00000606377	MAPK8IP3	Q9UPT6	1336 aa		13.05	□□□□□ -0.32
PAX6-231	ENST00000606377	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.05	□□□□□ -0.32
PAX6-231	ENST00000606377	CC2D1B	Q5T0F9	858 aa	Known RBP	13.05	□□□□□ -0.32
PAX6-231	ENST00000606377	BECN1	Q14457	450 aa		13.02	□□□□□ -0.33
PAX6-231	ENST00000606377	NUDC	Q9Y266	331 aa		13.02	□□□□□ -0.33
PAX6-231	ENST00000606377	CUX2	O14529	1486 aa		13.02	□□□□□ -0.33
PAX6-231	ENST00000606377	CARMIL1	Q5VZK9	1371 aa		13.01	□□□□□ -0.33
PAX6-231	ENST00000606377	CDK11B	P21127	795 aa	Known RBP	13	□□□□□ -0.33
PAX6-231	ENST00000606377	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13	□□□□□ -0.33
PAX6-231	ENST00000606377	CECR2	Q9BXF3	1484 aa		13	□□□□□ -0.33
PAX6-231	ENST00000606377	DCAF11	Q8TEB1	546 aa		13	□□□□□ -0.33
PAX6-231	ENST00000606377	U2SURP	O15042	1029 aa	Known RBP	13	□□□□□ -0.33
PAX6-231	ENST00000606377	NCL	P19338	710 aa	Known RBP	13	□□□□□ -0.33
PAX6-231	ENST00000606377	KANK1	Q14678	1352 aa		13	□□□□□ -0.33
PAX6-231	ENST00000606377	DDRGK1	Q96HY6	314 aa		13	□□□□□ -0.33
PAX6-231	ENST00000606377	CASC1	Q6TDU7	716 aa		12.99	□□□□□ -0.33
PAX6-231	ENST00000606377	TPRN	Q4KMQ1	711 aa		12.98	□□□□□ -0.33
PAX6-231	ENST00000606377	FHAD1	B1AJZ9	1412 aa		12.98	□□□□□ -0.33
PAX6-231	ENST00000606377	FRAT1	Q92837	279 aa	Predicted RBP	12.98	□□□□□ -0.33
PAX6-231	ENST00000606377	NPHP1	O15259	732 aa		12.98	□□□□□ -0.33
PAX6-231	ENST00000606377	SOX12	O15370	315 aa		12.97	□□□□□ -0.33
PAX6-231	ENST00000606377	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.96	□□□□□ -0.33
PAX6-231	ENST00000606377	SOGA1	O94964	1423 aa		12.95	□□□□□ -0.34
PAX6-231	ENST00000606377	SRPK2	P78362	688 aa	Known RBP	12.95	□□□□□ -0.34
PAX6-231	ENST00000606377	TMF1	P82094	1093 aa		12.95	□□□□□ -0.34
PAX6-231	ENST00000606377	TAOK2	Q9UL54	1235 aa		12.93	□□□□□ -0.34
PAX6-231	ENST00000606377	GGT6	Q6P531	493 aa		12.93	□□□□□ -0.34
PAX6-231	ENST00000606377	GOLGA6L22	H0YM25	854 aa		12.93	□□□□□ -0.34
PAX6-231	ENST00000606377	OS9	Q13438	667 aa	Predicted RBP	12.92	□□□□□ -0.34
PAX6-231	ENST00000606377	TULP1	O00294	542 aa	Predicted RBP	12.92	□□□□□ -0.34
PAX6-231	ENST00000606377	HDGF	P51858	240 aa	Known RBP	12.92	□□□□□ -0.34
PAX6-231	ENST00000606377	RGS3	P49796	1198 aa		12.91	□□□□□ -0.34
PAX6-231	ENST00000606377	STK26	Q9P289	416 aa		12.91	□□□□□ -0.34
PAX6-231	ENST00000606377	PNN	Q9H307	717 aa	Known RBP	12.91	□□□□□ -0.34
PAX6-231	ENST00000606377	ZRSR1	Q15695	479 aa	Known RBP	12.89	□□□□□ -0.35
PAX6-231	ENST00000606377	FOXD1	Q16676	465 aa		12.89	□□□□□ -0.35
PAX6-231	ENST00000606377	ABCC8	Q09428	1581 aa		12.89	□□□□□ -0.35
PAX6-231	ENST00000606377	ARHGAP35	Q9NRY4	1499 aa		12.89	□□□□□ -0.35
PAX6-231	ENST00000606377	MORC1	Q86VD1	984 aa		12.88	□□□□□ -0.35
PAX6-231	ENST00000606377	TRIM44	Q96DX7	344 aa	Predicted RBP	12.88	□□□□□ -0.35
PAX6-231	ENST00000606377	CCDC88B	A6NC98	1476 aa		12.87	□□□□□ -0.35
PAX6-231	ENST00000606377	PKD2	Q13563	968 aa		12.86	□□□□□ -0.35
PAX6-231	ENST00000606377	CARMIL2	Q6F5E8	1435 aa		12.86	□□□□□ -0.35
PAX6-231	ENST00000606377	SETD5	Q9C0A6	1442 aa		12.85	□□□□□ -0.35
PAX6-231	ENST00000606377	GOLGA2	Q08379	1002 aa		12.84	□□□□□ -0.35
PAX6-231	ENST00000606377	CHMP4B	Q9H444	224 aa	Known RBP	12.84	□□□□□ -0.35
PAX6-231	ENST00000606377	MS4A1	P11836	297 aa		12.84	□□□□□ -0.35
PAX6-231	ENST00000606377	PPP4R2	Q9NY27	417 aa		12.84	□□□□□ -0.35
PAX6-231	ENST00000606377	NAP1L2	Q9ULW6	460 aa	Predicted RBP	12.83	□□□□□ -0.35
PAX6-231	ENST00000606377	PDS5B	Q9NTI5	1447 aa		12.83	□□□□□ -0.35
PAX6-231	ENST00000606377	ANP32E	Q9BTT0	268 aa		12.83	□□□□□ -0.36
PAX6-231	ENST00000606377	PAK3	O75914	559 aa	Predicted RBP	12.83	□□□□□ -0.36
PAX6-231	ENST00000606377	PTMA	P06454	111 aa	Known RBP	12.83	□□□□□ -0.36
PAX6-231	ENST00000606377	TDRD9	Q8NDG6	1382 aa	Known RBP	12.83	□□□□□ -0.36
PAX6-231	ENST00000606377	MROH2B	Q7Z745	1585 aa		12.83	□□□□□ -0.36
PAX6-231	ENST00000606377	HSPA5	P11021	654 aa	Known RBP	12.83	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms