RNA–Protein interactions for RNA: ENST00000605814.1

HMGB1P50-201, Transcript of high mobility group box 1 pseudogene 50, humanhuman

BASIC

Gene HMGB1P50, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P50-201ENST00000605814 CCDC61Q9Y6R9 512 aa8.79□□□□□ -1
HMGB1P50-201ENST00000605814 SLC39A7Q92504 469 aa8.77□□□□□ -1.01
HMGB1P50-201ENST00000605814 METRNQ9UJH8 293 aa8.77□□□□□ -1.01
HMGB1P50-201ENST00000605814 ATMINO43313 823 aaPredicted RBP8.75□□□□□ -1.01
HMGB1P50-201ENST00000605814 ASTLQ6HA08 431 aaPredicted RBP8.75□□□□□ -1.01
HMGB1P50-201ENST00000605814 RASEFQ8IZ41 740 aa8.75□□□□□ -1.01
HMGB1P50-201ENST00000605814 C7P10643 843 aa8.74□□□□□ -1.01
HMGB1P50-201ENST00000605814 KIF12Q96FN5 646 aa8.74□□□□□ -1.01
HMGB1P50-201ENST00000605814 PELP1Q8IZL8 1130 aaKnown RBP8.73□□□□□ -1.01
HMGB1P50-201ENST00000605814 FAM212AQ96EL1 285 aa8.73□□□□□ -1.01
HMGB1P50-201ENST00000605814 FBXO3Q9UK99 471 aa8.73□□□□□ -1.01
HMGB1P50-201ENST00000605814 MAP3K13O43283 966 aa8.72□□□□□ -1.01
HMGB1P50-201ENST00000605814 ATN1P54259 1190 aaPredicted RBP8.69□□□□□ -1.02
HMGB1P50-201ENST00000605814 PCDHB13Q9Y5F0 798 aa8.69□□□□□ -1.02
HMGB1P50-201ENST00000605814 MAMSTRQ6ZN01 415 aa8.68□□□□□ -1.02
HMGB1P50-201ENST00000605814 OTUD5Q96G74 571 aa8.68□□□□□ -1.02
HMGB1P50-201ENST00000605814 POTEB2H3BUK9 544 aa8.67□□□□□ -1.02
HMGB1P50-201ENST00000605814 TIE1P35590 1138 aa8.67□□□□□ -1.02
HMGB1P50-201ENST00000605814 BMP2KQ9NSY1 1161 aaPredicted RBP8.67□□□□□ -1.02
HMGB1P50-201ENST00000605814 SEC24BO95487 1268 aa8.66□□□□□ -1.02
HMGB1P50-201ENST00000605814 SCUBE2Q9NQ36 999 aa8.66□□□□□ -1.02
HMGB1P50-201ENST00000605814 NUBP1P53384 320 aa8.64□□□□□ -1.03
HMGB1P50-201ENST00000605814 DCAF8Q5TAQ9 597 aa8.64□□□□□ -1.03
HMGB1P50-201ENST00000605814 KLHL34Q8N239 644 aa8.64□□□□□ -1.03
HMGB1P50-201ENST00000605814 SGIP1Q9BQI5 828 aa8.64□□□□□ -1.03
HMGB1P50-201ENST00000605814 TRPC6Q9Y210 931 aa8.64□□□□□ -1.03
HMGB1P50-201ENST00000605814 TTLL13PA6NNM8 815 aa8.61□□□□□ -1.03
HMGB1P50-201ENST00000605814 TRIM35Q9UPQ4 493 aa8.6□□□□□ -1.03
HMGB1P50-201ENST00000605814 PLSCR2Q9NRY7 297 aa8.58□□□□□ -1.04
HMGB1P50-201ENST00000605814 IFNL1Q8IU54 200 aa8.57□□□□□ -1.04
HMGB1P50-201ENST00000605814 TMEM106CQ9BVX2 250 aa8.57□□□□□ -1.04
HMGB1P50-201ENST00000605814 PYGBP11216 843 aa8.56□□□□□ -1.04
HMGB1P50-201ENST00000605814 VASPP50552 380 aaPredicted RBP8.55□□□□□ -1.04
HMGB1P50-201ENST00000605814 IER5LQ5T953 404 aa8.55□□□□□ -1.04
HMGB1P50-201ENST00000605814 POTEMA6NI47 508 aa8.54□□□□□ -1.04
HMGB1P50-201ENST00000605814 PLCG2P16885 1265 aa8.53□□□□□ -1.04
HMGB1P50-201ENST00000605814 POTEJP0CG39 1038 aa8.52□□□□□ -1.05
HMGB1P50-201ENST00000605814 GSE1Q14687 1217 aa8.52□□□□□ -1.05
HMGB1P50-201ENST00000605814 POTEGQ6S5H5 508 aa8.51□□□□□ -1.05
HMGB1P50-201ENST00000605814 COLQQ9Y215 455 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P50-201ENST00000605814 GOLGA2Q08379 1002 aa8.5□□□□□ -1.05
HMGB1P50-201ENST00000605814 FAM163AQ96GL9 167 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P50-201ENST00000605814 POTEFA5A3E0 1075 aa8.49□□□□□ -1.05
HMGB1P50-201ENST00000605814 PCDHB8Q9UN66 801 aa8.47□□□□□ -1.05
HMGB1P50-201ENST00000605814 ZNF467Q7Z7K2 595 aaPredicted RBP8.46□□□□□ -1.06
HMGB1P50-201ENST00000605814 SLAIN1Q8ND83 568 aa8.44□□□□□ -1.06
HMGB1P50-201ENST00000605814 CIZ1Q9ULV3 898 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P50-201ENST00000605814 MKRN3Q13064 507 aaKnown RBP8.42□□□□□ -1.06
HMGB1P50-201ENST00000605814 SPOCK2Q92563 424 aa8.41□□□□□ -1.06
HMGB1P50-201ENST00000605814 OCEL1Q9H607 264 aa8.41□□□□□ -1.06
HMGB1P50-201ENST00000605814 PCDH10Q9P2E7 1040 aa8.4□□□□□ -1.06
HMGB1P50-201ENST00000605814 IRX5P78411 483 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P50-201ENST00000605814 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.37□□□□□ -1.07
HMGB1P50-201ENST00000605814 PSEN1P49768 467 aa8.36□□□□□ -1.07
HMGB1P50-201ENST00000605814 C3orf67Q6ZVT6 689 aa8.36□□□□□ -1.07
HMGB1P50-201ENST00000605814 CHRM1P11229 460 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P50-201ENST00000605814 G3V3G9 751 aa8.33□□□□□ -1.08
HMGB1P50-201ENST00000605814 PDAP1Q13442 181 aaKnown RBP8.33□□□□□ -1.08
HMGB1P50-201ENST00000605814 IFNLR1Q8IU57 520 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P50-201ENST00000605814 SNPHO15079 494 aa8.32□□□□□ -1.08
HMGB1P50-201ENST00000605814 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.32□□□□□ -1.08
HMGB1P50-201ENST00000605814 LCE2DQ5TA82 110 aaPredicted RBP8.31□□□□□ -1.08
HMGB1P50-201ENST00000605814 L3MBTL3Q96JM7 780 aaPredicted RBP8.31□□□□□ -1.08
HMGB1P50-201ENST00000605814 ST18O60284 1047 aa8.28□□□□□ -1.08
HMGB1P50-201ENST00000605814 CABP2Q9NPB3 220 aa8.28□□□□□ -1.08
HMGB1P50-201ENST00000605814 TRIM41Q8WV44 630 aa8.27□□□□□ -1.09
HMGB1P50-201ENST00000605814 CDAN1Q8IWY9 1227 aa8.26□□□□□ -1.09
HMGB1P50-201ENST00000605814 PDCD7Q8N8D1 485 aaKnown RBP8.25□□□□□ -1.09
HMGB1P50-201ENST00000605814 TMEM121BQ9BXQ6 578 aaPredicted RBP8.23□□□□□ -1.09
HMGB1P50-201ENST00000605814 MARVELD3Q96A59 401 aa8.18□□□□□ -1.1
HMGB1P50-201ENST00000605814 BOLA1Q9Y3E2 137 aa8.18□□□□□ -1.1
HMGB1P50-201ENST00000605814 EMP3P54852 163 aa8.17□□□□□ -1.1
HMGB1P50-201ENST00000605814 DPY19L2Q6NUT2 758 aa8.16□□□□□ -1.1
HMGB1P50-201ENST00000605814 RIOK3O14730 519 aaKnown RBP8.14□□□□□ -1.11
HMGB1P50-201ENST00000605814 EFCAB3Q8N7B9 438 aa8.14□□□□□ -1.11
HMGB1P50-201ENST00000605814 ZNF710Q8N1W2 664 aa8.13□□□□□ -1.11
HMGB1P50-201ENST00000605814 TAOK2Q9UL54 1235 aa8.12□□□□□ -1.11
HMGB1P50-201ENST00000605814 VGFO15240 615 aaPredicted RBP8.11□□□□□ -1.11
HMGB1P50-201ENST00000605814 ILDR1Q86SU0 546 aaPredicted RBP8.11□□□□□ -1.11
HMGB1P50-201ENST00000605814 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.09□□□□□ -1.11
HMGB1P50-201ENST00000605814 FAM205CA6NFA0 338 aa8.09□□□□□ -1.11
HMGB1P50-201ENST00000605814 RIMBP2O15034 1052 aa8.09□□□□□ -1.11
HMGB1P50-201ENST00000605814 ZFP91Q96JP5 570 aaPredicted RBP8.09□□□□□ -1.11
HMGB1P50-201ENST00000605814 DOK7Q18PE1 504 aa8.08□□□□□ -1.12
HMGB1P50-201ENST00000605814 SOX12O15370 315 aa8.07□□□□□ -1.12
HMGB1P50-201ENST00000605814 HS3ST6Q96QI5 342 aa8.06□□□□□ -1.12
HMGB1P50-201ENST00000605814 RNF25Q96BH1 459 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P50-201ENST00000605814 MICALL2Q8IY33 904 aa8.03□□□□□ -1.12
HMGB1P50-201ENST00000605814 ERBB3P21860 1342 aa8.03□□□□□ -1.12
HMGB1P50-201ENST00000605814 SPNS2Q8IVW8 549 aa8.02□□□□□ -1.13
HMGB1P50-201ENST00000605814 PHF8Q9UPP1 1060 aa8.02□□□□□ -1.13
HMGB1P50-201ENST00000605814 STK24Q9Y6E0 443 aa8.02□□□□□ -1.13
HMGB1P50-201ENST00000605814 ECM2O94769 699 aaPredicted RBP8.01□□□□□ -1.13
HMGB1P50-201ENST00000605814 NLRP6P59044 892 aa8.01□□□□□ -1.13
HMGB1P50-201ENST00000605814 MMRN1Q13201 1228 aa8.01□□□□□ -1.13
HMGB1P50-201ENST00000605814 BCL11BQ9C0K0 894 aaPredicted RBP8.01□□□□□ -1.13
HMGB1P50-201ENST00000605814 STK25O00506 426 aa8□□□□□ -1.13
HMGB1P50-201ENST00000605814 HOXB3P14651 431 aaPredicted RBP7.99□□□□□ -1.13
HMGB1P50-201ENST00000605814 HOXB1P14653 301 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P50-201ENST00000605814 MS4A4AQ96JQ5 239 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms