RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 HS6ST3Q8IZP7 471 aa11.21□□□□□ -0.61
SMAD4-208ENST00000589706 NUBP1P53384 320 aa11.18□□□□□ -0.62
SMAD4-208ENST00000589706 RNF25Q96BH1 459 aaPredicted RBP11.17□□□□□ -0.62
SMAD4-208ENST00000589706 TPRNQ4KMQ1 711 aa11.15□□□□□ -0.62
SMAD4-208ENST00000589706 SPDYE1Q8NFV5 336 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-208ENST00000589706 DCAF8Q5TAQ9 597 aa11.14□□□□□ -0.63
SMAD4-208ENST00000589706 RB1CC1Q8TDY2 1594 aa11.12□□□□□ -0.63
SMAD4-208ENST00000589706 RIOK3O14730 519 aaKnown RBP11.1□□□□□ -0.63
SMAD4-208ENST00000589706 AKT1S1Q96B36 256 aa11.1□□□□□ -0.63
SMAD4-208ENST00000589706 RBM42Q9BTD8 480 aaKnown RBP11.08□□□□□ -0.64
SMAD4-208ENST00000589706 FAM212AQ96EL1 285 aa11.07□□□□□ -0.64
SMAD4-208ENST00000589706 CREBZFQ9NS37 354 aa11.07□□□□□ -0.64
SMAD4-208ENST00000589706 CLEC11AQ9Y240 323 aa11.07□□□□□ -0.64
SMAD4-208ENST00000589706 PRR29P0C7W0 189 aa11.06□□□□□ -0.64
SMAD4-208ENST00000589706 NKX1-1Q15270 411 aaPredicted RBP11.05□□□□□ -0.64
SMAD4-208ENST00000589706 MNX1P50219 401 aaPredicted RBP11.04□□□□□ -0.64
SMAD4-208ENST00000589706 VGFO15240 615 aaPredicted RBP11.02□□□□□ -0.65
SMAD4-208ENST00000589706 CHRM1P11229 460 aaPredicted RBP11.02□□□□□ -0.65
SMAD4-208ENST00000589706 STK25O00506 426 aa11.01□□□□□ -0.65
SMAD4-208ENST00000589706 GTPBP6O43824 516 aaPredicted RBP11.01□□□□□ -0.65
SMAD4-208ENST00000589706 NBR1Q14596 966 aa11.01□□□□□ -0.65
SMAD4-208ENST00000589706 REM2Q8IYK8 340 aaPredicted RBP10.99□□□□□ -0.65
SMAD4-208ENST00000589706 RASEFQ8IZ41 740 aa10.97□□□□□ -0.65
SMAD4-208ENST00000589706 SGIP1Q9BQI5 828 aa10.96□□□□□ -0.65
SMAD4-208ENST00000589706 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.92□□□□□ -0.66
SMAD4-208ENST00000589706 ZFP91Q96JP5 570 aaPredicted RBP10.92□□□□□ -0.66
SMAD4-208ENST00000589706 STK24Q9Y6E0 443 aa10.92□□□□□ -0.66
SMAD4-208ENST00000589706 BCL11BQ9C0K0 894 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-208ENST00000589706 NACADO15069 1562 aa10.9□□□□□ -0.66
SMAD4-208ENST00000589706 PYGBP11216 843 aa10.9□□□□□ -0.66
SMAD4-208ENST00000589706 RYDENQ9NUL5 291 aaKnown RBP10.89□□□□□ -0.67
SMAD4-208ENST00000589706 UNC13AQ9UPW8 1703 aa10.87□□□□□ -0.67
SMAD4-208ENST00000589706 PITPNM1O00562 1244 aa10.85□□□□□ -0.67
SMAD4-208ENST00000589706 CECR2Q9BXF3 1484 aa10.85□□□□□ -0.67
SMAD4-208ENST00000589706 BICRAQ9NZM4 1560 aa10.83□□□□□ -0.68
SMAD4-208ENST00000589706 CC2D2AQ9P2K1 1620 aa10.78□□□□□ -0.68
SMAD4-208ENST00000589706 ZNF467Q7Z7K2 595 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-208ENST00000589706 TSPYL2Q9H2G4 693 aaPredicted RBP10.75□□□□□ -0.69
SMAD4-208ENST00000589706 CHADLQ6NUI6 762 aa10.73□□□□□ -0.69
SMAD4-208ENST00000589706 P3H3Q8IVL6 736 aa10.71□□□□□ -0.69
SMAD4-208ENST00000589706 PDAP1Q13442 181 aaKnown RBP10.7□□□□□ -0.7
SMAD4-208ENST00000589706 FARP1Q9Y4F1 1045 aaPredicted RBP10.69□□□□□ -0.7
SMAD4-208ENST00000589706 WDR70Q9NW82 654 aa10.68□□□□□ -0.7
SMAD4-208ENST00000589706 PCDHB8Q9UN66 801 aa10.67□□□□□ -0.7
SMAD4-208ENST00000589706 PCDHB13Q9Y5F0 798 aa10.67□□□□□ -0.7
SMAD4-208ENST00000589706 CADPS2Q86UW7 1296 aa10.66□□□□□ -0.7
SMAD4-208ENST00000589706 PSEN1P49768 467 aa10.63□□□□□ -0.71
SMAD4-208ENST00000589706 ZNF579Q8NAF0 562 aaKnown RBP10.63□□□□□ -0.71
SMAD4-208ENST00000589706 CCDC61Q9Y6R9 512 aa10.63□□□□□ -0.71
SMAD4-208ENST00000589706 KCNV2Q8TDN2 545 aa10.62□□□□□ -0.71
SMAD4-208ENST00000589706 MFRPQ9BY79 579 aa10.62□□□□□ -0.71
SMAD4-208ENST00000589706 EIF4G1Q04637 1599 aaKnown RBP10.6□□□□□ -0.71
SMAD4-208ENST00000589706 PRKAR2AP13861 404 aaKnown RBP10.59□□□□□ -0.71
SMAD4-208ENST00000589706 SHROOM4Q9ULL8 1493 aa10.58□□□□□ -0.72
SMAD4-208ENST00000589706 MYO15BQ96JP2 1530 aa10.55□□□□□ -0.72
SMAD4-208ENST00000589706 PAK3O75914 559 aaPredicted RBP10.54□□□□□ -0.72
SMAD4-208ENST00000589706 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.54□□□□□ -0.72
SMAD4-208ENST00000589706 CUX2O14529 1486 aa10.54□□□□□ -0.72
SMAD4-208ENST00000589706 FXR2P51116 673 aaKnown RBP eCLIP10.53□□□□□ -0.72
SMAD4-208ENST00000589706 LMOD2Q6P5Q4 547 aa10.53□□□□□ -0.72
SMAD4-208ENST00000589706 IFNL1Q8IU54 200 aa10.53□□□□□ -0.72
SMAD4-208ENST00000589706 PPP1R37O75864 691 aa10.52□□□□□ -0.73
SMAD4-208ENST00000589706 NLRP6P59044 892 aa10.52□□□□□ -0.73
SMAD4-208ENST00000589706 SOX12O15370 315 aa10.51□□□□□ -0.73
SMAD4-208ENST00000589706 EFCAB3Q8N7B9 438 aa10.51□□□□□ -0.73
SMAD4-208ENST00000589706 FBXO22Q8NEZ5 403 aa10.51□□□□□ -0.73
SMAD4-208ENST00000589706 MAP3K13O43283 966 aa10.5□□□□□ -0.73
SMAD4-208ENST00000589706 CABP2Q9NPB3 220 aa10.5□□□□□ -0.73
SMAD4-208ENST00000589706 ARHGEF1Q92888 912 aaKnown RBP10.49□□□□□ -0.73
SMAD4-208ENST00000589706 KIF12Q96FN5 646 aa10.49□□□□□ -0.73
SMAD4-208ENST00000589706 GTF3C3Q9Y5Q9 886 aa10.49□□□□□ -0.73
SMAD4-208ENST00000589706 TULP1O00294 542 aaPredicted RBP10.48□□□□□ -0.73
SMAD4-208ENST00000589706 TMEM132AQ24JP5 1023 aa10.48□□□□□ -0.73
SMAD4-208ENST00000589706 PHF8Q9UPP1 1060 aa10.48□□□□□ -0.73
SMAD4-208ENST00000589706 E2F4Q16254 413 aa10.47□□□□□ -0.73
SMAD4-208ENST00000589706 TIMELESSQ9UNS1 1208 aa10.44□□□□□ -0.74
SMAD4-208ENST00000589706 TESPA1A2RU30 521 aaPredicted RBP10.38□□□□□ -0.75
SMAD4-208ENST00000589706 PIP4P2Q8N4L2 257 aa10.38□□□□□ -0.75
SMAD4-208ENST00000589706 NCKAP5LQ9HCH0 1330 aa10.37□□□□□ -0.75
SMAD4-208ENST00000589706 ERCC6Q03468 1493 aa10.37□□□□□ -0.75
SMAD4-208ENST00000589706 SEMA3EO15041 775 aa10.37□□□□□ -0.75
SMAD4-208ENST00000589706 PDE4AP27815 886 aa10.37□□□□□ -0.75
SMAD4-208ENST00000589706 ERICH6Q7L0X2 663 aa10.37□□□□□ -0.75
SMAD4-208ENST00000589706 ZC3H15Q8WU90 426 aaKnown RBP10.37□□□□□ -0.75
SMAD4-208ENST00000589706 ZRANB1Q9UGI0 708 aa10.37□□□□□ -0.75
SMAD4-208ENST00000589706 CHRDL2Q6WN34 429 aa10.36□□□□□ -0.75
SMAD4-208ENST00000589706 LARP6Q9BRS8 491 aaKnown RBP10.36□□□□□ -0.75
SMAD4-208ENST00000589706 MS4A4AQ96JQ5 239 aa10.35□□□□□ -0.75
SMAD4-208ENST00000589706 SCRIBQ14160 1630 aa10.35□□□□□ -0.75
SMAD4-208ENST00000589706 GOLGA2Q08379 1002 aa10.33□□□□□ -0.76
SMAD4-208ENST00000589706 MFSD10Q14728 455 aa10.33□□□□□ -0.76
SMAD4-208ENST00000589706 CD44P16070 742 aaKnown RBP10.32□□□□□ -0.76
SMAD4-208ENST00000589706 BRPF1P55201 1214 aaPredicted RBP10.32□□□□□ -0.76
SMAD4-208ENST00000589706 PHF12Q96QT6 1004 aa10.32□□□□□ -0.76
SMAD4-208ENST00000589706 CRISPLD2Q9H0B8 497 aa10.32□□□□□ -0.76
SMAD4-208ENST00000589706 SMYD5Q6GMV2 418 aa10.3□□□□□ -0.76
SMAD4-208ENST00000589706 DDX27Q96GQ7 796 aaKnown RBP10.3□□□□□ -0.76
SMAD4-208ENST00000589706 TMEM106CQ9BVX2 250 aa10.29□□□□□ -0.76
SMAD4-208ENST00000589706 ARIH1Q9Y4X5 557 aaPredicted RBP10.29□□□□□ -0.76
SMAD4-208ENST00000589706 SLC24A3Q9HC58 644 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 188.7 ms