RNA–Protein interactions for RNA: ENST00000589677.5

SMARCA4-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,181 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-214ENST00000589677 WDR43Q15061 677 aaKnown RBP eCLIP19.29■□□□□ 0.68
SMARCA4-214ENST00000589677 LAS1LQ9Y4W2 734 aaKnown RBP19.29■□□□□ 0.68
SMARCA4-214ENST00000589677 TSHZ2Q9NRE2 1034 aa19.29■□□□□ 0.68
SMARCA4-214ENST00000589677 GOLGA6L22H0YM25 854 aa19.28■□□□□ 0.68
SMARCA4-214ENST00000589677 HIRIP3Q9BW71 556 aaPredicted RBP19.28■□□□□ 0.68
SMARCA4-214ENST00000589677 CLIP1P30622 1438 aa19.28■□□□□ 0.68
SMARCA4-214ENST00000589677 CEP162Q5TB80 1403 aa19.26■□□□□ 0.67
SMARCA4-214ENST00000589677 RSF1Q96T23 1441 aaPredicted RBP19.26■□□□□ 0.67
SMARCA4-214ENST00000589677 EEA1Q15075 1411 aa19.22■□□□□ 0.67
SMARCA4-214ENST00000589677 CCER2I3L3R5 266 aa19.2■□□□□ 0.66
SMARCA4-214ENST00000589677 L1TD1Q5T7N2 865 aaKnown RBP19.17■□□□□ 0.66
SMARCA4-214ENST00000589677 GOLGA3Q08378 1498 aa19.16■□□□□ 0.66
SMARCA4-214ENST00000589677 NCLP19338 710 aaKnown RBP19.15■□□□□ 0.66
SMARCA4-214ENST00000589677 B4GALNT3Q6L9W6 998 aa19.15■□□□□ 0.66
SMARCA4-214ENST00000589677 ZNF777Q9ULD5 760 aaPredicted RBP19.14■□□□□ 0.66
SMARCA4-214ENST00000589677 TNIKQ9UKE5 1360 aa19.13■□□□□ 0.65
SMARCA4-214ENST00000589677 SLC24A1O60721 1099 aa19.12■□□□□ 0.65
SMARCA4-214ENST00000589677 PTMAP06454 111 aaKnown RBP19.1■□□□□ 0.65
SMARCA4-214ENST00000589677 DNTTIP2Q5QJE6 756 aaKnown RBP19.08■□□□□ 0.64
SMARCA4-214ENST00000589677 CHIC2Q9UKJ5 165 aa19.08■□□□□ 0.64
SMARCA4-214ENST00000589677 MYH16Q9H6N6 1097 aa19.07■□□□□ 0.64
SMARCA4-214ENST00000589677 ARID3CA6NKF2 412 aa19.06■□□□□ 0.64
SMARCA4-214ENST00000589677 TIMELESSQ9UNS1 1208 aa19.05■□□□□ 0.64
SMARCA4-214ENST00000589677 MTUS2Q5JR59 1369 aa19.01■□□□□ 0.63
SMARCA4-214ENST00000589677 CDK11BP21127 795 aaKnown RBP19.01■□□□□ 0.63
SMARCA4-214ENST00000589677 BAZ1BQ9UIG0 1483 aaKnown RBP19■□□□□ 0.63
SMARCA4-214ENST00000589677 BAZ1AQ9NRL2 1556 aaPredicted RBP19■□□□□ 0.63
SMARCA4-214ENST00000589677 IPO9Q96P70 1041 aaKnown RBP18.97■□□□□ 0.63
SMARCA4-214ENST00000589677 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.97■□□□□ 0.63
SMARCA4-214ENST00000589677 KDM2AQ9Y2K7 1162 aa18.96■□□□□ 0.63
SMARCA4-214ENST00000589677 RGS3P49796 1198 aa18.95■□□□□ 0.62
SMARCA4-214ENST00000589677 MSNP26038 577 aaKnown RBP18.94■□□□□ 0.62
SMARCA4-214ENST00000589677 PNNQ9H307 717 aaKnown RBP18.93■□□□□ 0.62
SMARCA4-214ENST00000589677 TCERG1O14776 1098 aaKnown RBP18.93■□□□□ 0.62
SMARCA4-214ENST00000589677 WRNQ14191 1432 aaPredicted RBP eCLIP18.93■□□□□ 0.625e-6■■□□□ 12.5
SMARCA4-214ENST00000589677 USP35Q9P2H5 1018 aa18.91■□□□□ 0.62
SMARCA4-214ENST00000589677 SIN3AQ96ST3 1273 aa18.91■□□□□ 0.62
SMARCA4-214ENST00000589677 CEP164Q9UPV0 1460 aa18.91■□□□□ 0.62
SMARCA4-214ENST00000589677 RSPH6AQ9H0K4 717 aa18.89■□□□□ 0.61
SMARCA4-214ENST00000589677 CASC1Q6TDU7 716 aa18.89■□□□□ 0.61
SMARCA4-214ENST00000589677 RRP7BPQ9NSQ0 103 aa18.88■□□□□ 0.61
SMARCA4-214ENST00000589677 HSP90AB1P08238 724 aaKnown RBP18.87■□□□□ 0.61
SMARCA4-214ENST00000589677 FANCIQ9NVI1 1328 aa18.86■□□□□ 0.61
SMARCA4-214ENST00000589677 CECR2Q9BXF3 1484 aa18.86■□□□□ 0.61
SMARCA4-214ENST00000589677 HSCBQ8IWL3 235 aa18.85■□□□□ 0.61
SMARCA4-214ENST00000589677 TSPY4P0CV99 314 aa18.85■□□□□ 0.61
SMARCA4-214ENST00000589677 TSPY10P0CW01 314 aa18.85■□□□□ 0.61
SMARCA4-214ENST00000589677 CHAF1AQ13111 956 aaPredicted RBP18.84■□□□□ 0.61
SMARCA4-214ENST00000589677 PTMSP20962 102 aa18.84■□□□□ 0.61
SMARCA4-214ENST00000589677 FTSJ3Q8IY81 847 aaKnown RBP18.83■□□□□ 0.61
SMARCA4-214ENST00000589677 CDCA8Q53HL2 280 aa18.83■□□□□ 0.6
SMARCA4-214ENST00000589677 SENP3-EIF4A1A0A087X0R7 540 aa18.82■□□□□ 0.6
SMARCA4-214ENST00000589677 CCNB3Q8WWL7 1395 aa18.82■□□□□ 0.6
SMARCA4-214ENST00000589677 KNSTRNQ9Y448 316 aa18.81■□□□□ 0.6
SMARCA4-214ENST00000589677 MS4A1P11836 297 aa18.81■□□□□ 0.6
SMARCA4-214ENST00000589677 CHGAP10645 457 aaKnown RBP18.79■□□□□ 0.6
SMARCA4-214ENST00000589677 CARD11Q9BXL7 1154 aa18.79■□□□□ 0.6
SMARCA4-214ENST00000589677 CFAP53Q96M91 514 aa18.78■□□□□ 0.6
SMARCA4-214ENST00000589677 CHMP4BQ9H444 224 aaKnown RBP18.78■□□□□ 0.6
SMARCA4-214ENST00000589677 KIF27Q86VH2 1401 aa18.77■□□□□ 0.6
SMARCA4-214ENST00000589677 ZRSR1Q15695 479 aaKnown RBP18.77■□□□□ 0.6
SMARCA4-214ENST00000589677 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.76■□□□□ 0.592e-8■■■□□ 17.8
SMARCA4-214ENST00000589677 GOLGA6L3A6NEY3 463 aa18.76■□□□□ 0.59
SMARCA4-214ENST00000589677 CHMP7Q8WUX9 453 aaPredicted RBP18.75■□□□□ 0.59
SMARCA4-214ENST00000589677 HSP90AA2PQ14568 343 aaPredicted RBP18.75■□□□□ 0.59
SMARCA4-214ENST00000589677 GOLGA6L6A8MZA4 724 aa18.74■□□□□ 0.59
SMARCA4-214ENST00000589677 GBP4Q96PP9 640 aa18.73■□□□□ 0.59
SMARCA4-214ENST00000589677 PLCB2Q00722 1185 aa18.72■□□□□ 0.59
SMARCA4-214ENST00000589677 FRAT1Q92837 279 aaPredicted RBP18.7■□□□□ 0.58
SMARCA4-214ENST00000589677 SETD5Q9C0A6 1442 aa18.7■□□□□ 0.58
SMARCA4-214ENST00000589677 ARID4BQ4LE39 1312 aaPredicted RBP18.7■□□□□ 0.58
SMARCA4-214ENST00000589677 NPM1P06748 294 aaKnown RBP eCLIP18.7■□□□□ 0.58
SMARCA4-214ENST00000589677 RCAN3Q9UKA8 241 aa18.7■□□□□ 0.58
SMARCA4-214ENST00000589677 NRDCO43847 1150 aa18.69■□□□□ 0.58
SMARCA4-214ENST00000589677 GSE1Q14687 1217 aa18.69■□□□□ 0.58
SMARCA4-214ENST00000589677 NUDCQ9Y266 331 aa18.69■□□□□ 0.58
SMARCA4-214ENST00000589677 CFAP44Q96MT7 982 aa18.68■□□□□ 0.58
SMARCA4-214ENST00000589677 HSPA5P11021 654 aaKnown RBP18.68■□□□□ 0.58
SMARCA4-214ENST00000589677 MROH2BQ7Z745 1585 aa18.67■□□□□ 0.58
SMARCA4-214ENST00000589677 VPS8Q8N3P4 1428 aa18.65■□□□□ 0.58
SMARCA4-214ENST00000589677 KIAA2012Q0VF49 1180 aa18.64■□□□□ 0.58
SMARCA4-214ENST00000589677 VSIG10Q8N0Z9 540 aa18.64■□□□□ 0.58
SMARCA4-214ENST00000589677 GZF1Q9H116 711 aaPredicted RBP18.63■□□□□ 0.57
SMARCA4-214ENST00000589677 SPRYD3Q8NCJ5 442 aa18.63■□□□□ 0.57
SMARCA4-214ENST00000589677 SLKQ9H2G2 1235 aaPredicted RBP18.63■□□□□ 0.57
SMARCA4-214ENST00000589677 STAG3Q9UJ98 1225 aa18.61■□□□□ 0.57
SMARCA4-214ENST00000589677 TPRNQ4KMQ1 711 aa18.59■□□□□ 0.57
SMARCA4-214ENST00000589677 CC2D1BQ5T0F9 858 aaKnown RBP18.59■□□□□ 0.57
SMARCA4-214ENST00000589677 NEUROD2Q15784 382 aa18.59■□□□□ 0.57
SMARCA4-214ENST00000589677 SMARCA2P51531 1590 aa18.59■□□□□ 0.57
SMARCA4-214ENST00000589677 MAPK8IP3Q9UPT6 1336 aa18.58■□□□□ 0.56
SMARCA4-214ENST00000589677 RGL3Q3MIN7 710 aa18.58■□□□□ 0.56
SMARCA4-214ENST00000589677 ERCC6Q03468 1493 aa18.57■□□□□ 0.56
SMARCA4-214ENST00000589677 PPP1R15AO75807 674 aaPredicted RBP18.57■□□□□ 0.56
SMARCA4-214ENST00000589677 CCDC88BA6NC98 1476 aa18.57■□□□□ 0.56
SMARCA4-214ENST00000589677 RALBP1Q15311 655 aa18.56■□□□□ 0.56
SMARCA4-214ENST00000589677 PDE3BQ13370 1112 aa18.55■□□□□ 0.56
SMARCA4-214ENST00000589677 FHAD1B1AJZ9 1412 aa18.55■□□□□ 0.56
SMARCA4-214ENST00000589677 KTN1Q86UP2 1357 aaKnown RBP18.54■□□□□ 0.56
SMARCA4-214ENST00000589677 PDE4AP27815 886 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms