RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 GALR2O43603 387 aaPredicted RBP13.96□□□□□ -0.17
SMCHD1-205ENST00000581383 FBXO3Q9UK99 471 aa13.87□□□□□ -0.19
SMCHD1-205ENST00000581383 ZBTB47Q9UFB7 747 aaPredicted RBP13.82□□□□□ -0.2
SMCHD1-205ENST00000581383 MNX1P50219 401 aaPredicted RBP13.81□□□□□ -0.2
SMCHD1-205ENST00000581383 TSPYL2Q9H2G4 693 aaPredicted RBP13.8□□□□□ -0.2
SMCHD1-205ENST00000581383 PELP1Q8IZL8 1130 aaKnown RBP13.76□□□□□ -0.21
SMCHD1-205ENST00000581383 PHF12Q96QT6 1004 aa13.72□□□□□ -0.21
SMCHD1-205ENST00000581383 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
SMCHD1-205ENST00000581383 MAMSTRQ6ZN01 415 aa13.67□□□□□ -0.22
SMCHD1-205ENST00000581383 METRNQ9UJH8 293 aa13.67□□□□□ -0.22
SMCHD1-205ENST00000581383 POTEJP0CG39 1038 aa13.66□□□□□ -0.22
SMCHD1-205ENST00000581383 LCE2DQ5TA82 110 aaPredicted RBP13.66□□□□□ -0.22
SMCHD1-205ENST00000581383 FAM163AQ96GL9 167 aaPredicted RBP13.64□□□□□ -0.23
SMCHD1-205ENST00000581383 C7P10643 843 aa13.63□□□□□ -0.23
SMCHD1-205ENST00000581383 SLC39A7Q92504 469 aa13.63□□□□□ -0.23
SMCHD1-205ENST00000581383 ASTLQ6HA08 431 aaPredicted RBP13.61□□□□□ -0.23
SMCHD1-205ENST00000581383 VASPP50552 380 aaPredicted RBP13.6□□□□□ -0.23
SMCHD1-205ENST00000581383 RASEFQ8IZ41 740 aa13.6□□□□□ -0.23
SMCHD1-205ENST00000581383 FAM212AQ96EL1 285 aa13.59□□□□□ -0.23
SMCHD1-205ENST00000581383 ATMINO43313 823 aaPredicted RBP13.57□□□□□ -0.24
SMCHD1-205ENST00000581383 DCAF8Q5TAQ9 597 aa13.54□□□□□ -0.24
SMCHD1-205ENST00000581383 SCUBE2Q9NQ36 999 aa13.54□□□□□ -0.24
SMCHD1-205ENST00000581383 CCDC61Q9Y6R9 512 aa13.54□□□□□ -0.24
SMCHD1-205ENST00000581383 MS4A3Q96HJ5 214 aa13.52□□□□□ -0.25
SMCHD1-205ENST00000581383 NUBP1P53384 320 aa13.5□□□□□ -0.25
SMCHD1-205ENST00000581383 KIF12Q96FN5 646 aa13.47□□□□□ -0.25
SMCHD1-205ENST00000581383 MAP3K13O43283 966 aa13.45□□□□□ -0.26
SMCHD1-205ENST00000581383 PCDHB13Q9Y5F0 798 aa13.42□□□□□ -0.26
SMCHD1-205ENST00000581383 CDAN1Q8IWY9 1227 aa13.41□□□□□ -0.26
SMCHD1-205ENST00000581383 ATN1P54259 1190 aaPredicted RBP13.38□□□□□ -0.27
SMCHD1-205ENST00000581383 GSE1Q14687 1217 aa13.38□□□□□ -0.27
SMCHD1-205ENST00000581383 PYGBP11216 843 aa13.37□□□□□ -0.27
SMCHD1-205ENST00000581383 SPOCK2Q92563 424 aa13.35□□□□□ -0.27
SMCHD1-205ENST00000581383 CIZ1Q9ULV3 898 aaPredicted RBP13.34□□□□□ -0.27
SMCHD1-205ENST00000581383 SGIP1Q9BQI5 828 aa13.33□□□□□ -0.28
SMCHD1-205ENST00000581383 POTEFA5A3E0 1075 aa13.32□□□□□ -0.28
SMCHD1-205ENST00000581383 IFNLR1Q8IU57 520 aaPredicted RBP13.32□□□□□ -0.28
SMCHD1-205ENST00000581383 TIE1P35590 1138 aa13.28□□□□□ -0.28
SMCHD1-205ENST00000581383 IFNL1Q8IU54 200 aa13.27□□□□□ -0.29
SMCHD1-205ENST00000581383 BMP2KQ9NSY1 1161 aaPredicted RBP13.27□□□□□ -0.29
SMCHD1-205ENST00000581383 TRPC6Q9Y210 931 aa13.27□□□□□ -0.29
SMCHD1-205ENST00000581383 SEC24BO95487 1268 aa13.22□□□□□ -0.29
SMCHD1-205ENST00000581383 TMEM106CQ9BVX2 250 aa13.22□□□□□ -0.29
SMCHD1-205ENST00000581383 TTLL13PA6NNM8 815 aa13.21□□□□□ -0.29
SMCHD1-205ENST00000581383 PCDHB8Q9UN66 801 aa13.2□□□□□ -0.3
SMCHD1-205ENST00000581383 ZNF467Q7Z7K2 595 aaPredicted RBP13.18□□□□□ -0.3
SMCHD1-205ENST00000581383 TRIM35Q9UPQ4 493 aa13.18□□□□□ -0.3
SMCHD1-205ENST00000581383 MMRN1Q13201 1228 aa13.16□□□□□ -0.3
SMCHD1-205ENST00000581383 ST18O60284 1047 aa13.14□□□□□ -0.31
SMCHD1-205ENST00000581383 GOLGA2Q08379 1002 aa13.14□□□□□ -0.31
SMCHD1-205ENST00000581383 COLQQ9Y215 455 aaPredicted RBP13.14□□□□□ -0.31
SMCHD1-205ENST00000581383 SPNS2Q8IVW8 549 aa13.11□□□□□ -0.31
SMCHD1-205ENST00000581383 CHRM1P11229 460 aaPredicted RBP13.09□□□□□ -0.31
SMCHD1-205ENST00000581383 SLAIN1Q8ND83 568 aa13.07□□□□□ -0.32
SMCHD1-205ENST00000581383 PLCG2P16885 1265 aa13.06□□□□□ -0.32
SMCHD1-205ENST00000581383 IER5LQ5T953 404 aa13.06□□□□□ -0.32
SMCHD1-205ENST00000581383 TRIM41Q8WV44 630 aa13.05□□□□□ -0.32
SMCHD1-205ENST00000581383 PSEN1P49768 467 aa13.03□□□□□ -0.32
SMCHD1-205ENST00000581383 MKRN3Q13064 507 aaKnown RBP13.02□□□□□ -0.33
SMCHD1-205ENST00000581383 PDAP1Q13442 181 aaKnown RBP13□□□□□ -0.33
SMCHD1-205ENST00000581383 TMEM121BQ9BXQ6 578 aaPredicted RBP12.94□□□□□ -0.34
SMCHD1-205ENST00000581383 OCEL1Q9H607 264 aa12.94□□□□□ -0.34
SMCHD1-205ENST00000581383 CABP2Q9NPB3 220 aa12.91□□□□□ -0.34
SMCHD1-205ENST00000581383 IRX5P78411 483 aaPredicted RBP12.88□□□□□ -0.35
SMCHD1-205ENST00000581383 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.88□□□□□ -0.352e-7■■■□□ 14.6
SMCHD1-205ENST00000581383 RIOK3O14730 519 aaKnown RBP12.86□□□□□ -0.35
SMCHD1-205ENST00000581383 G3V3G9 751 aa12.85□□□□□ -0.35
SMCHD1-205ENST00000581383 ECM2O94769 699 aaPredicted RBP12.85□□□□□ -0.35
SMCHD1-205ENST00000581383 TAOK2Q9UL54 1235 aa12.85□□□□□ -0.35
SMCHD1-205ENST00000581383 SNPHO15079 494 aa12.84□□□□□ -0.35
SMCHD1-205ENST00000581383 MARVELD3Q96A59 401 aa12.82□□□□□ -0.36
SMCHD1-205ENST00000581383 VGFO15240 615 aaPredicted RBP12.8□□□□□ -0.36
SMCHD1-205ENST00000581383 L3MBTL3Q96JM7 780 aaPredicted RBP12.8□□□□□ -0.36
SMCHD1-205ENST00000581383 C3orf67Q6ZVT6 689 aa12.79□□□□□ -0.36
SMCHD1-205ENST00000581383 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.79□□□□□ -0.36
SMCHD1-205ENST00000581383 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.76□□□□□ -0.37
SMCHD1-205ENST00000581383 ZFP91Q96JP5 570 aaPredicted RBP12.76□□□□□ -0.37
SMCHD1-205ENST00000581383 EFCAB3Q8N7B9 438 aa12.73□□□□□ -0.37
SMCHD1-205ENST00000581383 RNF25Q96BH1 459 aaPredicted RBP12.73□□□□□ -0.37
SMCHD1-205ENST00000581383 PDCD7Q8N8D1 485 aaKnown RBP12.72□□□□□ -0.37
SMCHD1-205ENST00000581383 STK24Q9Y6E0 443 aa12.69□□□□□ -0.38
SMCHD1-205ENST00000581383 STK25O00506 426 aa12.68□□□□□ -0.38
SMCHD1-205ENST00000581383 KRTAP3-3Q9BYR6 98 aa12.67□□□□□ -0.38
SMCHD1-205ENST00000581383 KRTAP3-2Q9BYR7 98 aa12.67□□□□□ -0.38
SMCHD1-205ENST00000581383 BCL11BQ9C0K0 894 aaPredicted RBP12.67□□□□□ -0.38
SMCHD1-205ENST00000581383 EMP3P54852 163 aa12.66□□□□□ -0.38
SMCHD1-205ENST00000581383 DPY19L2Q6NUT2 758 aa12.66□□□□□ -0.38
SMCHD1-205ENST00000581383 PKD2Q13563 968 aa12.64□□□□□ -0.39
SMCHD1-205ENST00000581383 BOLA1Q9Y3E2 137 aa12.64□□□□□ -0.39
SMCHD1-205ENST00000581383 SOX12O15370 315 aa12.63□□□□□ -0.39
SMCHD1-205ENST00000581383 RGL2O15211 777 aa12.61□□□□□ -0.39
SMCHD1-205ENST00000581383 HS3ST6Q96QI5 342 aa12.61□□□□□ -0.39
SMCHD1-205ENST00000581383 POTEB3A0JP26 581 aa12.59□□□□□ -0.39
SMCHD1-205ENST00000581383 POTEBQ6S5H4 581 aa12.59□□□□□ -0.39
SMCHD1-205ENST00000581383 FAM205CA6NFA0 338 aa12.57□□□□□ -0.4
SMCHD1-205ENST00000581383 PHF8Q9UPP1 1060 aa12.57□□□□□ -0.4
SMCHD1-205ENST00000581383 NLRP6P59044 892 aa12.56□□□□□ -0.4
SMCHD1-205ENST00000581383 ILDR1Q86SU0 546 aaPredicted RBP12.56□□□□□ -0.4
SMCHD1-205ENST00000581383 RTN4Q9NQC3 1192 aaKnown RBP12.53□□□□□ -0.4
SMCHD1-205ENST00000581383 AMER1Q5JTC6 1135 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms