RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 MYH16Q9H6N6 1097 aa14.14□□□□□ -0.15
SEC22B-201ENST00000578049 MYO15BQ96JP2 1530 aa14.14□□□□□ -0.15
SEC22B-201ENST00000578049 BCL11AQ9H165 835 aa14.13□□□□□ -0.15
SEC22B-201ENST00000578049 CEP164Q9UPV0 1460 aa14.12□□□□□ -0.15
SEC22B-201ENST00000578049 CDCA8Q53HL2 280 aa14.12□□□□□ -0.15
SEC22B-201ENST00000578049 ARID3CA6NKF2 412 aa14.1□□□□□ -0.15
SEC22B-201ENST00000578049 TNNT2P45379 298 aaPredicted RBP14.09□□□□□ -0.15
SEC22B-201ENST00000578049 SALL2Q9Y467 1007 aaPredicted RBP14.09□□□□□ -0.15
SEC22B-201ENST00000578049 CCER2I3L3R5 266 aa14.09□□□□□ -0.15
SEC22B-201ENST00000578049 NCLP19338 710 aaKnown RBP14.08□□□□□ -0.15
SEC22B-201ENST00000578049 CHIC2Q9UKJ5 165 aa14.08□□□□□ -0.16
SEC22B-201ENST00000578049 NOP58Q9Y2X3 529 aaKnown RBP14.07□□□□□ -0.16
SEC22B-201ENST00000578049 SUPT16HQ9Y5B9 1047 aaKnown RBP14.07□□□□□ -0.16
SEC22B-201ENST00000578049 IRX6P78412 446 aaPredicted RBP14.06□□□□□ -0.16
SEC22B-201ENST00000578049 WRNQ14191 1432 aaPredicted RBP eCLIP14.04□□□□□ -0.16
SEC22B-201ENST00000578049 ESF1Q9H501 851 aaKnown RBP14.03□□□□□ -0.16
SEC22B-201ENST00000578049 CHMP4BQ9H444 224 aaKnown RBP14.03□□□□□ -0.16
SEC22B-201ENST00000578049 CHGAP10645 457 aaKnown RBP14.01□□□□□ -0.17
SEC22B-201ENST00000578049 CFAP53Q96M91 514 aa14.01□□□□□ -0.17
SEC22B-201ENST00000578049 MS4A1P11836 297 aa14□□□□□ -0.17
SEC22B-201ENST00000578049 STAG3Q9UJ98 1225 aa14□□□□□ -0.17
SEC22B-201ENST00000578049 KIF27Q86VH2 1401 aa14□□□□□ -0.17
SEC22B-201ENST00000578049 KDM2AQ9Y2K7 1162 aa13.98□□□□□ -0.17
SEC22B-201ENST00000578049 KNSTRNQ9Y448 316 aa13.96□□□□□ -0.17
SEC22B-201ENST00000578049 ARXQ96QS3 562 aa13.96□□□□□ -0.18
SEC22B-201ENST00000578049 NPM1P06748 294 aaKnown RBP eCLIP13.96□□□□□ -0.18
SEC22B-201ENST00000578049 CASC1Q6TDU7 716 aa13.96□□□□□ -0.18
SEC22B-201ENST00000578049 FHAD1B1AJZ9 1412 aa13.95□□□□□ -0.18
SEC22B-201ENST00000578049 L1TD1Q5T7N2 865 aaKnown RBP13.94□□□□□ -0.18
SEC22B-201ENST00000578049 HIRIP3Q9BW71 556 aaPredicted RBP13.94□□□□□ -0.18
SEC22B-201ENST00000578049 CCNB3Q8WWL7 1395 aa13.94□□□□□ -0.18
SEC22B-201ENST00000578049 RRP7BPQ9NSQ0 103 aa13.94□□□□□ -0.18
SEC22B-201ENST00000578049 RB1CC1Q8TDY2 1594 aa13.94□□□□□ -0.18
SEC22B-201ENST00000578049 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.94□□□□□ -0.183e-8■□□□□ 9.8
SEC22B-201ENST00000578049 CFAP44Q96MT7 982 aa13.92□□□□□ -0.18
SEC22B-201ENST00000578049 PTMAP06454 111 aaKnown RBP13.92□□□□□ -0.18
SEC22B-201ENST00000578049 CARD11Q9BXL7 1154 aa13.91□□□□□ -0.18
SEC22B-201ENST00000578049 RBM19Q9Y4C8 960 aaKnown RBP13.9□□□□□ -0.19
SEC22B-201ENST00000578049 PLEKHD1A6NEE1 506 aa13.89□□□□□ -0.19
SEC22B-201ENST00000578049 FTSJ3Q8IY81 847 aaKnown RBP13.89□□□□□ -0.19
SEC22B-201ENST00000578049 NAP1L5Q96NT1 182 aaPredicted RBP13.87□□□□□ -0.19
SEC22B-201ENST00000578049 NUDCQ9Y266 331 aa13.87□□□□□ -0.19
SEC22B-201ENST00000578049 PTMSP20962 102 aa13.87□□□□□ -0.19
SEC22B-201ENST00000578049 ZRSR1Q15695 479 aaKnown RBP13.87□□□□□ -0.19
SEC22B-201ENST00000578049 VPS8Q8N3P4 1428 aa13.86□□□□□ -0.19
SEC22B-201ENST00000578049 ARID4BQ4LE39 1312 aaPredicted RBP13.86□□□□□ -0.19
SEC22B-201ENST00000578049 NACADO15069 1562 aa13.85□□□□□ -0.19
SEC22B-201ENST00000578049 DEKP35659 375 aaKnown RBP13.85□□□□□ -0.19
SEC22B-201ENST00000578049 CFDP1Q9UEE9 299 aaPredicted RBP13.84□□□□□ -0.19
SEC22B-201ENST00000578049 CDK11BP21127 795 aaKnown RBP13.84□□□□□ -0.19
SEC22B-201ENST00000578049 DNTTIP2Q5QJE6 756 aaKnown RBP13.84□□□□□ -0.19
SEC22B-201ENST00000578049 LAS1LQ9Y4W2 734 aaKnown RBP13.84□□□□□ -0.19
SEC22B-201ENST00000578049 NRDCO43847 1150 aa13.83□□□□□ -0.2
SEC22B-201ENST00000578049 PNNQ9H307 717 aaKnown RBP13.83□□□□□ -0.2
SEC22B-201ENST00000578049 TCERG1O14776 1098 aaKnown RBP13.83□□□□□ -0.2
SEC22B-201ENST00000578049 BAZ1AQ9NRL2 1556 aaPredicted RBP13.83□□□□□ -0.2
SEC22B-201ENST00000578049 SETD5Q9C0A6 1442 aa13.82□□□□□ -0.2
SEC22B-201ENST00000578049 MAPK8IP3Q9UPT6 1336 aa13.82□□□□□ -0.2
SEC22B-201ENST00000578049 B4GALNT3Q6L9W6 998 aa13.81□□□□□ -0.2
SEC22B-201ENST00000578049 CHMP7Q8WUX9 453 aaPredicted RBP13.81□□□□□ -0.2
SEC22B-201ENST00000578049 GOLGA6L6A8MZA4 724 aa13.81□□□□□ -0.2
SEC22B-201ENST00000578049 HAP1P54257 671 aaPredicted RBP13.81□□□□□ -0.2
SEC22B-201ENST00000578049 SIN3AQ96ST3 1273 aa13.8□□□□□ -0.2
SEC22B-201ENST00000578049 RGS3P49796 1198 aa13.8□□□□□ -0.2
SEC22B-201ENST00000578049 HSCBQ8IWL3 235 aa13.79□□□□□ -0.2
SEC22B-201ENST00000578049 BAZ1BQ9UIG0 1483 aaKnown RBP13.79□□□□□ -0.2
SEC22B-201ENST00000578049 HSP90AB1P08238 724 aaKnown RBP13.78□□□□□ -0.2
SEC22B-201ENST00000578049 TMF1P82094 1093 aa13.77□□□□□ -0.2
SEC22B-201ENST00000578049 CHAF1AQ13111 956 aaPredicted RBP13.77□□□□□ -0.2
SEC22B-201ENST00000578049 USP35Q9P2H5 1018 aa13.76□□□□□ -0.21
SEC22B-201ENST00000578049 MSNP26038 577 aaKnown RBP13.75□□□□□ -0.21
SEC22B-201ENST00000578049 RGL3Q3MIN7 710 aa13.74□□□□□ -0.21
SEC22B-201ENST00000578049 RALBP1Q15311 655 aa13.74□□□□□ -0.21
SEC22B-201ENST00000578049 TSHZ2Q9NRE2 1034 aa13.74□□□□□ -0.21
SEC22B-201ENST00000578049 PDE3BQ13370 1112 aa13.72□□□□□ -0.21
SEC22B-201ENST00000578049 GBP4Q96PP9 640 aa13.72□□□□□ -0.21
SEC22B-201ENST00000578049 KTN1Q86UP2 1357 aaKnown RBP13.71□□□□□ -0.21
SEC22B-201ENST00000578049 FRAT1Q92837 279 aaPredicted RBP13.7□□□□□ -0.22
SEC22B-201ENST00000578049 IPO9Q96P70 1041 aaKnown RBP13.7□□□□□ -0.22
SEC22B-201ENST00000578049 ARHGAP35Q9NRY4 1499 aa13.7□□□□□ -0.22
SEC22B-201ENST00000578049 MCCP23508 829 aa13.7□□□□□ -0.22
SEC22B-201ENST00000578049 RTN4Q9NQC3 1192 aaKnown RBP13.69□□□□□ -0.22
SEC22B-201ENST00000578049 PPP1R15AO75807 674 aaPredicted RBP13.69□□□□□ -0.22
SEC22B-201ENST00000578049 HSPA5P11021 654 aaKnown RBP13.69□□□□□ -0.22
SEC22B-201ENST00000578049 ROCK2O75116 1388 aaKnown RBP13.68□□□□□ -0.22
SEC22B-201ENST00000578049 RCAN3Q9UKA8 241 aa13.68□□□□□ -0.22
SEC22B-201ENST00000578049 IPO8O15397 1037 aaKnown RBP13.67□□□□□ -0.22
SEC22B-201ENST00000578049 CARMIL1Q5VZK9 1371 aa13.67□□□□□ -0.22
SEC22B-201ENST00000578049 PHLDB1Q86UU1 1377 aa13.66□□□□□ -0.22
SEC22B-201ENST00000578049 RWDD1Q9H446 243 aaPredicted RBP13.65□□□□□ -0.22
SEC22B-201ENST00000578049 GOLGA6L4A6NEF3 574 aa13.65□□□□□ -0.22
SEC22B-201ENST00000578049 NEUROD2Q15784 382 aa13.64□□□□□ -0.23
SEC22B-201ENST00000578049 SOGA1O94964 1423 aa13.63□□□□□ -0.23
SEC22B-201ENST00000578049 RAB3GAP2Q9H2M9 1393 aa13.63□□□□□ -0.23
SEC22B-201ENST00000578049 CALD1Q05682 793 aaKnown RBP13.63□□□□□ -0.23
SEC22B-201ENST00000578049 SYAP1Q96A49 352 aaPredicted RBP13.63□□□□□ -0.23
SEC22B-201ENST00000578049 KIAA2012Q0VF49 1180 aa13.62□□□□□ -0.23
SEC22B-201ENST00000578049 PMFBP1Q8TBY8 1022 aa13.62□□□□□ -0.23
SEC22B-201ENST00000578049 CC2D1BQ5T0F9 858 aaKnown RBP13.62□□□□□ -0.23
SEC22B-201ENST00000578049 FMN1Q68DA7 1419 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms