RNA–Protein interactions for RNA: ENST00000565912.1

CX3CL1-204, Transcript of C-X3-C motif chemokine ligand 1, humanhuman

TSL 1 (best) BASIC

Gene CX3CL1, Length 5,796 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1-204ENST00000565912 NACADO15069 1562 aa18.07■□□□□ 0.48
CX3CL1-204ENST00000565912 IRX6P78412 446 aaPredicted RBP18.06■□□□□ 0.48
CX3CL1-204ENST00000565912 PPP1R15AO75807 674 aaPredicted RBP18.04■□□□□ 0.48
CX3CL1-204ENST00000565912 GLIPR1L2Q4G1C9 344 aa18.04■□□□□ 0.48
CX3CL1-204ENST00000565912 HIRIP3Q9BW71 556 aaPredicted RBP18.03■□□□□ 0.48
CX3CL1-204ENST00000565912 RSF1Q96T23 1441 aaPredicted RBP18.01■□□□□ 0.47
CX3CL1-204ENST00000565912 CHMP7Q8WUX9 453 aaPredicted RBP18■□□□□ 0.47
CX3CL1-204ENST00000565912 MTUS2Q5JR59 1369 aa18■□□□□ 0.47
CX3CL1-204ENST00000565912 KCNH8Q96L42 1107 aa17.96■□□□□ 0.47
CX3CL1-204ENST00000565912 HAP1P54257 671 aaPredicted RBP17.96■□□□□ 0.47
CX3CL1-204ENST00000565912 NCLP19338 710 aaKnown RBP17.95■□□□□ 0.46
CX3CL1-204ENST00000565912 RRP7BPQ9NSQ0 103 aa17.94■□□□□ 0.46
CX3CL1-204ENST00000565912 EIF4G2P78344 907 aaKnown RBP eCLIP17.93■□□□□ 0.46
CX3CL1-204ENST00000565912 BAZ1BQ9UIG0 1483 aaKnown RBP17.92■□□□□ 0.46
CX3CL1-204ENST00000565912 RGL3Q3MIN7 710 aa17.9■□□□□ 0.46
CX3CL1-204ENST00000565912 BECN1Q14457 450 aa17.9■□□□□ 0.46
CX3CL1-204ENST00000565912 SENP3-EIF4A1A0A087X0R7 540 aa17.89■□□□□ 0.45
CX3CL1-204ENST00000565912 PPM1GO15355 546 aaPredicted RBP17.89■□□□□ 0.45
CX3CL1-204ENST00000565912 TULP1O00294 542 aaPredicted RBP17.87■□□□□ 0.45
CX3CL1-204ENST00000565912 ARID4BQ4LE39 1312 aaPredicted RBP17.87■□□□□ 0.45
CX3CL1-204ENST00000565912 MIER1Q8N108 512 aa17.86■□□□□ 0.45
CX3CL1-204ENST00000565912 TPRNQ4KMQ1 711 aa17.85■□□□□ 0.45
CX3CL1-204ENST00000565912 CFAP53Q96M91 514 aa17.85■□□□□ 0.45
CX3CL1-204ENST00000565912 TRIM44Q96DX7 344 aaPredicted RBP17.85■□□□□ 0.45
CX3CL1-204ENST00000565912 GOLGA6L22H0YM25 854 aa17.85■□□□□ 0.45
CX3CL1-204ENST00000565912 DCAF1Q9Y4B6 1507 aa17.85■□□□□ 0.45
CX3CL1-204ENST00000565912 DDRGK1Q96HY6 314 aa17.84■□□□□ 0.45
CX3CL1-204ENST00000565912 ZRSR1Q15695 479 aaKnown RBP17.83■□□□□ 0.45
CX3CL1-204ENST00000565912 CLIP1P30622 1438 aa17.82■□□□□ 0.44
CX3CL1-204ENST00000565912 PLEKHD1A6NEE1 506 aa17.81■□□□□ 0.44
CX3CL1-204ENST00000565912 WRNQ14191 1432 aaPredicted RBP eCLIP17.8■□□□□ 0.44
CX3CL1-204ENST00000565912 LAS1LQ9Y4W2 734 aaKnown RBP17.79■□□□□ 0.44
CX3CL1-204ENST00000565912 KNSTRNQ9Y448 316 aa17.79■□□□□ 0.44
CX3CL1-204ENST00000565912 LMOD2Q6P5Q4 547 aa17.79■□□□□ 0.44
CX3CL1-204ENST00000565912 CASC1Q6TDU7 716 aa17.78■□□□□ 0.44
CX3CL1-204ENST00000565912 NEUROD2Q15784 382 aa17.78■□□□□ 0.44
CX3CL1-204ENST00000565912 FTSJ3Q8IY81 847 aaKnown RBP17.78■□□□□ 0.44
CX3CL1-204ENST00000565912 PTMAP06454 111 aaKnown RBP17.77■□□□□ 0.44
CX3CL1-204ENST00000565912 TAOK2Q9UL54 1235 aa17.76■□□□□ 0.43
CX3CL1-204ENST00000565912 ANP32EQ9BTT0 268 aa17.76■□□□□ 0.43
CX3CL1-204ENST00000565912 CDCA8Q53HL2 280 aa17.74■□□□□ 0.43
CX3CL1-204ENST00000565912 NPHP1O15259 732 aa17.74■□□□□ 0.43
CX3CL1-204ENST00000565912 BAZ1AQ9NRL2 1556 aaPredicted RBP17.73■□□□□ 0.43
CX3CL1-204ENST00000565912 GOLGA3Q08378 1498 aa17.73■□□□□ 0.43
CX3CL1-204ENST00000565912 CECR2Q9BXF3 1484 aa17.73■□□□□ 0.43
CX3CL1-204ENST00000565912 MAPK8IP3Q9UPT6 1336 aa17.72■□□□□ 0.43
CX3CL1-204ENST00000565912 EEA1Q15075 1411 aa17.72■□□□□ 0.43
CX3CL1-204ENST00000565912 CARD11Q9BXL7 1154 aa17.7■□□□□ 0.42
CX3CL1-204ENST00000565912 DNTTIP2Q5QJE6 756 aaKnown RBP17.7■□□□□ 0.42
CX3CL1-204ENST00000565912 POGKQ9P215 609 aa17.69■□□□□ 0.42
CX3CL1-204ENST00000565912 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
CX3CL1-204ENST00000565912 CFDP1Q9UEE9 299 aaPredicted RBP17.68■□□□□ 0.42
CX3CL1-204ENST00000565912 KIF27Q86VH2 1401 aa17.68■□□□□ 0.42
CX3CL1-204ENST00000565912 TNNT2P45379 298 aaPredicted RBP17.67■□□□□ 0.42
CX3CL1-204ENST00000565912 ERCC6Q03468 1493 aa17.67■□□□□ 0.42
CX3CL1-204ENST00000565912 NUDCQ9Y266 331 aa17.67■□□□□ 0.42
CX3CL1-204ENST00000565912 CEP162Q5TB80 1403 aa17.67■□□□□ 0.42
CX3CL1-204ENST00000565912 FRAT1Q92837 279 aaPredicted RBP17.66■□□□□ 0.42
CX3CL1-204ENST00000565912 OS9Q13438 667 aaPredicted RBP17.65■□□□□ 0.42
CX3CL1-204ENST00000565912 SUPT16HQ9Y5B9 1047 aaKnown RBP17.64■□□□□ 0.41
CX3CL1-204ENST00000565912 PLCB2Q00722 1185 aa17.64■□□□□ 0.41
CX3CL1-204ENST00000565912 RGS3P49796 1198 aa17.63■□□□□ 0.41
CX3CL1-204ENST00000565912 FGD1P98174 961 aa17.63■□□□□ 0.41
CX3CL1-204ENST00000565912 NAP1L2Q9ULW6 460 aaPredicted RBP17.61■□□□□ 0.41
CX3CL1-204ENST00000565912 U2SURPO15042 1029 aaKnown RBP17.6■□□□□ 0.41
CX3CL1-204ENST00000565912 KCNJ4P48050 445 aa17.59■□□□□ 0.41
CX3CL1-204ENST00000565912 GOLGA2Q08379 1002 aa17.58■□□□□ 0.4
CX3CL1-204ENST00000565912 CC2D1BQ5T0F9 858 aaKnown RBP17.58■□□□□ 0.4
CX3CL1-204ENST00000565912 CEP164Q9UPV0 1460 aa17.57■□□□□ 0.4
CX3CL1-204ENST00000565912 HSP90AB1P08238 724 aaKnown RBP17.55■□□□□ 0.4
CX3CL1-204ENST00000565912 TNIKQ9UKE5 1360 aa17.54■□□□□ 0.4
CX3CL1-204ENST00000565912 CHMP4BQ9H444 224 aaKnown RBP17.53■□□□□ 0.4
CX3CL1-204ENST00000565912 SOX12O15370 315 aa17.53■□□□□ 0.4
CX3CL1-204ENST00000565912 GOLGA6L6A8MZA4 724 aa17.51■□□□□ 0.39
CX3CL1-204ENST00000565912 NAP1L5Q96NT1 182 aaPredicted RBP17.5■□□□□ 0.39
CX3CL1-204ENST00000565912 MS4A1P11836 297 aa17.49■□□□□ 0.39
CX3CL1-204ENST00000565912 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
CX3CL1-204ENST00000565912 ERICH6BQ5W0A0 696 aa17.49■□□□□ 0.39
CX3CL1-204ENST00000565912 SIN3AQ96ST3 1273 aa17.48■□□□□ 0.39
CX3CL1-204ENST00000565912 PNNQ9H307 717 aaKnown RBP17.48■□□□□ 0.39
CX3CL1-204ENST00000565912 NCBP3Q53F19 620 aaKnown RBP17.47■□□□□ 0.39
CX3CL1-204ENST00000565912 PPP4R2Q9NY27 417 aa17.47■□□□□ 0.39
CX3CL1-204ENST00000565912 GOLGA6L4A6NEF3 574 aa17.47■□□□□ 0.39
CX3CL1-204ENST00000565912 MLECQ14165 292 aa17.47■□□□□ 0.39
CX3CL1-204ENST00000565912 CLSTN1O94985 981 aa17.47■□□□□ 0.39
CX3CL1-204ENST00000565912 CUX2O14529 1486 aa17.45■□□□□ 0.38
CX3CL1-204ENST00000565912 ISY1Q9ULR0 285 aaKnown RBP17.45■□□□□ 0.38
CX3CL1-204ENST00000565912 NRDCO43847 1150 aa17.44■□□□□ 0.38
CX3CL1-204ENST00000565912 SRPK2P78362 688 aaKnown RBP17.44■□□□□ 0.38
CX3CL1-204ENST00000565912 RTN4Q9NQC3 1192 aaKnown RBP17.44■□□□□ 0.38
CX3CL1-204ENST00000565912 CCDC88BA6NC98 1476 aa17.44■□□□□ 0.38
CX3CL1-204ENST00000565912 TRHP20396 242 aaPredicted RBP17.43■□□□□ 0.38
CX3CL1-204ENST00000565912 TMF1P82094 1093 aa17.43■□□□□ 0.38
CX3CL1-204ENST00000565912 SAFB2Q14151 953 aaKnown RBP eCLIP17.43■□□□□ 0.38
CX3CL1-204ENST00000565912 DCAF11Q8TEB1 546 aa17.42■□□□□ 0.38
CX3CL1-204ENST00000565912 SOGA1O94964 1423 aa17.42■□□□□ 0.38
CX3CL1-204ENST00000565912 CARMIL1Q5VZK9 1371 aa17.42■□□□□ 0.38
CX3CL1-204ENST00000565912 EIF4G1Q04637 1599 aaKnown RBP17.42■□□□□ 0.38
CX3CL1-204ENST00000565912 HSCBQ8IWL3 235 aa17.4■□□□□ 0.38
CX3CL1-204ENST00000565912 B4GALNT3Q6L9W6 998 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms