RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 GALR2O43603 387 aaPredicted RBP10.97□□□□□ -0.65
HMGB1P33-201ENST00000563485 CLCN6P51797 869 aa10.97□□□□□ -0.65
HMGB1P33-201ENST00000563485 IFNLR1Q8IU57 520 aaPredicted RBP10.96□□□□□ -0.65
HMGB1P33-201ENST00000563485 FAM212AQ96EL1 285 aa10.92□□□□□ -0.66
HMGB1P33-201ENST00000563485 MS4A3Q96HJ5 214 aa10.9□□□□□ -0.66
HMGB1P33-201ENST00000563485 POTEIP0CG38 1075 aa10.89□□□□□ -0.67
HMGB1P33-201ENST00000563485 KIF12Q96FN5 646 aa10.89□□□□□ -0.67
HMGB1P33-201ENST00000563485 DCAF8Q5TAQ9 597 aa10.87□□□□□ -0.67
HMGB1P33-201ENST00000563485 MAP3K13O43283 966 aa10.86□□□□□ -0.67
HMGB1P33-201ENST00000563485 SPOCK2Q92563 424 aa10.86□□□□□ -0.67
HMGB1P33-201ENST00000563485 DCBLD2Q96PD2 775 aa10.86□□□□□ -0.67
HMGB1P33-201ENST00000563485 PYGBP11216 843 aa10.8□□□□□ -0.68
HMGB1P33-201ENST00000563485 GSE1Q14687 1217 aa10.79□□□□□ -0.68
HMGB1P33-201ENST00000563485 TRPC6Q9Y210 931 aa10.78□□□□□ -0.68
HMGB1P33-201ENST00000563485 PCDHB13Q9Y5F0 798 aa10.78□□□□□ -0.68
HMGB1P33-201ENST00000563485 SGIP1Q9BQI5 828 aa10.75□□□□□ -0.69
HMGB1P33-201ENST00000563485 CIZ1Q9ULV3 898 aaPredicted RBP10.75□□□□□ -0.69
HMGB1P33-201ENST00000563485 IFNL1Q8IU54 200 aa10.74□□□□□ -0.69
HMGB1P33-201ENST00000563485 ASTLQ6HA08 431 aaPredicted RBP10.73□□□□□ -0.69
HMGB1P33-201ENST00000563485 ATMINO43313 823 aaPredicted RBP10.72□□□□□ -0.69
HMGB1P33-201ENST00000563485 PELP1Q8IZL8 1130 aaKnown RBP10.72□□□□□ -0.69
HMGB1P33-201ENST00000563485 BMP2KQ9NSY1 1161 aaPredicted RBP10.72□□□□□ -0.69
HMGB1P33-201ENST00000563485 TIE1P35590 1138 aa10.69□□□□□ -0.7
HMGB1P33-201ENST00000563485 ATN1P54259 1190 aaPredicted RBP10.69□□□□□ -0.7
HMGB1P33-201ENST00000563485 PCDHB8Q9UN66 801 aa10.68□□□□□ -0.7
HMGB1P33-201ENST00000563485 CHRM1P11229 460 aaPredicted RBP10.67□□□□□ -0.7
HMGB1P33-201ENST00000563485 TTLL13PA6NNM8 815 aa10.66□□□□□ -0.7
HMGB1P33-201ENST00000563485 LHX8Q68G74 356 aa10.62□□□□□ -0.71
HMGB1P33-201ENST00000563485 ZNF467Q7Z7K2 595 aaPredicted RBP10.62□□□□□ -0.71
HMGB1P33-201ENST00000563485 TMEM106CQ9BVX2 250 aa10.62□□□□□ -0.71
HMGB1P33-201ENST00000563485 SLC39A7Q92504 469 aa10.61□□□□□ -0.71
HMGB1P33-201ENST00000563485 METRNQ9UJH8 293 aa10.6□□□□□ -0.71
HMGB1P33-201ENST00000563485 TRIM41Q8WV44 630 aa10.58□□□□□ -0.72
HMGB1P33-201ENST00000563485 TRIM35Q9UPQ4 493 aa10.58□□□□□ -0.72
HMGB1P33-201ENST00000563485 C7P10643 843 aa10.57□□□□□ -0.72
HMGB1P33-201ENST00000563485 POTEB2H3BUK9 544 aa10.55□□□□□ -0.72
HMGB1P33-201ENST00000563485 PSEN1P49768 467 aa10.53□□□□□ -0.72
HMGB1P33-201ENST00000563485 POTEFA5A3E0 1075 aa10.52□□□□□ -0.73
HMGB1P33-201ENST00000563485 RNF25Q96BH1 459 aaPredicted RBP10.51□□□□□ -0.73
HMGB1P33-201ENST00000563485 PDAP1Q13442 181 aaKnown RBP10.5□□□□□ -0.73
HMGB1P33-201ENST00000563485 IER5LQ5T953 404 aa10.49□□□□□ -0.73
HMGB1P33-201ENST00000563485 COLQQ9Y215 455 aaPredicted RBP10.49□□□□□ -0.73
HMGB1P33-201ENST00000563485 PKD2Q13563 968 aa10.48□□□□□ -0.73
HMGB1P33-201ENST00000563485 SEC24BO95487 1268 aa10.47□□□□□ -0.73
HMGB1P33-201ENST00000563485 RIOK3O14730 519 aaKnown RBP10.46□□□□□ -0.73
HMGB1P33-201ENST00000563485 ECM2O94769 699 aaPredicted RBP10.46□□□□□ -0.73
HMGB1P33-201ENST00000563485 POTEJP0CG39 1038 aa10.45□□□□□ -0.74
HMGB1P33-201ENST00000563485 IRX5P78411 483 aaPredicted RBP10.43□□□□□ -0.74
HMGB1P33-201ENST00000563485 GOLGA2Q08379 1002 aa10.42□□□□□ -0.74
HMGB1P33-201ENST00000563485 OTUD5Q96G74 571 aa10.42□□□□□ -0.74
HMGB1P33-201ENST00000563485 CABP2Q9NPB3 220 aa10.41□□□□□ -0.74
HMGB1P33-201ENST00000563485 VGFO15240 615 aaPredicted RBP10.4□□□□□ -0.74
HMGB1P33-201ENST00000563485 PLCG2P16885 1265 aa10.4□□□□□ -0.74
HMGB1P33-201ENST00000563485 MKRN3Q13064 507 aaKnown RBP10.4□□□□□ -0.74
HMGB1P33-201ENST00000563485 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.39□□□□□ -0.75
HMGB1P33-201ENST00000563485 RGL2O15211 777 aa10.39□□□□□ -0.75
HMGB1P33-201ENST00000563485 ZFP91Q96JP5 570 aaPredicted RBP10.39□□□□□ -0.75
HMGB1P33-201ENST00000563485 OCEL1Q9H607 264 aa10.38□□□□□ -0.75
HMGB1P33-201ENST00000563485 PDCD7Q8N8D1 485 aaKnown RBP10.34□□□□□ -0.75
HMGB1P33-201ENST00000563485 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.34□□□□□ -0.75
HMGB1P33-201ENST00000563485 MAMSTRQ6ZN01 415 aa10.33□□□□□ -0.76
HMGB1P33-201ENST00000563485 EFCAB3Q8N7B9 438 aa10.32□□□□□ -0.76
HMGB1P33-201ENST00000563485 SCUBE2Q9NQ36 999 aa10.32□□□□□ -0.76
HMGB1P33-201ENST00000563485 BCL11BQ9C0K0 894 aaPredicted RBP10.31□□□□□ -0.76
HMGB1P33-201ENST00000563485 TAOK2Q9UL54 1235 aa10.31□□□□□ -0.76
HMGB1P33-201ENST00000563485 ILDR1Q86SU0 546 aaPredicted RBP10.3□□□□□ -0.76
HMGB1P33-201ENST00000563485 STK25O00506 426 aa10.27□□□□□ -0.77
HMGB1P33-201ENST00000563485 DPY19L2Q6NUT2 758 aa10.27□□□□□ -0.77
HMGB1P33-201ENST00000563485 STK24Q9Y6E0 443 aa10.27□□□□□ -0.77
HMGB1P33-201ENST00000563485 SOX12O15370 315 aa10.22□□□□□ -0.77
HMGB1P33-201ENST00000563485 L3MBTL3Q96JM7 780 aaPredicted RBP10.22□□□□□ -0.77
HMGB1P33-201ENST00000563485 PHF8Q9UPP1 1060 aa10.22□□□□□ -0.77
HMGB1P33-201ENST00000563485 SLAIN1Q8ND83 568 aa10.19□□□□□ -0.78
HMGB1P33-201ENST00000563485 MS4A4AQ96JQ5 239 aa10.19□□□□□ -0.78
HMGB1P33-201ENST00000563485 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.17□□□□□ -0.78
HMGB1P33-201ENST00000563485 BOLA1Q9Y3E2 137 aa10.17□□□□□ -0.78
HMGB1P33-201ENST00000563485 C3orf67Q6ZVT6 689 aa10.16□□□□□ -0.78
HMGB1P33-201ENST00000563485 MFRPQ9BY79 579 aa10.16□□□□□ -0.78
HMGB1P33-201ENST00000563485 FBXO22Q8NEZ5 403 aa10.15□□□□□ -0.78
HMGB1P33-201ENST00000563485 G3V3G9 751 aa10.14□□□□□ -0.79
HMGB1P33-201ENST00000563485 NLRP6P59044 892 aa10.14□□□□□ -0.79
HMGB1P33-201ENST00000563485 HS6ST3Q8IZP7 471 aa10.14□□□□□ -0.79
HMGB1P33-201ENST00000563485 CHGAP10645 457 aaKnown RBP10.13□□□□□ -0.79
HMGB1P33-201ENST00000563485 MICALL2Q8IY33 904 aa10.1□□□□□ -0.79
HMGB1P33-201ENST00000563485 TMEM121BQ9BXQ6 578 aaPredicted RBP10.1□□□□□ -0.79
HMGB1P33-201ENST00000563485 FAM163AQ96GL9 167 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P33-201ENST00000563485 DCAF8L2P0C7V8 631 aa10.07□□□□□ -0.8
HMGB1P33-201ENST00000563485 LCE2DQ5TA82 110 aaPredicted RBP10.07□□□□□ -0.8
HMGB1P33-201ENST00000563485 AMER1Q5JTC6 1135 aaPredicted RBP10.05□□□□□ -0.8
HMGB1P33-201ENST00000563485 RTN4Q9NQC3 1192 aaKnown RBP10.05□□□□□ -0.8
HMGB1P33-201ENST00000563485 NKX1-1Q15270 411 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P33-201ENST00000563485 TMEM92Q6UXU6 159 aa10.02□□□□□ -0.81
HMGB1P33-201ENST00000563485 DNAJC5Q9H3Z4 198 aa10.02□□□□□ -0.81
HMGB1P33-201ENST00000563485 PPP1R37O75864 691 aa10.01□□□□□ -0.81
HMGB1P33-201ENST00000563485 SNPHO15079 494 aa9.99□□□□□ -0.81
HMGB1P33-201ENST00000563485 ST18O60284 1047 aa9.99□□□□□ -0.81
HMGB1P33-201ENST00000563485 POTEMA6NI47 508 aa9.98□□□□□ -0.81
HMGB1P33-201ENST00000563485 POTEGQ6S5H5 508 aa9.97□□□□□ -0.81
HMGB1P33-201ENST00000563485 HOXB3P14651 431 aaPredicted RBP9.93□□□□□ -0.82
HMGB1P33-201ENST00000563485 KIF3CO14782 793 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms