RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 AEBP2Q6ZN18 517 aaPredicted RBP21.89■■□□□ 1.09
HMGB1P33-201ENST00000563485 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
HMGB1P33-201ENST00000563485 SENP3Q9H4L4 574 aaPredicted RBP18.57■□□□□ 0.56
HMGB1P33-201ENST00000563485 PHF23Q9BUL5 403 aaPredicted RBP18.52■□□□□ 0.56
HMGB1P33-201ENST00000563485 FOXD1Q16676 465 aa17.31■□□□□ 0.36
HMGB1P33-201ENST00000563485 PLPPR3Q6T4P5 718 aa16.97■□□□□ 0.31
HMGB1P33-201ENST00000563485 PPP6R1Q9UPN7 881 aa16.45■□□□□ 0.22
HMGB1P33-201ENST00000563485 ADRA2BP18089 450 aa16.41■□□□□ 0.22
HMGB1P33-201ENST00000563485 PIAS4Q8N2W9 510 aaPredicted RBP16.25■□□□□ 0.19
HMGB1P33-201ENST00000563485 MSH5O43196 834 aa16.03■□□□□ 0.16
HMGB1P33-201ENST00000563485 POTEDQ86YR6 584 aa15.13■□□□□ 0.01
HMGB1P33-201ENST00000563485 MAPK8IP2Q13387 824 aaPredicted RBP14.98□□□□□ -0.01
HMGB1P33-201ENST00000563485 SCAF1Q9H7N4 1312 aaKnown RBP14.95□□□□□ -0.02
HMGB1P33-201ENST00000563485 PPP4R3CPQ6ZMV5 832 aa14.94□□□□□ -0.02
HMGB1P33-201ENST00000563485 DMRT2Q9Y5R5 561 aa14.79□□□□□ -0.04
HMGB1P33-201ENST00000563485 CNKSR2Q8WXI2 1034 aa14.56□□□□□ -0.08
HMGB1P33-201ENST00000563485 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
HMGB1P33-201ENST00000563485 HOXD11P31277 338 aaPredicted RBP14.37□□□□□ -0.11
HMGB1P33-201ENST00000563485 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
HMGB1P33-201ENST00000563485 KCNA4P22459 653 aa14.29□□□□□ -0.12
HMGB1P33-201ENST00000563485 NPM3O75607 178 aaKnown RBP14.26□□□□□ -0.13
HMGB1P33-201ENST00000563485 DCAF8L1A6NGE4 600 aa14.19□□□□□ -0.14
HMGB1P33-201ENST00000563485 DNAJC5BQ9UF47 199 aa13.84□□□□□ -0.19
HMGB1P33-201ENST00000563485 RNF39Q9H2S5 420 aa13.72□□□□□ -0.21
HMGB1P33-201ENST00000563485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.69□□□□□ -0.22
HMGB1P33-201ENST00000563485 CACNB1Q02641 598 aaPredicted RBP13.58□□□□□ -0.24
HMGB1P33-201ENST00000563485 SLC4A2P04920 1241 aa13.54□□□□□ -0.24
HMGB1P33-201ENST00000563485 SLC4A1APQ9BWU0 796 aaKnown RBP13.54□□□□□ -0.24
HMGB1P33-201ENST00000563485 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
HMGB1P33-201ENST00000563485 U3KPZ7 1027 aaPredicted RBP13.46□□□□□ -0.25
HMGB1P33-201ENST00000563485 FOXD4L1Q9NU39 408 aa13.21□□□□□ -0.29
HMGB1P33-201ENST00000563485 SPINK5Q9NQ38 1064 aaPredicted RBP13.18□□□□□ -0.3
HMGB1P33-201ENST00000563485 MYCNP04198 464 aaPredicted RBP13.17□□□□□ -0.3
HMGB1P33-201ENST00000563485 ZBTB22O15209 634 aa13.15□□□□□ -0.3
HMGB1P33-201ENST00000563485 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.14□□□□□ -0.31
HMGB1P33-201ENST00000563485 HNRNPUL2Q1KMD3 747 aaKnown RBP13.14□□□□□ -0.31
HMGB1P33-201ENST00000563485 CAPN15O75808 1086 aa13.13□□□□□ -0.31
HMGB1P33-201ENST00000563485 SAMD1Q6SPF0 538 aaPredicted RBP13.09□□□□□ -0.31
HMGB1P33-201ENST00000563485 APLP2Q06481 763 aa13.06□□□□□ -0.32
HMGB1P33-201ENST00000563485 TRHP20396 242 aaPredicted RBP13□□□□□ -0.33
HMGB1P33-201ENST00000563485 DSG3P32926 999 aa12.97□□□□□ -0.33
HMGB1P33-201ENST00000563485 ZNF219Q9P2Y4 722 aaPredicted RBP12.96□□□□□ -0.33
HMGB1P33-201ENST00000563485 ABCB7O75027 752 aa12.87□□□□□ -0.35
HMGB1P33-201ENST00000563485 ATF5Q9Y2D1 282 aaPredicted RBP12.87□□□□□ -0.35
HMGB1P33-201ENST00000563485 EHMT2Q96KQ7 1210 aa12.86□□□□□ -0.35
HMGB1P33-201ENST00000563485 CSRNP3Q8WYN3 585 aa12.83□□□□□ -0.36
HMGB1P33-201ENST00000563485 ATXN8OSP0DMR3 200 aa12.74□□□□□ -0.37
HMGB1P33-201ENST00000563485 POLA2Q14181 598 aa12.72□□□□□ -0.37
HMGB1P33-201ENST00000563485 ZBTB12Q9Y330 459 aaPredicted RBP12.45□□□□□ -0.42
HMGB1P33-201ENST00000563485 RBM42Q9BTD8 480 aaKnown RBP12.34□□□□□ -0.43
HMGB1P33-201ENST00000563485 OSCARQ8IYS5 282 aa12.32□□□□□ -0.44
HMGB1P33-201ENST00000563485 FBLN2P98095 1184 aa12.3□□□□□ -0.44
HMGB1P33-201ENST00000563485 MKRN4PQ13434 485 aaPredicted RBP12.29□□□□□ -0.44
HMGB1P33-201ENST00000563485 AKT1S1Q96B36 256 aa12.13□□□□□ -0.47
HMGB1P33-201ENST00000563485 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
HMGB1P33-201ENST00000563485 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
HMGB1P33-201ENST00000563485 SPDYE2Q495Y8 402 aa12.11□□□□□ -0.47
HMGB1P33-201ENST00000563485 REM2Q8IYK8 340 aaPredicted RBP12.04□□□□□ -0.48
HMGB1P33-201ENST00000563485 ZNF692Q9BU19 519 aaPredicted RBP12.02□□□□□ -0.49
HMGB1P33-201ENST00000563485 SSUH2Q9Y2M2 353 aa12□□□□□ -0.49
HMGB1P33-201ENST00000563485 CHRDL2Q6WN34 429 aa11.96□□□□□ -0.49
HMGB1P33-201ENST00000563485 PITPNM1O00562 1244 aa11.92□□□□□ -0.5
HMGB1P33-201ENST00000563485 POTEHQ6S545 545 aa11.92□□□□□ -0.5
HMGB1P33-201ENST00000563485 PABPN1Q86U42 306 aaKnown RBP eCLIP11.88□□□□□ -0.51
HMGB1P33-201ENST00000563485 SPDYE4A6NLX3 237 aa11.86□□□□□ -0.51
HMGB1P33-201ENST00000563485 SPDYE1Q8NFV5 336 aaPredicted RBP11.82□□□□□ -0.52
HMGB1P33-201ENST00000563485 CLEC11AQ9Y240 323 aa11.81□□□□□ -0.52
HMGB1P33-201ENST00000563485 PIP4P2Q8N4L2 257 aa11.76□□□□□ -0.53
HMGB1P33-201ENST00000563485 FXR2P51116 673 aaKnown RBP eCLIP11.73□□□□□ -0.53
HMGB1P33-201ENST00000563485 PRR29P0C7W0 189 aa11.64□□□□□ -0.55
HMGB1P33-201ENST00000563485 FKBP8Q14318 412 aa11.62□□□□□ -0.55
HMGB1P33-201ENST00000563485 PROM2Q8N271 834 aa11.62□□□□□ -0.55
HMGB1P33-201ENST00000563485 PRKAR2AP13861 404 aaKnown RBP11.61□□□□□ -0.55
HMGB1P33-201ENST00000563485 STAG3Q9UJ98 1225 aa11.57□□□□□ -0.56
HMGB1P33-201ENST00000563485 CHADLQ6NUI6 762 aa11.56□□□□□ -0.56
HMGB1P33-201ENST00000563485 HAX1O00165 279 aa11.45□□□□□ -0.58
HMGB1P33-201ENST00000563485 CREBZFQ9NS37 354 aa11.45□□□□□ -0.58
HMGB1P33-201ENST00000563485 FARP1Q9Y4F1 1045 aaPredicted RBP11.4□□□□□ -0.58
HMGB1P33-201ENST00000563485 EVX2Q03828 476 aa11.36□□□□□ -0.59
HMGB1P33-201ENST00000563485 C19orf67A6NJJ6 358 aa11.35□□□□□ -0.59
HMGB1P33-201ENST00000563485 SP7Q8TDD2 431 aaPredicted RBP11.32□□□□□ -0.6
HMGB1P33-201ENST00000563485 MNX1P50219 401 aaPredicted RBP11.3□□□□□ -0.6
HMGB1P33-201ENST00000563485 MIER1Q8N108 512 aa11.27□□□□□ -0.61
HMGB1P33-201ENST00000563485 CD44P16070 742 aaKnown RBP11.25□□□□□ -0.61
HMGB1P33-201ENST00000563485 FBXO3Q9UK99 471 aa11.23□□□□□ -0.61
HMGB1P33-201ENST00000563485 PLCD3Q8N3E9 789 aa11.22□□□□□ -0.61
HMGB1P33-201ENST00000563485 NPM1P06748 294 aaKnown RBP eCLIP11.21□□□□□ -0.61
HMGB1P33-201ENST00000563485 PLEKHG5O94827 1062 aa11.2□□□□□ -0.62
HMGB1P33-201ENST00000563485 ZRANB1Q9UGI0 708 aa11.15□□□□□ -0.62
HMGB1P33-201ENST00000563485 VASPP50552 380 aaPredicted RBP11.12□□□□□ -0.63
HMGB1P33-201ENST00000563485 GABBR2O75899 941 aa11.1□□□□□ -0.63
HMGB1P33-201ENST00000563485 PAK3O75914 559 aaPredicted RBP11.1□□□□□ -0.63
HMGB1P33-201ENST00000563485 ZNF579Q8NAF0 562 aaKnown RBP11.09□□□□□ -0.63
HMGB1P33-201ENST00000563485 ZBTB47Q9UFB7 747 aaPredicted RBP11.08□□□□□ -0.64
HMGB1P33-201ENST00000563485 RASEFQ8IZ41 740 aa11.06□□□□□ -0.64
HMGB1P33-201ENST00000563485 TSPYL2Q9H2G4 693 aaPredicted RBP11.06□□□□□ -0.64
HMGB1P33-201ENST00000563485 PHF12Q96QT6 1004 aa11.04□□□□□ -0.64
HMGB1P33-201ENST00000563485 NUBP1P53384 320 aa11.02□□□□□ -0.65
HMGB1P33-201ENST00000563485 KLHL34Q8N239 644 aa10.99□□□□□ -0.65
HMGB1P33-201ENST00000563485 CCDC61Q9Y6R9 512 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms