RNA–Protein interactions for RNA: ENST00000563416.3

LINC00254-201, long intergenic non-protein coding RNA 254, humanhuman

TSL 3 BASIC

Gene LINC00254, Length 662 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00254-201ENST00000563416 AMER1Q5JTC6 1135 aaPredicted RBP13.63□□□□□ -0.23
LINC00254-201ENST00000563416 TRIM41Q8WV44 630 aa13.61□□□□□ -0.23
LINC00254-201ENST00000563416 CCDC61Q9Y6R9 512 aa13.6□□□□□ -0.23
LINC00254-201ENST00000563416 ZNF579Q8NAF0 562 aaKnown RBP13.58□□□□□ -0.24
LINC00254-201ENST00000563416 EVX2Q03828 476 aa13.56□□□□□ -0.24
LINC00254-201ENST00000563416 CLCN6P51797 869 aa13.54□□□□□ -0.24
LINC00254-201ENST00000563416 PYGBP11216 843 aa13.52□□□□□ -0.25
LINC00254-201ENST00000563416 PKD2Q13563 968 aa13.51□□□□□ -0.25
LINC00254-201ENST00000563416 ECM2O94769 699 aaPredicted RBP13.5□□□□□ -0.25
LINC00254-201ENST00000563416 CHRM1P11229 460 aaPredicted RBP13.5□□□□□ -0.25
LINC00254-201ENST00000563416 PHF12Q96QT6 1004 aa13.5□□□□□ -0.25
LINC00254-201ENST00000563416 KIF12Q96FN5 646 aa13.47□□□□□ -0.25
LINC00254-201ENST00000563416 RTN4Q9NQC3 1192 aaKnown RBP13.47□□□□□ -0.25
LINC00254-201ENST00000563416 SP7Q8TDD2 431 aaPredicted RBP13.46□□□□□ -0.25
LINC00254-201ENST00000563416 SGIP1Q9BQI5 828 aa13.45□□□□□ -0.26
LINC00254-201ENST00000563416 MAP3K13O43283 966 aa13.43□□□□□ -0.26
LINC00254-201ENST00000563416 PCDHB13Q9Y5F0 798 aa13.43□□□□□ -0.26
LINC00254-201ENST00000563416 ZNF467Q7Z7K2 595 aaPredicted RBP13.41□□□□□ -0.26
LINC00254-201ENST00000563416 GABBR2O75899 941 aa13.37□□□□□ -0.27
LINC00254-201ENST00000563416 MS4A3Q96HJ5 214 aa13.37□□□□□ -0.27
LINC00254-201ENST00000563416 TAOK2Q9UL54 1235 aa13.35□□□□□ -0.27
LINC00254-201ENST00000563416 RIOK3O14730 519 aaKnown RBP13.33□□□□□ -0.28
LINC00254-201ENST00000563416 GALR2O43603 387 aaPredicted RBP13.33□□□□□ -0.28
LINC00254-201ENST00000563416 IFNL1Q8IU54 200 aa13.33□□□□□ -0.28
LINC00254-201ENST00000563416 RGL2O15211 777 aa13.31□□□□□ -0.28
LINC00254-201ENST00000563416 PCDHB8Q9UN66 801 aa13.31□□□□□ -0.28
LINC00254-201ENST00000563416 RNF25Q96BH1 459 aaPredicted RBP13.29□□□□□ -0.28
LINC00254-201ENST00000563416 VGFO15240 615 aaPredicted RBP13.27□□□□□ -0.29
LINC00254-201ENST00000563416 PDAP1Q13442 181 aaKnown RBP13.26□□□□□ -0.29
LINC00254-201ENST00000563416 DCAF8L2P0C7V8 631 aa13.24□□□□□ -0.29
LINC00254-201ENST00000563416 DCBLD2Q96PD2 775 aa13.24□□□□□ -0.29
LINC00254-201ENST00000563416 TIE1P35590 1138 aa13.23□□□□□ -0.29
LINC00254-201ENST00000563416 PSEN1P49768 467 aa13.22□□□□□ -0.29
LINC00254-201ENST00000563416 TRPC6Q9Y210 931 aa13.19□□□□□ -0.3
LINC00254-201ENST00000563416 TMEM106CQ9BVX2 250 aa13.17□□□□□ -0.3
LINC00254-201ENST00000563416 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.16□□□□□ -0.3
LINC00254-201ENST00000563416 ZFP91Q96JP5 570 aaPredicted RBP13.16□□□□□ -0.3
LINC00254-201ENST00000563416 BMP2KQ9NSY1 1161 aaPredicted RBP13.15□□□□□ -0.3
LINC00254-201ENST00000563416 TTLL13PA6NNM8 815 aa13.14□□□□□ -0.31
LINC00254-201ENST00000563416 STK25O00506 426 aa13.13□□□□□ -0.31
LINC00254-201ENST00000563416 ASTLQ6HA08 431 aaPredicted RBP13.13□□□□□ -0.31
LINC00254-201ENST00000563416 ATMINO43313 823 aaPredicted RBP13.11□□□□□ -0.31
LINC00254-201ENST00000563416 GOLGA2Q08379 1002 aa13.11□□□□□ -0.31
LINC00254-201ENST00000563416 CHGAP10645 457 aaKnown RBP13.09□□□□□ -0.31
LINC00254-201ENST00000563416 BCL11BQ9C0K0 894 aaPredicted RBP13.09□□□□□ -0.31
LINC00254-201ENST00000563416 STK24Q9Y6E0 443 aa13.09□□□□□ -0.31
LINC00254-201ENST00000563416 ATN1P54259 1190 aaPredicted RBP13.08□□□□□ -0.32
LINC00254-201ENST00000563416 HS6ST3Q8IZP7 471 aa13.07□□□□□ -0.32
LINC00254-201ENST00000563416 TRIM35Q9UPQ4 493 aa13.07□□□□□ -0.32
LINC00254-201ENST00000563416 CABP2Q9NPB3 220 aa13.05□□□□□ -0.32
LINC00254-201ENST00000563416 POTEIP0CG38 1075 aa13.03□□□□□ -0.32
LINC00254-201ENST00000563416 MKRN3Q13064 507 aaKnown RBP13.03□□□□□ -0.32
LINC00254-201ENST00000563416 SLC39A7Q92504 469 aa13□□□□□ -0.33
LINC00254-201ENST00000563416 IER5LQ5T953 404 aa12.99□□□□□ -0.33
LINC00254-201ENST00000563416 PELP1Q8IZL8 1130 aaKnown RBP12.97□□□□□ -0.33
LINC00254-201ENST00000563416 C7P10643 843 aa12.96□□□□□ -0.33
LINC00254-201ENST00000563416 EFCAB3Q8N7B9 438 aa12.96□□□□□ -0.33
LINC00254-201ENST00000563416 DNAJC5Q9H3Z4 198 aa12.95□□□□□ -0.34
LINC00254-201ENST00000563416 SOX12O15370 315 aa12.94□□□□□ -0.34
LINC00254-201ENST00000563416 METRNQ9UJH8 293 aa12.92□□□□□ -0.34
LINC00254-201ENST00000563416 SEC24BO95487 1268 aa12.91□□□□□ -0.34
LINC00254-201ENST00000563416 BBXQ8WY36 941 aaPredicted RBP12.91□□□□□ -0.34
LINC00254-201ENST00000563416 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.9□□□□□ -0.34
LINC00254-201ENST00000563416 PLCG2P16885 1265 aa12.88□□□□□ -0.35
LINC00254-201ENST00000563416 RYDENQ9NUL5 291 aaKnown RBP12.88□□□□□ -0.35
LINC00254-201ENST00000563416 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.88□□□□□ -0.35
LINC00254-201ENST00000563416 NLRP6P59044 892 aa12.87□□□□□ -0.35
LINC00254-201ENST00000563416 OCEL1Q9H607 264 aa12.87□□□□□ -0.35
LINC00254-201ENST00000563416 IRX5P78411 483 aaPredicted RBP12.86□□□□□ -0.35
LINC00254-201ENST00000563416 PHF8Q9UPP1 1060 aa12.84□□□□□ -0.35
LINC00254-201ENST00000563416 MFRPQ9BY79 579 aa12.83□□□□□ -0.36
LINC00254-201ENST00000563416 NKX1-1Q15270 411 aaPredicted RBP12.82□□□□□ -0.36
LINC00254-201ENST00000563416 ILDR1Q86SU0 546 aaPredicted RBP12.81□□□□□ -0.36
LINC00254-201ENST00000563416 COLQQ9Y215 455 aaPredicted RBP12.8□□□□□ -0.36
LINC00254-201ENST00000563416 FBXO22Q8NEZ5 403 aa12.79□□□□□ -0.36
LINC00254-201ENST00000563416 PDCD7Q8N8D1 485 aaKnown RBP12.78□□□□□ -0.36
LINC00254-201ENST00000563416 POTEFA5A3E0 1075 aa12.76□□□□□ -0.37
LINC00254-201ENST00000563416 SPRYD3Q8NCJ5 442 aa12.75□□□□□ -0.37
LINC00254-201ENST00000563416 G3V3G9 751 aa12.74□□□□□ -0.37
LINC00254-201ENST00000563416 L3MBTL3Q96JM7 780 aaPredicted RBP12.74□□□□□ -0.37
LINC00254-201ENST00000563416 MS4A4AQ96JQ5 239 aa12.74□□□□□ -0.37
LINC00254-201ENST00000563416 GTPBP6O43824 516 aaPredicted RBP12.72□□□□□ -0.37
LINC00254-201ENST00000563416 PAXIP1Q6ZW49 1069 aaPredicted RBP12.71□□□□□ -0.37
LINC00254-201ENST00000563416 CFAP44Q96MT7 982 aa12.7□□□□□ -0.38
LINC00254-201ENST00000563416 DPY19L2Q6NUT2 758 aa12.69□□□□□ -0.38
LINC00254-201ENST00000563416 BOLA1Q9Y3E2 137 aa12.67□□□□□ -0.38
LINC00254-201ENST00000563416 LHX8Q68G74 356 aa12.64□□□□□ -0.39
LINC00254-201ENST00000563416 MAMSTRQ6ZN01 415 aa12.64□□□□□ -0.39
LINC00254-201ENST00000563416 POTEB2H3BUK9 544 aa12.62□□□□□ -0.39
LINC00254-201ENST00000563416 PPP1R37O75864 691 aa12.62□□□□□ -0.39
LINC00254-201ENST00000563416 PLCB2Q00722 1185 aa12.61□□□□□ -0.39
LINC00254-201ENST00000563416 C3orf67Q6ZVT6 689 aa12.61□□□□□ -0.39
LINC00254-201ENST00000563416 MICALL2Q8IY33 904 aa12.61□□□□□ -0.39
LINC00254-201ENST00000563416 SCUBE2Q9NQ36 999 aa12.61□□□□□ -0.39
LINC00254-201ENST00000563416 TMEM121BQ9BXQ6 578 aaPredicted RBP12.59□□□□□ -0.39
LINC00254-201ENST00000563416 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.57□□□□□ -0.4
LINC00254-201ENST00000563416 POTEJP0CG39 1038 aa12.55□□□□□ -0.4
LINC00254-201ENST00000563416 OTUD5Q96G74 571 aa12.46□□□□□ -0.41
LINC00254-201ENST00000563416 SLAIN1Q8ND83 568 aa12.45□□□□□ -0.42
LINC00254-201ENST00000563416 TMC2Q8TDI7 906 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms