RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 GSE1Q14687 1217 aa16.94■□□□□ 0.3
SMG1-204ENST00000561940 PHF12Q96QT6 1004 aa16.94■□□□□ 0.3
SMG1-204ENST00000561940 CCDC61Q9Y6R9 512 aa16.93■□□□□ 0.3
SMG1-204ENST00000561940 PYGBP11216 843 aa16.88■□□□□ 0.29
SMG1-204ENST00000561940 ZNF579Q8NAF0 562 aaKnown RBP16.87■□□□□ 0.29
SMG1-204ENST00000561940 SP7Q8TDD2 431 aaPredicted RBP16.85■□□□□ 0.29
SMG1-204ENST00000561940 PKD2Q13563 968 aa16.79■□□□□ 0.28
SMG1-204ENST00000561940 KIF12Q96FN5 646 aa16.79■□□□□ 0.28
SMG1-204ENST00000561940 MAP3K13O43283 966 aa16.78■□□□□ 0.28
SMG1-204ENST00000561940 GABBR2O75899 941 aa16.76■□□□□ 0.27
SMG1-204ENST00000561940 ECM2O94769 699 aaPredicted RBP16.72■□□□□ 0.27
SMG1-204ENST00000561940 GALR2O43603 387 aaPredicted RBP16.71■□□□□ 0.27
SMG1-204ENST00000561940 MS4A3Q96HJ5 214 aa16.71■□□□□ 0.27
SMG1-204ENST00000561940 RTN4Q9NQC3 1192 aaKnown RBP16.71■□□□□ 0.27
SMG1-204ENST00000561940 PCDHB13Q9Y5F0 798 aa16.7■□□□□ 0.26
SMG1-204ENST00000561940 CHRM1P11229 460 aaPredicted RBP16.67■□□□□ 0.26
SMG1-204ENST00000561940 TRIM41Q8WV44 630 aa16.66■□□□□ 0.26
SMG1-204ENST00000561940 PCDHB8Q9UN66 801 aa16.66■□□□□ 0.26
SMG1-204ENST00000561940 AMER1Q5JTC6 1135 aaPredicted RBP16.65■□□□□ 0.26
SMG1-204ENST00000561940 IFNL1Q8IU54 200 aa16.64■□□□□ 0.25
SMG1-204ENST00000561940 CLCN6P51797 869 aa16.6■□□□□ 0.25
SMG1-204ENST00000561940 TRPC6Q9Y210 931 aa16.6■□□□□ 0.25
SMG1-204ENST00000561940 RGL2O15211 777 aa16.58■□□□□ 0.24
SMG1-204ENST00000561940 SGIP1Q9BQI5 828 aa16.58■□□□□ 0.24
SMG1-204ENST00000561940 RNF25Q96BH1 459 aaPredicted RBP16.57■□□□□ 0.24
SMG1-204ENST00000561940 ZNF467Q7Z7K2 595 aaPredicted RBP16.54■□□□□ 0.24
SMG1-204ENST00000561940 RIOK3O14730 519 aaKnown RBP16.49■□□□□ 0.23
SMG1-204ENST00000561940 DCBLD2Q96PD2 775 aa16.49■□□□□ 0.23
SMG1-204ENST00000561940 DCAF8L2P0C7V8 631 aa16.44■□□□□ 0.22
SMG1-204ENST00000561940 PSEN1P49768 467 aa16.43■□□□□ 0.22
SMG1-204ENST00000561940 BMP2KQ9NSY1 1161 aaPredicted RBP16.43■□□□□ 0.22
SMG1-204ENST00000561940 POTEIP0CG38 1075 aa16.42■□□□□ 0.22
SMG1-204ENST00000561940 TMEM106CQ9BVX2 250 aa16.42■□□□□ 0.22
SMG1-204ENST00000561940 PDAP1Q13442 181 aaKnown RBP16.4■□□□□ 0.22
SMG1-204ENST00000561940 TIE1P35590 1138 aa16.39■□□□□ 0.21
SMG1-204ENST00000561940 TTLL13PA6NNM8 815 aa16.38■□□□□ 0.21
SMG1-204ENST00000561940 VGFO15240 615 aaPredicted RBP16.38■□□□□ 0.21
SMG1-204ENST00000561940 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.37■□□□□ 0.21
SMG1-204ENST00000561940 ATMINO43313 823 aaPredicted RBP16.37■□□□□ 0.21
SMG1-204ENST00000561940 ZFP91Q96JP5 570 aaPredicted RBP16.37■□□□□ 0.21
SMG1-204ENST00000561940 ATN1P54259 1190 aaPredicted RBP16.36■□□□□ 0.21
SMG1-204ENST00000561940 ASTLQ6HA08 431 aaPredicted RBP16.33■□□□□ 0.2
SMG1-204ENST00000561940 PELP1Q8IZL8 1130 aaKnown RBP16.33■□□□□ 0.2
SMG1-204ENST00000561940 TAOK2Q9UL54 1235 aa16.3■□□□□ 0.2
SMG1-204ENST00000561940 TRIM35Q9UPQ4 493 aa16.3■□□□□ 0.2
SMG1-204ENST00000561940 STK25O00506 426 aa16.28■□□□□ 0.2
SMG1-204ENST00000561940 CHGAP10645 457 aaKnown RBP16.26■□□□□ 0.19
SMG1-204ENST00000561940 BCL11BQ9C0K0 894 aaPredicted RBP16.26■□□□□ 0.19
SMG1-204ENST00000561940 CABP2Q9NPB3 220 aa16.26■□□□□ 0.19
SMG1-204ENST00000561940 STK24Q9Y6E0 443 aa16.26■□□□□ 0.19
SMG1-204ENST00000561940 GOLGA2Q08379 1002 aa16.21■□□□□ 0.19
SMG1-204ENST00000561940 MKRN3Q13064 507 aaKnown RBP16.16■□□□□ 0.18
SMG1-204ENST00000561940 EFCAB3Q8N7B9 438 aa16.16■□□□□ 0.18
SMG1-204ENST00000561940 HS6ST3Q8IZP7 471 aa16.13■□□□□ 0.17
SMG1-204ENST00000561940 SLC39A7Q92504 469 aa16.13■□□□□ 0.17
SMG1-204ENST00000561940 METRNQ9UJH8 293 aa16.12■□□□□ 0.17
SMG1-204ENST00000561940 C7P10643 843 aa16.09■□□□□ 0.17
SMG1-204ENST00000561940 SEC24BO95487 1268 aa16.07■□□□□ 0.16
SMG1-204ENST00000561940 COLQQ9Y215 455 aaPredicted RBP16.06■□□□□ 0.16
SMG1-204ENST00000561940 IER5LQ5T953 404 aa16.05■□□□□ 0.16
SMG1-204ENST00000561940 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.05■□□□□ 0.161e-10■■□□□ 14.1
SMG1-204ENST00000561940 POTEFA5A3E0 1075 aa16.03■□□□□ 0.16
SMG1-204ENST00000561940 IRX5P78411 483 aaPredicted RBP16.02■□□□□ 0.16
SMG1-204ENST00000561940 PHF8Q9UPP1 1060 aa16.02■□□□□ 0.16
SMG1-204ENST00000561940 PLCG2P16885 1265 aa16■□□□□ 0.15
SMG1-204ENST00000561940 SOX12O15370 315 aa15.98■□□□□ 0.15
SMG1-204ENST00000561940 OCEL1Q9H607 264 aa15.98■□□□□ 0.15
SMG1-204ENST00000561940 NKX1-1Q15270 411 aaPredicted RBP15.97■□□□□ 0.15
SMG1-204ENST00000561940 MFRPQ9BY79 579 aa15.96■□□□□ 0.15
SMG1-204ENST00000561940 SLC24A1O60721 1099 aa15.95■□□□□ 0.14
SMG1-204ENST00000561940 DPY19L2Q6NUT2 758 aa15.95■□□□□ 0.14
SMG1-204ENST00000561940 POTEB2H3BUK9 544 aa15.93■□□□□ 0.14
SMG1-204ENST00000561940 PDCD7Q8N8D1 485 aaKnown RBP15.92■□□□□ 0.14
SMG1-204ENST00000561940 NLRP6P59044 892 aa15.91■□□□□ 0.14
SMG1-204ENST00000561940 BBXQ8WY36 941 aaPredicted RBP15.9■□□□□ 0.14
SMG1-204ENST00000561940 MS4A4AQ96JQ5 239 aa15.9■□□□□ 0.14
SMG1-204ENST00000561940 FBXO22Q8NEZ5 403 aa15.89■□□□□ 0.13
SMG1-204ENST00000561940 DNAJC5Q9H3Z4 198 aa15.89■□□□□ 0.13
SMG1-204ENST00000561940 ILDR1Q86SU0 546 aaPredicted RBP15.88■□□□□ 0.13
SMG1-204ENST00000561940 LHX8Q68G74 356 aa15.84■□□□□ 0.13
SMG1-204ENST00000561940 POTEJP0CG39 1038 aa15.83■□□□□ 0.12
SMG1-204ENST00000561940 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.81■□□□□ 0.12
SMG1-204ENST00000561940 GTPBP6O43824 516 aaPredicted RBP15.8■□□□□ 0.12
SMG1-204ENST00000561940 PPP1R37O75864 691 aa15.8■□□□□ 0.12
SMG1-204ENST00000561940 CFAP44Q96MT7 982 aa15.78■□□□□ 0.12
SMG1-204ENST00000561940 PAXIP1Q6ZW49 1069 aaPredicted RBP15.76■□□□□ 0.11
SMG1-204ENST00000561940 L3MBTL3Q96JM7 780 aaPredicted RBP15.75■□□□□ 0.11
SMG1-204ENST00000561940 G3V3G9 751 aa15.74■□□□□ 0.11
SMG1-204ENST00000561940 BOLA1Q9Y3E2 137 aa15.74■□□□□ 0.11
SMG1-204ENST00000561940 SPRYD3Q8NCJ5 442 aa15.73■□□□□ 0.11
SMG1-204ENST00000561940 RYDENQ9NUL5 291 aaKnown RBP15.71■□□□□ 0.11
SMG1-204ENST00000561940 MICALL2Q8IY33 904 aa15.68■□□□□ 0.1
SMG1-204ENST00000561940 OTUD5Q96G74 571 aa15.65■□□□□ 0.1
SMG1-204ENST00000561940 C3orf67Q6ZVT6 689 aa15.64■□□□□ 0.09
SMG1-204ENST00000561940 SCUBE2Q9NQ36 999 aa15.64■□□□□ 0.09
SMG1-204ENST00000561940 MAMSTRQ6ZN01 415 aa15.62■□□□□ 0.09
SMG1-204ENST00000561940 TMEM121BQ9BXQ6 578 aaPredicted RBP15.62■□□□□ 0.09
SMG1-204ENST00000561940 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.61■□□□□ 0.09
SMG1-204ENST00000561940 SLAIN1Q8ND83 568 aa15.55■□□□□ 0.08
SMG1-204ENST00000561940 PLCB2Q00722 1185 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms