RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 CDAN1Q8IWY9 1227 aa8.39□□□□□ -1.07
SPG11-225ENST00000561391 PELP1Q8IZL8 1130 aaKnown RBP8.37□□□□□ -1.07
SPG11-225ENST00000561391 METRNQ9UJH8 293 aa8.37□□□□□ -1.07
SPG11-225ENST00000561391 POTEJP0CG39 1038 aa8.35□□□□□ -1.07
SPG11-225ENST00000561391 SCUBE2Q9NQ36 999 aa8.35□□□□□ -1.07
SPG11-225ENST00000561391 MS4A3Q96HJ5 214 aa8.31□□□□□ -1.08
SPG11-225ENST00000561391 C7P10643 843 aa8.3□□□□□ -1.08
SPG11-225ENST00000561391 MNX1P50219 401 aaPredicted RBP8.3□□□□□ -1.08
SPG11-225ENST00000561391 SLC39A7Q92504 469 aa8.3□□□□□ -1.08
SPG11-225ENST00000561391 TSPYL2Q9H2G4 693 aaPredicted RBP8.28□□□□□ -1.08
SPG11-225ENST00000561391 ASTLQ6HA08 431 aaPredicted RBP8.27□□□□□ -1.09
SPG11-225ENST00000561391 ATMINO43313 823 aaPredicted RBP8.25□□□□□ -1.09
SPG11-225ENST00000561391 MMRN1Q13201 1228 aa8.25□□□□□ -1.09
SPG11-225ENST00000561391 PLEKHG5O94827 1062 aa8.21□□□□□ -1.1
SPG11-225ENST00000561391 ATN1P54259 1190 aaPredicted RBP8.18□□□□□ -1.1
SPG11-225ENST00000561391 SPNS2Q8IVW8 549 aa8.18□□□□□ -1.1
SPG11-225ENST00000561391 CCDC61Q9Y6R9 512 aa8.18□□□□□ -1.1
SPG11-225ENST00000561391 KIF12Q96FN5 646 aa8.15□□□□□ -1.1
SPG11-225ENST00000561391 MIER1Q8N108 512 aa8.13□□□□□ -1.11
SPG11-225ENST00000561391 PROM2Q8N271 834 aa8.13□□□□□ -1.11
SPG11-225ENST00000561391 BMP2KQ9NSY1 1161 aaPredicted RBP8.13□□□□□ -1.11
SPG11-225ENST00000561391 MAP3K13O43283 966 aa8.11□□□□□ -1.11
SPG11-225ENST00000561391 TIE1P35590 1138 aa8.11□□□□□ -1.11
SPG11-225ENST00000561391 ABCC9O60706 1549 aa8.1□□□□□ -1.11
SPG11-225ENST00000561391 SEC24BO95487 1268 aa8.1□□□□□ -1.11
SPG11-225ENST00000561391 TRPC6Q9Y210 931 aa8.1□□□□□ -1.11
SPG11-225ENST00000561391 ST18O60284 1047 aa8.08□□□□□ -1.12
SPG11-225ENST00000561391 RASEFQ8IZ41 740 aa8.08□□□□□ -1.12
SPG11-225ENST00000561391 PLCD3Q8N3E9 789 aa8.07□□□□□ -1.12
SPG11-225ENST00000561391 POTEFA5A3E0 1075 aa8.06□□□□□ -1.12
SPG11-225ENST00000561391 TTLL13PA6NNM8 815 aa8.05□□□□□ -1.12
SPG11-225ENST00000561391 NISCHQ9Y2I1 1504 aa8.04□□□□□ -1.12
SPG11-225ENST00000561391 TRIM35Q9UPQ4 493 aa8.03□□□□□ -1.12
SPG11-225ENST00000561391 PCDHB13Q9Y5F0 798 aa8.03□□□□□ -1.12
SPG11-225ENST00000561391 ZBTB47Q9UFB7 747 aaPredicted RBP8.02□□□□□ -1.13
SPG11-225ENST00000561391 COLQQ9Y215 455 aaPredicted RBP8.02□□□□□ -1.13
SPG11-225ENST00000561391 IER5LQ5T953 404 aa8□□□□□ -1.13
SPG11-225ENST00000561391 SLAIN1Q8ND83 568 aa7.99□□□□□ -1.13
SPG11-225ENST00000561391 SGIP1Q9BQI5 828 aa7.99□□□□□ -1.13
SPG11-225ENST00000561391 FAM212AQ96EL1 285 aa7.97□□□□□ -1.13
SPG11-225ENST00000561391 PLCG2P16885 1265 aa7.96□□□□□ -1.14
SPG11-225ENST00000561391 TMEM106CQ9BVX2 250 aa7.95□□□□□ -1.14
SPG11-225ENST00000561391 IFNL1Q8IU54 200 aa7.94□□□□□ -1.14
SPG11-225ENST00000561391 TMEM121BQ9BXQ6 578 aaPredicted RBP7.94□□□□□ -1.14
SPG11-225ENST00000561391 NUBP1P53384 320 aa7.92□□□□□ -1.14
SPG11-225ENST00000561391 MARVELD3Q96A59 401 aa7.9□□□□□ -1.14
SPG11-225ENST00000561391 DNAJC5Q9H3Z4 198 aa7.9□□□□□ -1.14
SPG11-225ENST00000561391 IRX5P78411 483 aaPredicted RBP7.85□□□□□ -1.15
SPG11-225ENST00000561391 DCAF8Q5TAQ9 597 aa7.85□□□□□ -1.15
SPG11-225ENST00000561391 PYGBP11216 843 aa7.84□□□□□ -1.15
SPG11-225ENST00000561391 SNPHO15079 494 aa7.83□□□□□ -1.16
SPG11-225ENST00000561391 OCEL1Q9H607 264 aa7.83□□□□□ -1.16
SPG11-225ENST00000561391 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.83□□□□□ -1.16
SPG11-225ENST00000561391 FKBP8Q14318 412 aa7.82□□□□□ -1.16
SPG11-225ENST00000561391 GOLGA2Q08379 1002 aa7.79□□□□□ -1.16
SPG11-225ENST00000561391 PCDHB8Q9UN66 801 aa7.79□□□□□ -1.16
SPG11-225ENST00000561391 EMP3P54852 163 aa7.78□□□□□ -1.16
SPG11-225ENST00000561391 C3orf67Q6ZVT6 689 aa7.78□□□□□ -1.16
SPG11-225ENST00000561391 KRTAP3-3Q9BYR6 98 aa7.78□□□□□ -1.16
SPG11-225ENST00000561391 KRTAP3-2Q9BYR7 98 aa7.78□□□□□ -1.16
SPG11-225ENST00000561391 MKRN3Q13064 507 aaKnown RBP7.75□□□□□ -1.17
SPG11-225ENST00000561391 FBXO3Q9UK99 471 aa7.75□□□□□ -1.17
SPG11-225ENST00000561391 ZNF467Q7Z7K2 595 aaPredicted RBP7.73□□□□□ -1.17
SPG11-225ENST00000561391 KLHL34Q8N239 644 aa7.73□□□□□ -1.17
SPG11-225ENST00000561391 HS3ST6Q96QI5 342 aa7.73□□□□□ -1.17
SPG11-225ENST00000561391 FAM205CA6NFA0 338 aa7.71□□□□□ -1.18
SPG11-225ENST00000561391 GSE1Q14687 1217 aa7.71□□□□□ -1.18
SPG11-225ENST00000561391 L3MBTL3Q96JM7 780 aaPredicted RBP7.71□□□□□ -1.18
SPG11-225ENST00000561391 RNF166Q96A37 237 aaPredicted RBP7.7□□□□□ -1.18
SPG11-225ENST00000561391 PDCD7Q8N8D1 485 aaKnown RBP7.69□□□□□ -1.18
SPG11-225ENST00000561391 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.69□□□□□ -1.18
SPG11-225ENST00000561391 POTEB3A0JP26 581 aa7.67□□□□□ -1.18
SPG11-225ENST00000561391 POTEBQ6S5H4 581 aa7.67□□□□□ -1.18
SPG11-225ENST00000561391 G3V3G9 751 aa7.66□□□□□ -1.18
SPG11-225ENST00000561391 PSEN1P49768 467 aa7.65□□□□□ -1.18
SPG11-225ENST00000561391 VASPP50552 380 aaPredicted RBP7.63□□□□□ -1.19
SPG11-225ENST00000561391 PDAP1Q13442 181 aaKnown RBP7.61□□□□□ -1.19
SPG11-225ENST00000561391 CHRM1P11229 460 aaPredicted RBP7.59□□□□□ -1.19
SPG11-225ENST00000561391 CABP2Q9NPB3 220 aa7.59□□□□□ -1.19
SPG11-225ENST00000561391 MYT1LQ9UL68 1186 aa7.58□□□□□ -1.2
SPG11-225ENST00000561391 ZNF710Q8N1W2 664 aa7.57□□□□□ -1.2
SPG11-225ENST00000561391 DPY19L2Q6NUT2 758 aa7.56□□□□□ -1.2
SPG11-225ENST00000561391 CIZ1Q9ULV3 898 aaPredicted RBP7.56□□□□□ -1.2
SPG11-225ENST00000561391 BOLA1Q9Y3E2 137 aa7.56□□□□□ -1.2
SPG11-225ENST00000561391 DOK7Q18PE1 504 aa7.52□□□□□ -1.21
SPG11-225ENST00000561391 ILDR1Q86SU0 546 aaPredicted RBP7.52□□□□□ -1.21
SPG11-225ENST00000561391 ERBB3P21860 1342 aa7.52□□□□□ -1.21
SPG11-225ENST00000561391 RIMBP2O15034 1052 aa7.51□□□□□ -1.21
SPG11-225ENST00000561391 SPOCK2Q92563 424 aa7.51□□□□□ -1.21
SPG11-225ENST00000561391 HOXB3P14651 431 aaPredicted RBP7.5□□□□□ -1.21
SPG11-225ENST00000561391 HOXB1P14653 301 aaPredicted RBP7.5□□□□□ -1.21
SPG11-225ENST00000561391 VARS2Q5ST30 1063 aaKnown RBP7.46□□□□□ -1.22
SPG11-225ENST00000561391 EFCAB3Q8N7B9 438 aa7.44□□□□□ -1.22
SPG11-225ENST00000561391 IFNLR1Q8IU57 520 aaPredicted RBP7.43□□□□□ -1.22
SPG11-225ENST00000561391 PTGER2P43116 358 aa7.42□□□□□ -1.22
SPG11-225ENST00000561391 MICALL2Q8IY33 904 aa7.4□□□□□ -1.22
SPG11-225ENST00000561391 TRIM41Q8WV44 630 aa7.4□□□□□ -1.22
SPG11-225ENST00000561391 PLA2G2EQ9NZK7 142 aa7.4□□□□□ -1.22
SPG11-225ENST00000561391 ZSWIM6Q9HCJ5 1215 aa7.39□□□□□ -1.23
SPG11-225ENST00000561391 ZNF687Q8N1G0 1237 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms