RNA–Protein interactions for RNA: ENST00000561071.5

MARK3-223, Transcript of microtubule affinity regulating kinase 3, human

TSL 3

Gene MARK3, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-223	ENST00000561071	TSPYL2	Q9H2G4	693 aa	Predicted RBP	15.1	■□□□□ 0.01
MARK3-223	ENST00000561071	RGL2	O15211	777 aa		15.08	■□□□□ 0
MARK3-223	ENST00000561071	DCAF8L2	P0C7V8	631 aa		15.07	■□□□□ 0
MARK3-223	ENST00000561071	TRIM41	Q8WV44	630 aa		15.04	■□□□□ -0
MARK3-223	ENST00000561071	PYGB	P11216	843 aa		15	□□□□□ -0.01
MARK3-223	ENST00000561071	RNF25	Q96BH1	459 aa	Predicted RBP	14.98	□□□□□ -0.01
MARK3-223	ENST00000561071	CD44	P16070	742 aa	Known RBP	14.95	□□□□□ -0.02
MARK3-223	ENST00000561071	CCDC61	Q9Y6R9	512 aa		14.95	□□□□□ -0.02
MARK3-223	ENST00000561071	PAK3	O75914	559 aa	Predicted RBP	14.94	□□□□□ -0.02
MARK3-223	ENST00000561071	CHRM1	P11229	460 aa	Predicted RBP	14.93	□□□□□ -0.02
MARK3-223	ENST00000561071	ZRANB1	Q9UGI0	708 aa		14.9	□□□□□ -0.02
MARK3-223	ENST00000561071	C19orf67	A6NJJ6	358 aa		14.88	□□□□□ -0.03
MARK3-223	ENST00000561071	RIOK3	O14730	519 aa	Known RBP	14.86	□□□□□ -0.03
MARK3-223	ENST00000561071	PHF12	Q96QT6	1004 aa		14.81	□□□□□ -0.04
MARK3-223	ENST00000561071	HAX1	O00165	279 aa		14.8	□□□□□ -0.04
MARK3-223	ENST00000561071	CHGA	P10645	457 aa	Known RBP	14.79	□□□□□ -0.04
MARK3-223	ENST00000561071	KIF12	Q96FN5	646 aa		14.79	□□□□□ -0.04
MARK3-223	ENST00000561071	MAP3K13	O43283	966 aa		14.78	□□□□□ -0.04
MARK3-223	ENST00000561071	PCDHB8	Q9UN66	801 aa		14.77	□□□□□ -0.05
MARK3-223	ENST00000561071	PCDHB13	Q9Y5F0	798 aa		14.77	□□□□□ -0.05
MARK3-223	ENST00000561071	EVX2	Q03828	476 aa		14.76	□□□□□ -0.05
MARK3-223	ENST00000561071	POTEH	Q6S545	545 aa		14.76	□□□□□ -0.05
MARK3-223	ENST00000561071	VGF	O15240	615 aa	Predicted RBP	14.75	□□□□□ -0.05
MARK3-223	ENST00000561071	ZNF467	Q7Z7K2	595 aa	Predicted RBP	14.74	□□□□□ -0.05
MARK3-223	ENST00000561071	ZNF579	Q8NAF0	562 aa	Known RBP	14.74	□□□□□ -0.05
MARK3-223	ENST00000561071	RB1CC1	Q8TDY2	1594 aa		14.73	□□□□□ -0.05
MARK3-223	ENST00000561071	IFNL1	Q8IU54	200 aa		14.72	□□□□□ -0.05
MARK3-223	ENST00000561071	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	14.71	□□□□□ -0.05
MARK3-223	ENST00000561071	ZFP91	Q96JP5	570 aa	Predicted RBP	14.71	□□□□□ -0.05
MARK3-223	ENST00000561071	TAOK2	Q9UL54	1235 aa		14.71	□□□□□ -0.05
MARK3-223	ENST00000561071	HS6ST3	Q8IZP7	471 aa		14.7	□□□□□ -0.06
MARK3-223	ENST00000561071	STK25	O00506	426 aa		14.68	□□□□□ -0.06
MARK3-223	ENST00000561071	SGIP1	Q9BQI5	828 aa		14.68	□□□□□ -0.06
MARK3-223	ENST00000561071	BBX	Q8WY36	941 aa	Predicted RBP	14.67	□□□□□ -0.06
MARK3-223	ENST00000561071	PDAP1	Q13442	181 aa	Known RBP	14.64	□□□□□ -0.07
MARK3-223	ENST00000561071	BCL11B	Q9C0K0	894 aa	Predicted RBP	14.64	□□□□□ -0.07
MARK3-223	ENST00000561071	MS4A3	Q96HJ5	214 aa		14.63	□□□□□ -0.07
MARK3-223	ENST00000561071	NACAD	O15069	1562 aa		14.63	□□□□□ -0.07
MARK3-223	ENST00000561071	STK24	Q9Y6E0	443 aa		14.62	□□□□□ -0.07
MARK3-223	ENST00000561071	PSEN1	P49768	467 aa		14.61	□□□□□ -0.07
MARK3-223	ENST00000561071	PLCB2	Q00722	1185 aa		14.59	□□□□□ -0.07
MARK3-223	ENST00000561071	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	14.59	□□□□□ -0.07
MARK3-223	ENST00000561071	TRPC6	Q9Y210	931 aa		14.59	□□□□□ -0.07
MARK3-223	ENST00000561071	GALR2	O43603	387 aa	Predicted RBP	14.55	□□□□□ -0.08
MARK3-223	ENST00000561071	NKX1-1	Q15270	411 aa	Predicted RBP	14.55	□□□□□ -0.08
MARK3-223	ENST00000561071	SLC24A1	O60721	1099 aa		14.54	□□□□□ -0.08
MARK3-223	ENST00000561071	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	14.54	□□□□□ -0.08
MARK3-223	ENST00000561071	DNAJC5	Q9H3Z4	198 aa		14.54	□□□□□ -0.08
MARK3-223	ENST00000561071	CFAP44	Q96MT7	982 aa		14.52	□□□□□ -0.09
MARK3-223	ENST00000561071	SPRYD3	Q8NCJ5	442 aa		14.47	□□□□□ -0.09
MARK3-223	ENST00000561071	TMEM106C	Q9BVX2	250 aa		14.46	□□□□□ -0.09
MARK3-223	ENST00000561071	CABP2	Q9NPB3	220 aa		14.45	□□□□□ -0.1
MARK3-223	ENST00000561071	CLCN6	P51797	869 aa		14.43	□□□□□ -0.1
MARK3-223	ENST00000561071	GABBR2	O75899	941 aa		14.42	□□□□□ -0.1
MARK3-223	ENST00000561071	GTPBP6	O43824	516 aa	Predicted RBP	14.41	□□□□□ -0.1
MARK3-223	ENST00000561071	TIE1	P35590	1138 aa		14.41	□□□□□ -0.1
MARK3-223	ENST00000561071	HAP1	P54257	671 aa	Predicted RBP	14.41	□□□□□ -0.1
MARK3-223	ENST00000561071	EFCAB3	Q8N7B9	438 aa		14.41	□□□□□ -0.1
MARK3-223	ENST00000561071	BMP2K	Q9NSY1	1161 aa	Predicted RBP	14.41	□□□□□ -0.1
MARK3-223	ENST00000561071	MYO15B	Q96JP2	1530 aa		14.41	□□□□□ -0.1
MARK3-223	ENST00000561071	TTLL13P	A6NNM8	815 aa		14.4	□□□□□ -0.1
MARK3-223	ENST00000561071	UNC13A	Q9UPW8	1703 aa		14.4	□□□□□ -0.1
MARK3-223	ENST00000561071	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.36	□□□□□ -0.11
MARK3-223	ENST00000561071	MFRP	Q9BY79	579 aa		14.35	□□□□□ -0.11
MARK3-223	ENST00000561071	BICRA	Q9NZM4	1560 aa		14.34	□□□□□ -0.11
MARK3-223	ENST00000561071	GOLGA2	Q08379	1002 aa		14.32	□□□□□ -0.12
MARK3-223	ENST00000561071	PHF8	Q9UPP1	1060 aa		14.31	□□□□□ -0.12
MARK3-223	ENST00000561071	TRIM35	Q9UPQ4	493 aa		14.31	□□□□□ -0.12
MARK3-223	ENST00000561071	ATN1	P54259	1190 aa	Predicted RBP	14.3	□□□□□ -0.12
MARK3-223	ENST00000561071	SP7	Q8TDD2	431 aa	Predicted RBP	14.3	□□□□□ -0.12
MARK3-223	ENST00000561071	ATMIN	O43313	823 aa	Predicted RBP	14.29	□□□□□ -0.12
MARK3-223	ENST00000561071	SOX12	O15370	315 aa		14.28	□□□□□ -0.12
MARK3-223	ENST00000561071	TSHZ2	Q9NRE2	1034 aa		14.28	□□□□□ -0.12
MARK3-223	ENST00000561071	ASTL	Q6HA08	431 aa	Predicted RBP	14.27	□□□□□ -0.13
MARK3-223	ENST00000561071	RYDEN	Q9NUL5	291 aa	Known RBP	14.27	□□□□□ -0.13
MARK3-223	ENST00000561071	MKRN3	Q13064	507 aa	Known RBP	14.26	□□□□□ -0.13
MARK3-223	ENST00000561071	FBXO22	Q8NEZ5	403 aa		14.26	□□□□□ -0.13
MARK3-223	ENST00000561071	DCAF1	Q9Y4B6	1507 aa		14.25	□□□□□ -0.13
MARK3-223	ENST00000561071	NLRP6	P59044	892 aa		14.24	□□□□□ -0.13
MARK3-223	ENST00000561071	DCBLD2	Q96PD2	775 aa		14.23	□□□□□ -0.13
MARK3-223	ENST00000561071	MS4A4A	Q96JQ5	239 aa		14.21	□□□□□ -0.13
MARK3-223	ENST00000561071	SCRIB	Q14160	1630 aa		14.19	□□□□□ -0.14
MARK3-223	ENST00000561071	PPP1R37	O75864	691 aa		14.19	□□□□□ -0.14
MARK3-223	ENST00000561071	PELP1	Q8IZL8	1130 aa	Known RBP	14.19	□□□□□ -0.14
MARK3-223	ENST00000561071	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	14.17	□□□□□ -0.14	5e-7	■■□□□ 13.8
MARK3-223	ENST00000561071	POTEI	P0CG38	1075 aa		14.16	□□□□□ -0.14
MARK3-223	ENST00000561071	ILDR1	Q86SU0	546 aa	Predicted RBP	14.13	□□□□□ -0.15
MARK3-223	ENST00000561071	VSIG10	Q8N0Z9	540 aa		14.13	□□□□□ -0.15
MARK3-223	ENST00000561071	KDM2A	Q9Y2K7	1162 aa		14.13	□□□□□ -0.15
MARK3-223	ENST00000561071	IRX5	P78411	483 aa	Predicted RBP	14.1	□□□□□ -0.15
MARK3-223	ENST00000561071	IER5L	Q5T953	404 aa		14.09	□□□□□ -0.15
MARK3-223	ENST00000561071	DPY19L2	Q6NUT2	758 aa		14.08	□□□□□ -0.16
MARK3-223	ENST00000561071	PDCD7	Q8N8D1	485 aa	Known RBP	14.08	□□□□□ -0.16
MARK3-223	ENST00000561071	CADPS2	Q86UW7	1296 aa		14.07	□□□□□ -0.16
MARK3-223	ENST00000561071	OCEL1	Q9H607	264 aa		14.04	□□□□□ -0.16
MARK3-223	ENST00000561071	COLQ	Q9Y215	455 aa	Predicted RBP	14.03	□□□□□ -0.16
MARK3-223	ENST00000561071	SHROOM4	Q9ULL8	1493 aa		14.03	□□□□□ -0.16
MARK3-223	ENST00000561071	SLC39A7	Q92504	469 aa		14.02	□□□□□ -0.17
MARK3-223	ENST00000561071	PLCG2	P16885	1265 aa		14.01	□□□□□ -0.17
MARK3-223	ENST00000561071	POTEF	A5A3E0	1075 aa		14	□□□□□ -0.17

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