RNA–Protein interactions for RNA: ENST00000558847.1

CASC4-206, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-206ENST00000558847 CCDC61Q9Y6R9 512 aa12.05□□□□□ -0.48
CASC4-206ENST00000558847 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
CASC4-206ENST00000558847 FBXO3Q9UK99 471 aa11.99□□□□□ -0.49
CASC4-206ENST00000558847 KIF12Q96FN5 646 aa11.98□□□□□ -0.49
CASC4-206ENST00000558847 PELP1Q8IZL8 1130 aaKnown RBP11.95□□□□□ -0.5
CASC4-206ENST00000558847 MAP3K13O43283 966 aa11.94□□□□□ -0.5
CASC4-206ENST00000558847 ATMINO43313 823 aaPredicted RBP11.94□□□□□ -0.5
CASC4-206ENST00000558847 ASTLQ6HA08 431 aaPredicted RBP11.94□□□□□ -0.5
CASC4-206ENST00000558847 NUBP1P53384 320 aa11.92□□□□□ -0.5
CASC4-206ENST00000558847 FAM212AQ96EL1 285 aa11.92□□□□□ -0.5
CASC4-206ENST00000558847 SLC39A7Q92504 469 aa11.9□□□□□ -0.5
CASC4-206ENST00000558847 METRNQ9UJH8 293 aa11.9□□□□□ -0.5
CASC4-206ENST00000558847 C7P10643 843 aa11.87□□□□□ -0.51
CASC4-206ENST00000558847 ATN1P54259 1190 aaPredicted RBP11.86□□□□□ -0.51
CASC4-206ENST00000558847 KLHL34Q8N239 644 aa11.86□□□□□ -0.51
CASC4-206ENST00000558847 TRPC6Q9Y210 931 aa11.86□□□□□ -0.51
CASC4-206ENST00000558847 PCDHB13Q9Y5F0 798 aa11.86□□□□□ -0.51
CASC4-206ENST00000558847 POTEB2H3BUK9 544 aa11.84□□□□□ -0.51
CASC4-206ENST00000558847 DCAF8Q5TAQ9 597 aa11.84□□□□□ -0.51
CASC4-206ENST00000558847 BMP2KQ9NSY1 1161 aaPredicted RBP11.84□□□□□ -0.51
CASC4-206ENST00000558847 VASPP50552 380 aaPredicted RBP11.83□□□□□ -0.52
CASC4-206ENST00000558847 TIE1P35590 1138 aa11.82□□□□□ -0.52
CASC4-206ENST00000558847 OTUD5Q96G74 571 aa11.8□□□□□ -0.52
CASC4-206ENST00000558847 SGIP1Q9BQI5 828 aa11.8□□□□□ -0.52
CASC4-206ENST00000558847 TTLL13PA6NNM8 815 aa11.77□□□□□ -0.53
CASC4-206ENST00000558847 IFNL1Q8IU54 200 aa11.76□□□□□ -0.53
CASC4-206ENST00000558847 PYGBP11216 843 aa11.75□□□□□ -0.53
CASC4-206ENST00000558847 SEC24BO95487 1268 aa11.74□□□□□ -0.53
CASC4-206ENST00000558847 TRIM35Q9UPQ4 493 aa11.72□□□□□ -0.53
CASC4-206ENST00000558847 MAMSTRQ6ZN01 415 aa11.71□□□□□ -0.53
CASC4-206ENST00000558847 TMEM106CQ9BVX2 250 aa11.7□□□□□ -0.54
CASC4-206ENST00000558847 GSE1Q14687 1217 aa11.68□□□□□ -0.54
CASC4-206ENST00000558847 SCUBE2Q9NQ36 999 aa11.68□□□□□ -0.54
CASC4-206ENST00000558847 POTEJP0CG39 1038 aa11.67□□□□□ -0.54
CASC4-206ENST00000558847 IFNLR1Q8IU57 520 aaPredicted RBP11.67□□□□□ -0.54
CASC4-206ENST00000558847 POTEFA5A3E0 1075 aa11.65□□□□□ -0.54
CASC4-206ENST00000558847 PCDHB8Q9UN66 801 aa11.64□□□□□ -0.55
CASC4-206ENST00000558847 COLQQ9Y215 455 aaPredicted RBP11.64□□□□□ -0.55
CASC4-206ENST00000558847 IER5LQ5T953 404 aa11.63□□□□□ -0.55
CASC4-206ENST00000558847 SPOCK2Q92563 424 aa11.59□□□□□ -0.55
CASC4-206ENST00000558847 PLCG2P16885 1265 aa11.58□□□□□ -0.56
CASC4-206ENST00000558847 CIZ1Q9ULV3 898 aaPredicted RBP11.58□□□□□ -0.56
CASC4-206ENST00000558847 ZNF467Q7Z7K2 595 aaPredicted RBP11.57□□□□□ -0.56
CASC4-206ENST00000558847 GOLGA2Q08379 1002 aa11.52□□□□□ -0.57
CASC4-206ENST00000558847 FAM163AQ96GL9 167 aaPredicted RBP11.51□□□□□ -0.57
CASC4-206ENST00000558847 POTEMA6NI47 508 aa11.5□□□□□ -0.57
CASC4-206ENST00000558847 CHRM1P11229 460 aaPredicted RBP11.5□□□□□ -0.57
CASC4-206ENST00000558847 IRX5P78411 483 aaPredicted RBP11.49□□□□□ -0.57
CASC4-206ENST00000558847 POTEGQ6S5H5 508 aa11.48□□□□□ -0.57
CASC4-206ENST00000558847 OCEL1Q9H607 264 aa11.48□□□□□ -0.57
CASC4-206ENST00000558847 PSEN1P49768 467 aa11.46□□□□□ -0.57
CASC4-206ENST00000558847 MKRN3Q13064 507 aaKnown RBP11.46□□□□□ -0.57
CASC4-206ENST00000558847 SLAIN1Q8ND83 568 aa11.45□□□□□ -0.58
CASC4-206ENST00000558847 PLSCR2Q9NRY7 297 aa11.45□□□□□ -0.58
CASC4-206ENST00000558847 AMER1Q5JTC6 1135 aaPredicted RBP11.44□□□□□ -0.58
CASC4-206ENST00000558847 PDAP1Q13442 181 aaKnown RBP11.42□□□□□ -0.58
CASC4-206ENST00000558847 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.37□□□□□ -0.595e-6■■□□□ 13.8
CASC4-206ENST00000558847 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.36□□□□□ -0.59
CASC4-206ENST00000558847 TRIM41Q8WV44 630 aa11.35□□□□□ -0.59
CASC4-206ENST00000558847 CABP2Q9NPB3 220 aa11.35□□□□□ -0.59
CASC4-206ENST00000558847 LCE2DQ5TA82 110 aaPredicted RBP11.34□□□□□ -0.59
CASC4-206ENST00000558847 C3orf67Q6ZVT6 689 aa11.32□□□□□ -0.6
CASC4-206ENST00000558847 PDCD7Q8N8D1 485 aaKnown RBP11.32□□□□□ -0.6
CASC4-206ENST00000558847 L3MBTL3Q96JM7 780 aaPredicted RBP11.32□□□□□ -0.6
CASC4-206ENST00000558847 PKD2Q13563 968 aa11.29□□□□□ -0.6
CASC4-206ENST00000558847 RTN4Q9NQC3 1192 aaKnown RBP11.29□□□□□ -0.6
CASC4-206ENST00000558847 PCDH10Q9P2E7 1040 aa11.29□□□□□ -0.6
CASC4-206ENST00000558847 G3V3G9 751 aa11.27□□□□□ -0.61
CASC4-206ENST00000558847 SNPHO15079 494 aa11.25□□□□□ -0.61
CASC4-206ENST00000558847 ST18O60284 1047 aa11.25□□□□□ -0.61
CASC4-206ENST00000558847 DPY19L2Q6NUT2 758 aa11.22□□□□□ -0.61
CASC4-206ENST00000558847 RIOK3O14730 519 aaKnown RBP11.21□□□□□ -0.61
CASC4-206ENST00000558847 EFCAB3Q8N7B9 438 aa11.2□□□□□ -0.62
CASC4-206ENST00000558847 BOLA1Q9Y3E2 137 aa11.18□□□□□ -0.62
CASC4-206ENST00000558847 ILDR1Q86SU0 546 aaPredicted RBP11.17□□□□□ -0.62
CASC4-206ENST00000558847 CDAN1Q8IWY9 1227 aa11.16□□□□□ -0.62
CASC4-206ENST00000558847 VGFO15240 615 aaPredicted RBP11.15□□□□□ -0.62
CASC4-206ENST00000558847 ECM2O94769 699 aaPredicted RBP11.15□□□□□ -0.62
CASC4-206ENST00000558847 RNF25Q96BH1 459 aaPredicted RBP11.15□□□□□ -0.62
CASC4-206ENST00000558847 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.14□□□□□ -0.63
CASC4-206ENST00000558847 ZFP91Q96JP5 570 aaPredicted RBP11.14□□□□□ -0.63
CASC4-206ENST00000558847 TMEM121BQ9BXQ6 578 aaPredicted RBP11.13□□□□□ -0.63
CASC4-206ENST00000558847 MARVELD3Q96A59 401 aa11.11□□□□□ -0.63
CASC4-206ENST00000558847 RGL2O15211 777 aa11.1□□□□□ -0.63
CASC4-206ENST00000558847 TAOK2Q9UL54 1235 aa11.1□□□□□ -0.63
CASC4-206ENST00000558847 SOX12O15370 315 aa11.07□□□□□ -0.64
CASC4-206ENST00000558847 EMP3P54852 163 aa11.05□□□□□ -0.64
CASC4-206ENST00000558847 BCL11BQ9C0K0 894 aaPredicted RBP11.04□□□□□ -0.64
CASC4-206ENST00000558847 PHF8Q9UPP1 1060 aa11.04□□□□□ -0.64
CASC4-206ENST00000558847 STK24Q9Y6E0 443 aa11.03□□□□□ -0.64
CASC4-206ENST00000558847 SLC24A1O60721 1099 aa11.01□□□□□ -0.65
CASC4-206ENST00000558847 MICALL2Q8IY33 904 aa11.01□□□□□ -0.65
CASC4-206ENST00000558847 ZNF710Q8N1W2 664 aa11.01□□□□□ -0.65
CASC4-206ENST00000558847 STK25O00506 426 aa11□□□□□ -0.65
CASC4-206ENST00000558847 NLRP6P59044 892 aa10.98□□□□□ -0.65
CASC4-206ENST00000558847 MS4A4AQ96JQ5 239 aa10.98□□□□□ -0.65
CASC4-206ENST00000558847 FAM205CA6NFA0 338 aa10.97□□□□□ -0.65
CASC4-206ENST00000558847 DOK7Q18PE1 504 aa10.97□□□□□ -0.65
CASC4-206ENST00000558847 HOXB3P14651 431 aaPredicted RBP10.95□□□□□ -0.66
CASC4-206ENST00000558847 RIMBP2O15034 1052 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms