RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 EVX2Q03828 476 aa9.78□□□□□ -0.84
SPG11-206ENST00000558093 ZNF579Q8NAF0 562 aaKnown RBP9.76□□□□□ -0.85
SPG11-206ENST00000558093 PHF12Q96QT6 1004 aa9.75□□□□□ -0.85
SPG11-206ENST00000558093 CCDC61Q9Y6R9 512 aa9.75□□□□□ -0.85
SPG11-206ENST00000558093 SP7Q8TDD2 431 aaPredicted RBP9.73□□□□□ -0.85
SPG11-206ENST00000558093 PYGBP11216 843 aa9.71□□□□□ -0.86
SPG11-206ENST00000558093 TRIM41Q8WV44 630 aa9.7□□□□□ -0.86
SPG11-206ENST00000558093 CLCN6P51797 869 aa9.67□□□□□ -0.86
SPG11-206ENST00000558093 KIF12Q96FN5 646 aa9.66□□□□□ -0.86
SPG11-206ENST00000558093 MAP3K13O43283 966 aa9.65□□□□□ -0.86
SPG11-206ENST00000558093 ECM2O94769 699 aaPredicted RBP9.65□□□□□ -0.86
SPG11-206ENST00000558093 AMER1Q5JTC6 1135 aaPredicted RBP9.65□□□□□ -0.86
SPG11-206ENST00000558093 PCDHB13Q9Y5F0 798 aa9.65□□□□□ -0.86
SPG11-206ENST00000558093 GABBR2O75899 941 aa9.64□□□□□ -0.87
SPG11-206ENST00000558093 MS4A3Q96HJ5 214 aa9.63□□□□□ -0.87
SPG11-206ENST00000558093 PKD2Q13563 968 aa9.62□□□□□ -0.87
SPG11-206ENST00000558093 GALR2O43603 387 aaPredicted RBP9.61□□□□□ -0.87
SPG11-206ENST00000558093 SGIP1Q9BQI5 828 aa9.61□□□□□ -0.87
SPG11-206ENST00000558093 CHRM1P11229 460 aaPredicted RBP9.6□□□□□ -0.87
SPG11-206ENST00000558093 ZNF467Q7Z7K2 595 aaPredicted RBP9.59□□□□□ -0.87
SPG11-206ENST00000558093 IFNL1Q8IU54 200 aa9.57□□□□□ -0.88
SPG11-206ENST00000558093 RTN4Q9NQC3 1192 aaKnown RBP9.57□□□□□ -0.88
SPG11-206ENST00000558093 PCDHB8Q9UN66 801 aa9.57□□□□□ -0.88
SPG11-206ENST00000558093 DCBLD2Q96PD2 775 aa9.55□□□□□ -0.88
SPG11-206ENST00000558093 RIOK3O14730 519 aaKnown RBP9.53□□□□□ -0.88
SPG11-206ENST00000558093 DCAF8L2P0C7V8 631 aa9.52□□□□□ -0.89
SPG11-206ENST00000558093 TAOK2Q9UL54 1235 aa9.52□□□□□ -0.89
SPG11-206ENST00000558093 RGL2O15211 777 aa9.51□□□□□ -0.89
SPG11-206ENST00000558093 RNF25Q96BH1 459 aaPredicted RBP9.51□□□□□ -0.89
SPG11-206ENST00000558093 PDAP1Q13442 181 aaKnown RBP9.5□□□□□ -0.89
SPG11-206ENST00000558093 TRPC6Q9Y210 931 aa9.5□□□□□ -0.89
SPG11-206ENST00000558093 TIE1P35590 1138 aa9.49□□□□□ -0.89
SPG11-206ENST00000558093 VGFO15240 615 aaPredicted RBP9.48□□□□□ -0.89
SPG11-206ENST00000558093 TMEM106CQ9BVX2 250 aa9.48□□□□□ -0.89
SPG11-206ENST00000558093 PSEN1P49768 467 aa9.47□□□□□ -0.89
SPG11-206ENST00000558093 BMP2KQ9NSY1 1161 aaPredicted RBP9.47□□□□□ -0.89
SPG11-206ENST00000558093 TTLL13PA6NNM8 815 aa9.45□□□□□ -0.9
SPG11-206ENST00000558093 GOLGA2Q08379 1002 aa9.44□□□□□ -0.9
SPG11-206ENST00000558093 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.43□□□□□ -0.9
SPG11-206ENST00000558093 ZFP91Q96JP5 570 aaPredicted RBP9.43□□□□□ -0.9
SPG11-206ENST00000558093 ATMINO43313 823 aaPredicted RBP9.42□□□□□ -0.9
SPG11-206ENST00000558093 ASTLQ6HA08 431 aaPredicted RBP9.42□□□□□ -0.9
SPG11-206ENST00000558093 STK25O00506 426 aa9.41□□□□□ -0.9
SPG11-206ENST00000558093 ATN1P54259 1190 aaPredicted RBP9.41□□□□□ -0.9
SPG11-206ENST00000558093 TRIM35Q9UPQ4 493 aa9.41□□□□□ -0.9
SPG11-206ENST00000558093 POTEIP0CG38 1075 aa9.39□□□□□ -0.91
SPG11-206ENST00000558093 STK24Q9Y6E0 443 aa9.39□□□□□ -0.91
SPG11-206ENST00000558093 BCL11BQ9C0K0 894 aaPredicted RBP9.38□□□□□ -0.91
SPG11-206ENST00000558093 CABP2Q9NPB3 220 aa9.38□□□□□ -0.91
SPG11-206ENST00000558093 CHGAP10645 457 aaKnown RBP9.36□□□□□ -0.91
SPG11-206ENST00000558093 MKRN3Q13064 507 aaKnown RBP9.36□□□□□ -0.91
SPG11-206ENST00000558093 SLC39A7Q92504 469 aa9.34□□□□□ -0.91
SPG11-206ENST00000558093 PELP1Q8IZL8 1130 aaKnown RBP9.33□□□□□ -0.92
SPG11-206ENST00000558093 HS6ST3Q8IZP7 471 aa9.32□□□□□ -0.92
SPG11-206ENST00000558093 METRNQ9UJH8 293 aa9.32□□□□□ -0.92
SPG11-206ENST00000558093 SEC24BO95487 1268 aa9.31□□□□□ -0.92
SPG11-206ENST00000558093 C7P10643 843 aa9.31□□□□□ -0.92
SPG11-206ENST00000558093 IER5LQ5T953 404 aa9.31□□□□□ -0.92
SPG11-206ENST00000558093 EFCAB3Q8N7B9 438 aa9.3□□□□□ -0.92
SPG11-206ENST00000558093 PLCG2P16885 1265 aa9.28□□□□□ -0.92
SPG11-206ENST00000558093 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.27□□□□□ -0.93
SPG11-206ENST00000558093 SOX12O15370 315 aa9.24□□□□□ -0.93
SPG11-206ENST00000558093 IRX5P78411 483 aaPredicted RBP9.23□□□□□ -0.93
SPG11-206ENST00000558093 OCEL1Q9H607 264 aa9.23□□□□□ -0.93
SPG11-206ENST00000558093 NLRP6P59044 892 aa9.21□□□□□ -0.94
SPG11-206ENST00000558093 PHF8Q9UPP1 1060 aa9.21□□□□□ -0.94
SPG11-206ENST00000558093 COLQQ9Y215 455 aaPredicted RBP9.21□□□□□ -0.94
SPG11-206ENST00000558093 G3V3G9 751 aa9.18□□□□□ -0.94
SPG11-206ENST00000558093 PDCD7Q8N8D1 485 aaKnown RBP9.18□□□□□ -0.94
SPG11-206ENST00000558093 MFRPQ9BY79 579 aa9.18□□□□□ -0.94
SPG11-206ENST00000558093 POTEFA5A3E0 1075 aa9.17□□□□□ -0.94
SPG11-206ENST00000558093 BBXQ8WY36 941 aaPredicted RBP9.17□□□□□ -0.94
SPG11-206ENST00000558093 DNAJC5Q9H3Z4 198 aa9.17□□□□□ -0.94
SPG11-206ENST00000558093 RYDENQ9NUL5 291 aaKnown RBP9.17□□□□□ -0.94
SPG11-206ENST00000558093 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.17□□□□□ -0.94
SPG11-206ENST00000558093 NKX1-1Q15270 411 aaPredicted RBP9.15□□□□□ -0.94
SPG11-206ENST00000558093 LHX8Q68G74 356 aa9.14□□□□□ -0.95
SPG11-206ENST00000558093 ILDR1Q86SU0 546 aaPredicted RBP9.13□□□□□ -0.95
SPG11-206ENST00000558093 FBXO22Q8NEZ5 403 aa9.13□□□□□ -0.95
SPG11-206ENST00000558093 L3MBTL3Q96JM7 780 aaPredicted RBP9.13□□□□□ -0.95
SPG11-206ENST00000558093 DPY19L2Q6NUT2 758 aa9.12□□□□□ -0.95
SPG11-206ENST00000558093 MS4A4AQ96JQ5 239 aa9.12□□□□□ -0.95
SPG11-206ENST00000558093 SCUBE2Q9NQ36 999 aa9.1□□□□□ -0.95
SPG11-206ENST00000558093 POTEB2H3BUK9 544 aa9.09□□□□□ -0.95
SPG11-206ENST00000558093 MAMSTRQ6ZN01 415 aa9.09□□□□□ -0.95
SPG11-206ENST00000558093 C3orf67Q6ZVT6 689 aa9.09□□□□□ -0.95
SPG11-206ENST00000558093 BOLA1Q9Y3E2 137 aa9.09□□□□□ -0.95
SPG11-206ENST00000558093 PAXIP1Q6ZW49 1069 aaPredicted RBP9.07□□□□□ -0.96
SPG11-206ENST00000558093 CFAP44Q96MT7 982 aa9.07□□□□□ -0.96
SPG11-206ENST00000558093 GTPBP6O43824 516 aaPredicted RBP9.06□□□□□ -0.96
SPG11-206ENST00000558093 SPRYD3Q8NCJ5 442 aa9.06□□□□□ -0.96
SPG11-206ENST00000558093 MICALL2Q8IY33 904 aa9.05□□□□□ -0.96
SPG11-206ENST00000558093 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.05□□□□□ -0.96
SPG11-206ENST00000558093 PPP1R37O75864 691 aa9.03□□□□□ -0.96
SPG11-206ENST00000558093 POTEJP0CG39 1038 aa9.03□□□□□ -0.96
SPG11-206ENST00000558093 SLAIN1Q8ND83 568 aa8.99□□□□□ -0.97
SPG11-206ENST00000558093 TMEM121BQ9BXQ6 578 aaPredicted RBP8.99□□□□□ -0.97
SPG11-206ENST00000558093 OTUD5Q96G74 571 aa8.98□□□□□ -0.97
SPG11-206ENST00000558093 PLCB2Q00722 1185 aa8.95□□□□□ -0.98
SPG11-206ENST00000558093 TMC2Q8TDI7 906 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms