RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 ATMINO43313 823 aaPredicted RBP17.79■□□□□ 0.44
VRK1-205ENST00000555402 MIER1Q8N108 512 aa17.76■□□□□ 0.43
VRK1-205ENST00000555402 PLEKHG5O94827 1062 aa17.74■□□□□ 0.43
VRK1-205ENST00000555402 METRNQ9UJH8 293 aa17.74■□□□□ 0.43
VRK1-205ENST00000555402 SLC39A7Q92504 469 aa17.73■□□□□ 0.43
VRK1-205ENST00000555402 C7P10643 843 aa17.71■□□□□ 0.43
VRK1-205ENST00000555402 KIF12Q96FN5 646 aa17.71■□□□□ 0.43
VRK1-205ENST00000555402 ATN1P54259 1190 aaPredicted RBP17.64■□□□□ 0.41
VRK1-205ENST00000555402 RASEFQ8IZ41 740 aa17.64■□□□□ 0.41
VRK1-205ENST00000555402 POTEJP0CG39 1038 aa17.61■□□□□ 0.41
VRK1-205ENST00000555402 MAP3K13O43283 966 aa17.6■□□□□ 0.41
VRK1-205ENST00000555402 PLCD3Q8N3E9 789 aa17.58■□□□□ 0.4
VRK1-205ENST00000555402 TRPC6Q9Y210 931 aa17.57■□□□□ 0.4
VRK1-205ENST00000555402 BMP2KQ9NSY1 1161 aaPredicted RBP17.56■□□□□ 0.4
VRK1-205ENST00000555402 PLSCR2Q9NRY7 297 aa17.55■□□□□ 0.4
VRK1-205ENST00000555402 MAMSTRQ6ZN01 415 aa17.53■□□□□ 0.4
VRK1-205ENST00000555402 TIE1P35590 1138 aa17.5■□□□□ 0.39
VRK1-205ENST00000555402 POTEMA6NI47 508 aa17.48■□□□□ 0.39
VRK1-205ENST00000555402 POTEFA5A3E0 1075 aa17.46■□□□□ 0.39
VRK1-205ENST00000555402 ZBTB47Q9UFB7 747 aaPredicted RBP17.46■□□□□ 0.39
VRK1-205ENST00000555402 NUBP1P53384 320 aa17.43■□□□□ 0.38
VRK1-205ENST00000555402 POTEGQ6S5H5 508 aa17.43■□□□□ 0.38
VRK1-205ENST00000555402 TTLL13PA6NNM8 815 aa17.4■□□□□ 0.38
VRK1-205ENST00000555402 SGIP1Q9BQI5 828 aa17.4■□□□□ 0.38
VRK1-205ENST00000555402 SCUBE2Q9NQ36 999 aa17.4■□□□□ 0.38
VRK1-205ENST00000555402 FKBP8Q14318 412 aa17.39■□□□□ 0.37
VRK1-205ENST00000555402 PCDHB13Q9Y5F0 798 aa17.38■□□□□ 0.37
VRK1-205ENST00000555402 COLQQ9Y215 455 aaPredicted RBP17.33■□□□□ 0.36
VRK1-205ENST00000555402 SEC24BO95487 1268 aa17.32■□□□□ 0.36
VRK1-205ENST00000555402 TRIM35Q9UPQ4 493 aa17.3■□□□□ 0.36
VRK1-205ENST00000555402 FAM212AQ96EL1 285 aa17.29■□□□□ 0.36
VRK1-205ENST00000555402 IFNL1Q8IU54 200 aa17.28■□□□□ 0.36
VRK1-205ENST00000555402 FAM163AQ96GL9 167 aaPredicted RBP17.27■□□□□ 0.36
VRK1-205ENST00000555402 IER5LQ5T953 404 aa17.26■□□□□ 0.35
VRK1-205ENST00000555402 LCE2DQ5TA82 110 aaPredicted RBP17.26■□□□□ 0.35
VRK1-205ENST00000555402 PCDH10Q9P2E7 1040 aa17.23■□□□□ 0.35
VRK1-205ENST00000555402 TMEM106CQ9BVX2 250 aa17.18■□□□□ 0.34
VRK1-205ENST00000555402 DCAF8Q5TAQ9 597 aa17.14■□□□□ 0.33
VRK1-205ENST00000555402 FBXO3Q9UK99 471 aa17.12■□□□□ 0.33
VRK1-205ENST00000555402 PYGBP11216 843 aa17.08■□□□□ 0.32
VRK1-205ENST00000555402 PLCG2P16885 1265 aa17.06■□□□□ 0.32
VRK1-205ENST00000555402 IRX5P78411 483 aaPredicted RBP17.03■□□□□ 0.32
VRK1-205ENST00000555402 SLAIN1Q8ND83 568 aa17.01■□□□□ 0.31
VRK1-205ENST00000555402 PCDHB8Q9UN66 801 aa17■□□□□ 0.31
VRK1-205ENST00000555402 OCEL1Q9H607 264 aa16.95■□□□□ 0.3
VRK1-205ENST00000555402 KLHL34Q8N239 644 aa16.94■□□□□ 0.3
VRK1-205ENST00000555402 VASPP50552 380 aaPredicted RBP16.9■□□□□ 0.3
VRK1-205ENST00000555402 GSE1Q14687 1217 aa16.89■□□□□ 0.29
VRK1-205ENST00000555402 ST18O60284 1047 aa16.87■□□□□ 0.29
VRK1-205ENST00000555402 CDAN1Q8IWY9 1227 aa16.85■□□□□ 0.29
VRK1-205ENST00000555402 ZNF467Q7Z7K2 595 aaPredicted RBP16.82■□□□□ 0.28
VRK1-205ENST00000555402 CHRM1P11229 460 aaPredicted RBP16.79■□□□□ 0.28
VRK1-205ENST00000555402 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.79■□□□□ 0.28
VRK1-205ENST00000555402 GOLGA2Q08379 1002 aa16.73■□□□□ 0.27
VRK1-205ENST00000555402 PDCD7Q8N8D1 485 aaKnown RBP16.73■□□□□ 0.27
VRK1-205ENST00000555402 MKRN3Q13064 507 aaKnown RBP16.72■□□□□ 0.27
VRK1-205ENST00000555402 SNPHO15079 494 aa16.7■□□□□ 0.26
VRK1-205ENST00000555402 PSEN1P49768 467 aa16.69■□□□□ 0.26
VRK1-205ENST00000555402 TMEM121BQ9BXQ6 578 aaPredicted RBP16.67■□□□□ 0.26
VRK1-205ENST00000555402 L3MBTL3Q96JM7 780 aaPredicted RBP16.65■□□□□ 0.26
VRK1-205ENST00000555402 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.64■□□□□ 0.25
VRK1-205ENST00000555402 C3orf67Q6ZVT6 689 aa16.62■□□□□ 0.25
VRK1-205ENST00000555402 IFNLR1Q8IU57 520 aaPredicted RBP16.61■□□□□ 0.25
VRK1-205ENST00000555402 SPOCK2Q92563 424 aa16.61■□□□□ 0.25
VRK1-205ENST00000555402 PDAP1Q13442 181 aaKnown RBP16.59■□□□□ 0.25
VRK1-205ENST00000555402 CIZ1Q9ULV3 898 aaPredicted RBP16.57■□□□□ 0.24
VRK1-205ENST00000555402 MARVELD3Q96A59 401 aa16.56■□□□□ 0.24
VRK1-205ENST00000555402 ILDR1Q86SU0 546 aaPredicted RBP16.55■□□□□ 0.24
VRK1-205ENST00000555402 DPY19L2Q6NUT2 758 aa16.49■□□□□ 0.23
VRK1-205ENST00000555402 CABP2Q9NPB3 220 aa16.49■□□□□ 0.23
VRK1-205ENST00000555402 SPNS2Q8IVW8 549 aa16.45■□□□□ 0.22
VRK1-205ENST00000555402 EMP3P54852 163 aa16.42■□□□□ 0.22
VRK1-205ENST00000555402 MMRN1Q13201 1228 aa16.41■□□□□ 0.22
VRK1-205ENST00000555402 BOLA1Q9Y3E2 137 aa16.4■□□□□ 0.22
VRK1-205ENST00000555402 G3V3G9 751 aa16.38■□□□□ 0.21
VRK1-205ENST00000555402 POTEB3A0JP26 581 aa16.32■□□□□ 0.2
VRK1-205ENST00000555402 POTEBQ6S5H4 581 aa16.32■□□□□ 0.2
VRK1-205ENST00000555402 HS3ST6Q96QI5 342 aa16.32■□□□□ 0.2
VRK1-205ENST00000555402 FAM205CA6NFA0 338 aa16.31■□□□□ 0.2
VRK1-205ENST00000555402 TRIM41Q8WV44 630 aa16.3■□□□□ 0.2
VRK1-205ENST00000555402 HOXB3P14651 431 aaPredicted RBP16.27■□□□□ 0.2
VRK1-205ENST00000555402 EFCAB3Q8N7B9 438 aa16.27■□□□□ 0.2
VRK1-205ENST00000555402 KRTAP3-3Q9BYR6 98 aa16.25■□□□□ 0.19
VRK1-205ENST00000555402 KRTAP3-2Q9BYR7 98 aa16.25■□□□□ 0.19
VRK1-205ENST00000555402 ZNF710Q8N1W2 664 aa16.19■□□□□ 0.18
VRK1-205ENST00000555402 HOXB1P14653 301 aaPredicted RBP16.18■□□□□ 0.18
VRK1-205ENST00000555402 DOK7Q18PE1 504 aa16.16■□□□□ 0.18
VRK1-205ENST00000555402 RIOK3O14730 519 aaKnown RBP16.12■□□□□ 0.17
VRK1-205ENST00000555402 SOX12O15370 315 aa16.11■□□□□ 0.17
VRK1-205ENST00000555402 MICALL2Q8IY33 904 aa16.1■□□□□ 0.17
VRK1-205ENST00000555402 RNF25Q96BH1 459 aaPredicted RBP16.1■□□□□ 0.17
VRK1-205ENST00000555402 ERBB3P21860 1342 aa16.08■□□□□ 0.16
VRK1-205ENST00000555402 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.07■□□□□ 0.16
VRK1-205ENST00000555402 TMEM92Q6UXU6 159 aa16.07■□□□□ 0.16
VRK1-205ENST00000555402 ZFP91Q96JP5 570 aaPredicted RBP16.07■□□□□ 0.16
VRK1-205ENST00000555402 RIMBP2O15034 1052 aa16.06■□□□□ 0.16
VRK1-205ENST00000555402 VGFO15240 615 aaPredicted RBP16.05■□□□□ 0.16
VRK1-205ENST00000555402 MS4A4AQ96JQ5 239 aa16.05■□□□□ 0.16
VRK1-205ENST00000555402 PHF8Q9UPP1 1060 aa16.02■□□□□ 0.16
VRK1-205ENST00000555402 ZSWIM6Q9HCJ5 1215 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms