RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 GSE1Q14687 1217 aa8.87□□□□□ -0.99
SCFD1-213ENST00000554776 DCAF8Q5TAQ9 597 aa8.87□□□□□ -0.99
SCFD1-213ENST00000554776 SP7Q8TDD2 431 aaPredicted RBP8.86□□□□□ -0.99
SCFD1-213ENST00000554776 PHF12Q96QT6 1004 aa8.84□□□□□ -0.99
SCFD1-213ENST00000554776 CIZ1Q9ULV3 898 aaPredicted RBP8.83□□□□□ -1
SCFD1-213ENST00000554776 CLCN6P51797 869 aa8.81□□□□□ -1
SCFD1-213ENST00000554776 KIF12Q96FN5 646 aa8.8□□□□□ -1
SCFD1-213ENST00000554776 GABBR2O75899 941 aa8.78□□□□□ -1
SCFD1-213ENST00000554776 CHRM1P11229 460 aaPredicted RBP8.78□□□□□ -1
SCFD1-213ENST00000554776 PYGBP11216 843 aa8.77□□□□□ -1.01
SCFD1-213ENST00000554776 TRIM41Q8WV44 630 aa8.77□□□□□ -1.01
SCFD1-213ENST00000554776 MAP3K13O43283 966 aa8.76□□□□□ -1.01
SCFD1-213ENST00000554776 PKD2Q13563 968 aa8.76□□□□□ -1.01
SCFD1-213ENST00000554776 SGIP1Q9BQI5 828 aa8.75□□□□□ -1.01
SCFD1-213ENST00000554776 MS4A3Q96HJ5 214 aa8.74□□□□□ -1.01
SCFD1-213ENST00000554776 GALR2O43603 387 aaPredicted RBP8.73□□□□□ -1.01
SCFD1-213ENST00000554776 PCDHB13Q9Y5F0 798 aa8.73□□□□□ -1.01
SCFD1-213ENST00000554776 IFNL1Q8IU54 200 aa8.7□□□□□ -1.02
SCFD1-213ENST00000554776 ECM2O94769 699 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-213ENST00000554776 AMER1Q5JTC6 1135 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-213ENST00000554776 RTN4Q9NQC3 1192 aaKnown RBP8.68□□□□□ -1.02
SCFD1-213ENST00000554776 ZNF467Q7Z7K2 595 aaPredicted RBP8.67□□□□□ -1.02
SCFD1-213ENST00000554776 PCDHB8Q9UN66 801 aa8.67□□□□□ -1.02
SCFD1-213ENST00000554776 RNF25Q96BH1 459 aaPredicted RBP8.66□□□□□ -1.02
SCFD1-213ENST00000554776 TRPC6Q9Y210 931 aa8.65□□□□□ -1.02
SCFD1-213ENST00000554776 RIOK3O14730 519 aaKnown RBP8.63□□□□□ -1.03
SCFD1-213ENST00000554776 RGL2O15211 777 aa8.63□□□□□ -1.03
SCFD1-213ENST00000554776 TIE1P35590 1138 aa8.62□□□□□ -1.03
SCFD1-213ENST00000554776 DCBLD2Q96PD2 775 aa8.62□□□□□ -1.03
SCFD1-213ENST00000554776 POTEIP0CG38 1075 aa8.61□□□□□ -1.03
SCFD1-213ENST00000554776 ASTLQ6HA08 431 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-213ENST00000554776 BMP2KQ9NSY1 1161 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-213ENST00000554776 ATMINO43313 823 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-213ENST00000554776 PDAP1Q13442 181 aaKnown RBP8.59□□□□□ -1.03
SCFD1-213ENST00000554776 TTLL13PA6NNM8 815 aa8.58□□□□□ -1.04
SCFD1-213ENST00000554776 VGFO15240 615 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-213ENST00000554776 PSEN1P49768 467 aa8.58□□□□□ -1.04
SCFD1-213ENST00000554776 TMEM106CQ9BVX2 250 aa8.57□□□□□ -1.04
SCFD1-213ENST00000554776 ATN1P54259 1190 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-213ENST00000554776 TAOK2Q9UL54 1235 aa8.56□□□□□ -1.04
SCFD1-213ENST00000554776 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-213ENST00000554776 ZFP91Q96JP5 570 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-213ENST00000554776 PELP1Q8IZL8 1130 aaKnown RBP8.53□□□□□ -1.04
SCFD1-213ENST00000554776 TRIM35Q9UPQ4 493 aa8.52□□□□□ -1.05
SCFD1-213ENST00000554776 SLC39A7Q92504 469 aa8.48□□□□□ -1.05
SCFD1-213ENST00000554776 STK25O00506 426 aa8.47□□□□□ -1.05
SCFD1-213ENST00000554776 BCL11BQ9C0K0 894 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-213ENST00000554776 CABP2Q9NPB3 220 aa8.47□□□□□ -1.05
SCFD1-213ENST00000554776 C7P10643 843 aa8.46□□□□□ -1.06
SCFD1-213ENST00000554776 IER5LQ5T953 404 aa8.46□□□□□ -1.06
SCFD1-213ENST00000554776 HS6ST3Q8IZP7 471 aa8.46□□□□□ -1.06
SCFD1-213ENST00000554776 GOLGA2Q08379 1002 aa8.45□□□□□ -1.06
SCFD1-213ENST00000554776 METRNQ9UJH8 293 aa8.45□□□□□ -1.06
SCFD1-213ENST00000554776 STK24Q9Y6E0 443 aa8.45□□□□□ -1.06
SCFD1-213ENST00000554776 DCAF8L2P0C7V8 631 aa8.44□□□□□ -1.06
SCFD1-213ENST00000554776 CHGAP10645 457 aaKnown RBP8.43□□□□□ -1.06
SCFD1-213ENST00000554776 MKRN3Q13064 507 aaKnown RBP8.43□□□□□ -1.06
SCFD1-213ENST00000554776 EFCAB3Q8N7B9 438 aa8.42□□□□□ -1.06
SCFD1-213ENST00000554776 POTEFA5A3E0 1075 aa8.41□□□□□ -1.06
SCFD1-213ENST00000554776 IRX5P78411 483 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-213ENST00000554776 ILDR1Q86SU0 546 aaPredicted RBP8.4□□□□□ -1.06
SCFD1-213ENST00000554776 DNAJC5Q9H3Z4 198 aa8.4□□□□□ -1.06
SCFD1-213ENST00000554776 COLQQ9Y215 455 aaPredicted RBP8.39□□□□□ -1.07
SCFD1-213ENST00000554776 SOX12O15370 315 aa8.38□□□□□ -1.07
SCFD1-213ENST00000554776 SEC24BO95487 1268 aa8.38□□□□□ -1.07
SCFD1-213ENST00000554776 OCEL1Q9H607 264 aa8.38□□□□□ -1.07
SCFD1-213ENST00000554776 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.37□□□□□ -1.072e-10■■■□□ 15.5
SCFD1-213ENST00000554776 PLCG2P16885 1265 aa8.36□□□□□ -1.07
SCFD1-213ENST00000554776 PDCD7Q8N8D1 485 aaKnown RBP8.36□□□□□ -1.07
SCFD1-213ENST00000554776 MFRPQ9BY79 579 aa8.35□□□□□ -1.07
SCFD1-213ENST00000554776 PHF8Q9UPP1 1060 aa8.34□□□□□ -1.07
SCFD1-213ENST00000554776 POTEB2H3BUK9 544 aa8.33□□□□□ -1.08
SCFD1-213ENST00000554776 NKX1-1Q15270 411 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-213ENST00000554776 FBXO22Q8NEZ5 403 aa8.33□□□□□ -1.08
SCFD1-213ENST00000554776 NLRP6P59044 892 aa8.32□□□□□ -1.08
SCFD1-213ENST00000554776 MS4A4AQ96JQ5 239 aa8.32□□□□□ -1.08
SCFD1-213ENST00000554776 LHX8Q68G74 356 aa8.31□□□□□ -1.08
SCFD1-213ENST00000554776 BBXQ8WY36 941 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-213ENST00000554776 POTEJP0CG39 1038 aa8.29□□□□□ -1.08
SCFD1-213ENST00000554776 DPY19L2Q6NUT2 758 aa8.29□□□□□ -1.08
SCFD1-213ENST00000554776 L3MBTL3Q96JM7 780 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-213ENST00000554776 RYDENQ9NUL5 291 aaKnown RBP8.26□□□□□ -1.09
SCFD1-213ENST00000554776 GTPBP6O43824 516 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-213ENST00000554776 BOLA1Q9Y3E2 137 aa8.24□□□□□ -1.09
SCFD1-213ENST00000554776 MAMSTRQ6ZN01 415 aa8.23□□□□□ -1.09
SCFD1-213ENST00000554776 TMEM121BQ9BXQ6 578 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-213ENST00000554776 PPP1R37O75864 691 aa8.22□□□□□ -1.09
SCFD1-213ENST00000554776 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.22□□□□□ -1.09
SCFD1-213ENST00000554776 MICALL2Q8IY33 904 aa8.21□□□□□ -1.1
SCFD1-213ENST00000554776 OTUD5Q96G74 571 aa8.21□□□□□ -1.1
SCFD1-213ENST00000554776 G3V3G9 751 aa8.2□□□□□ -1.1
SCFD1-213ENST00000554776 SCUBE2Q9NQ36 999 aa8.2□□□□□ -1.1
SCFD1-213ENST00000554776 C3orf67Q6ZVT6 689 aa8.17□□□□□ -1.1
SCFD1-213ENST00000554776 SPRYD3Q8NCJ5 442 aa8.17□□□□□ -1.1
SCFD1-213ENST00000554776 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.17□□□□□ -1.1
SCFD1-213ENST00000554776 PAXIP1Q6ZW49 1069 aaPredicted RBP8.15□□□□□ -1.1
SCFD1-213ENST00000554776 CFAP44Q96MT7 982 aa8.13□□□□□ -1.11
SCFD1-213ENST00000554776 SLAIN1Q8ND83 568 aa8.12□□□□□ -1.11
SCFD1-213ENST00000554776 TMEM92Q6UXU6 159 aa8.11□□□□□ -1.11
SCFD1-213ENST00000554776 PLCB2Q00722 1185 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms