RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 NUBP1P53384 320 aa13□□□□□ -0.33
SCFD1-212ENST00000554486 GABBR2O75899 941 aa12.99□□□□□ -0.33
SCFD1-212ENST00000554486 RASEFQ8IZ41 740 aa12.99□□□□□ -0.33
SCFD1-212ENST00000554486 CCDC180Q9P1Z9 1646 aa12.99□□□□□ -0.33
SCFD1-212ENST00000554486 FAM212AQ96EL1 285 aa12.98□□□□□ -0.33
SCFD1-212ENST00000554486 SPOCK2Q92563 424 aa12.94□□□□□ -0.34
SCFD1-212ENST00000554486 DCAF8Q5TAQ9 597 aa12.93□□□□□ -0.34
SCFD1-212ENST00000554486 CCDC61Q9Y6R9 512 aa12.92□□□□□ -0.34
SCFD1-212ENST00000554486 PHF12Q96QT6 1004 aa12.91□□□□□ -0.34
SCFD1-212ENST00000554486 PKD2Q13563 968 aa12.9□□□□□ -0.34
SCFD1-212ENST00000554486 GSE1Q14687 1217 aa12.89□□□□□ -0.35
SCFD1-212ENST00000554486 KIF12Q96FN5 646 aa12.82□□□□□ -0.36
SCFD1-212ENST00000554486 DCBLD2Q96PD2 775 aa12.81□□□□□ -0.36
SCFD1-212ENST00000554486 GALR2O43603 387 aaPredicted RBP12.8□□□□□ -0.36
SCFD1-212ENST00000554486 SGIP1Q9BQI5 828 aa12.79□□□□□ -0.36
SCFD1-212ENST00000554486 CIZ1Q9ULV3 898 aaPredicted RBP12.79□□□□□ -0.36
SCFD1-212ENST00000554486 MAP3K13O43283 966 aa12.77□□□□□ -0.37
SCFD1-212ENST00000554486 MS4A3Q96HJ5 214 aa12.77□□□□□ -0.37
SCFD1-212ENST00000554486 PYGBP11216 843 aa12.74□□□□□ -0.37
SCFD1-212ENST00000554486 PCDHB13Q9Y5F0 798 aa12.74□□□□□ -0.37
SCFD1-212ENST00000554486 CHRM1P11229 460 aaPredicted RBP12.7□□□□□ -0.38
SCFD1-212ENST00000554486 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
SCFD1-212ENST00000554486 ECM2O94769 699 aaPredicted RBP12.66□□□□□ -0.38
SCFD1-212ENST00000554486 POTEIP0CG38 1075 aa12.64□□□□□ -0.39
SCFD1-212ENST00000554486 IFNL1Q8IU54 200 aa12.64□□□□□ -0.39
SCFD1-212ENST00000554486 TIE1P35590 1138 aa12.63□□□□□ -0.39
SCFD1-212ENST00000554486 ZNF467Q7Z7K2 595 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-212ENST00000554486 RGL2O15211 777 aa12.62□□□□□ -0.39
SCFD1-212ENST00000554486 ASTLQ6HA08 431 aaPredicted RBP12.61□□□□□ -0.39
SCFD1-212ENST00000554486 ATMINO43313 823 aaPredicted RBP12.58□□□□□ -0.4
SCFD1-212ENST00000554486 PCDHB8Q9UN66 801 aa12.57□□□□□ -0.4
SCFD1-212ENST00000554486 BMP2KQ9NSY1 1161 aaPredicted RBP12.56□□□□□ -0.4
SCFD1-212ENST00000554486 TRPC6Q9Y210 931 aa12.56□□□□□ -0.4
SCFD1-212ENST00000554486 RNF25Q96BH1 459 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-212ENST00000554486 TTLL13PA6NNM8 815 aa12.53□□□□□ -0.4
SCFD1-212ENST00000554486 ATN1P54259 1190 aaPredicted RBP12.53□□□□□ -0.4
SCFD1-212ENST00000554486 SLC39A7Q92504 469 aa12.52□□□□□ -0.41
SCFD1-212ENST00000554486 TMEM106CQ9BVX2 250 aa12.52□□□□□ -0.41
SCFD1-212ENST00000554486 C7P10643 843 aa12.49□□□□□ -0.41
SCFD1-212ENST00000554486 PELP1Q8IZL8 1130 aaKnown RBP12.49□□□□□ -0.41
SCFD1-212ENST00000554486 DCAF8L2P0C7V8 631 aa12.48□□□□□ -0.41
SCFD1-212ENST00000554486 PDAP1Q13442 181 aaKnown RBP12.47□□□□□ -0.41
SCFD1-212ENST00000554486 ABCC9O60706 1549 aa12.47□□□□□ -0.41
SCFD1-212ENST00000554486 PSEN1P49768 467 aa12.46□□□□□ -0.41
SCFD1-212ENST00000554486 TRIM35Q9UPQ4 493 aa12.46□□□□□ -0.41
SCFD1-212ENST00000554486 TAOK2Q9UL54 1235 aa12.45□□□□□ -0.42
SCFD1-212ENST00000554486 RIOK3O14730 519 aaKnown RBP12.43□□□□□ -0.42
SCFD1-212ENST00000554486 METRNQ9UJH8 293 aa12.43□□□□□ -0.42
SCFD1-212ENST00000554486 GOLGA2Q08379 1002 aa12.42□□□□□ -0.42
SCFD1-212ENST00000554486 IER5LQ5T953 404 aa12.41□□□□□ -0.42
SCFD1-212ENST00000554486 LHX8Q68G74 356 aa12.41□□□□□ -0.42
SCFD1-212ENST00000554486 SEC24BO95487 1268 aa12.39□□□□□ -0.43
SCFD1-212ENST00000554486 VGFO15240 615 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-212ENST00000554486 MKRN3Q13064 507 aaKnown RBP12.35□□□□□ -0.43
SCFD1-212ENST00000554486 ZCCHC6Q5VYS8 1495 aaKnown RBP12.34□□□□□ -0.43
SCFD1-212ENST00000554486 CHGAP10645 457 aaKnown RBP12.32□□□□□ -0.44
SCFD1-212ENST00000554486 PLCG2P16885 1265 aa12.3□□□□□ -0.44
SCFD1-212ENST00000554486 HS6ST3Q8IZP7 471 aa12.3□□□□□ -0.44
SCFD1-212ENST00000554486 BBXQ8WY36 941 aaPredicted RBP12.3□□□□□ -0.44
SCFD1-212ENST00000554486 CABP2Q9NPB3 220 aa12.3□□□□□ -0.44
SCFD1-212ENST00000554486 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.29□□□□□ -0.44
SCFD1-212ENST00000554486 ZFP91Q96JP5 570 aaPredicted RBP12.29□□□□□ -0.44
SCFD1-212ENST00000554486 SLC24A1O60721 1099 aa12.28□□□□□ -0.44
SCFD1-212ENST00000554486 OCEL1Q9H607 264 aa12.28□□□□□ -0.44
SCFD1-212ENST00000554486 PLCB2Q00722 1185 aa12.27□□□□□ -0.45
SCFD1-212ENST00000554486 IRX5P78411 483 aaPredicted RBP12.26□□□□□ -0.45
SCFD1-212ENST00000554486 COLQQ9Y215 455 aaPredicted RBP12.26□□□□□ -0.45
SCFD1-212ENST00000554486 POTEFA5A3E0 1075 aa12.25□□□□□ -0.45
SCFD1-212ENST00000554486 DNAJC5Q9H3Z4 198 aa12.25□□□□□ -0.45
SCFD1-212ENST00000554486 POTEB2H3BUK9 544 aa12.24□□□□□ -0.45
SCFD1-212ENST00000554486 MAMSTRQ6ZN01 415 aa12.24□□□□□ -0.45
SCFD1-212ENST00000554486 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.23□□□□□ -0.456e-11■■□□□ 14.5
SCFD1-212ENST00000554486 NKX1-1Q15270 411 aaPredicted RBP12.22□□□□□ -0.45
SCFD1-212ENST00000554486 STK25O00506 426 aa12.21□□□□□ -0.45
SCFD1-212ENST00000554486 BCL11BQ9C0K0 894 aaPredicted RBP12.21□□□□□ -0.45
SCFD1-212ENST00000554486 STK24Q9Y6E0 443 aa12.2□□□□□ -0.46
SCFD1-212ENST00000554486 DCAF1Q9Y4B6 1507 aa12.2□□□□□ -0.46
SCFD1-212ENST00000554486 EFCAB3Q8N7B9 438 aa12.19□□□□□ -0.46
SCFD1-212ENST00000554486 SCUBE2Q9NQ36 999 aa12.19□□□□□ -0.46
SCFD1-212ENST00000554486 SOX12O15370 315 aa12.18□□□□□ -0.46
SCFD1-212ENST00000554486 L3MBTL3Q96JM7 780 aaPredicted RBP12.15□□□□□ -0.46
SCFD1-212ENST00000554486 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.15□□□□□ -0.46
SCFD1-212ENST00000554486 MYO15BQ96JP2 1530 aa12.15□□□□□ -0.46
SCFD1-212ENST00000554486 PAXIP1Q6ZW49 1069 aaPredicted RBP12.14□□□□□ -0.47
SCFD1-212ENST00000554486 PDCD7Q8N8D1 485 aaKnown RBP12.14□□□□□ -0.47
SCFD1-212ENST00000554486 OTUD5Q96G74 571 aa12.14□□□□□ -0.47
SCFD1-212ENST00000554486 NACADO15069 1562 aa12.13□□□□□ -0.47
SCFD1-212ENST00000554486 POTEJP0CG39 1038 aa12.13□□□□□ -0.47
SCFD1-212ENST00000554486 ILDR1Q86SU0 546 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-212ENST00000554486 G3V3G9 751 aa12.11□□□□□ -0.47
SCFD1-212ENST00000554486 CFAP44Q96MT7 982 aa12.1□□□□□ -0.47
SCFD1-212ENST00000554486 SPRYD3Q8NCJ5 442 aa12.09□□□□□ -0.47
SCFD1-212ENST00000554486 GTPBP6O43824 516 aaPredicted RBP12.08□□□□□ -0.48
SCFD1-212ENST00000554486 NLRP6P59044 892 aa12.08□□□□□ -0.48
SCFD1-212ENST00000554486 RB1CC1Q8TDY2 1594 aa12.08□□□□□ -0.48
SCFD1-212ENST00000554486 PHF8Q9UPP1 1060 aa12.05□□□□□ -0.48
SCFD1-212ENST00000554486 HAP1P54257 671 aaPredicted RBP12.04□□□□□ -0.48
SCFD1-212ENST00000554486 DPY19L2Q6NUT2 758 aa12.04□□□□□ -0.48
SCFD1-212ENST00000554486 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.04□□□□□ -0.48
SCFD1-212ENST00000554486 C3orf67Q6ZVT6 689 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms