RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 OSCARQ8IYS5 282 aa11.82□□□□□ -0.52
SCFD1-208ENST00000553278 DNAJC5Q9H3Z4 198 aa11.82□□□□□ -0.52
SCFD1-208ENST00000553278 HS6ST3Q8IZP7 471 aa11.79□□□□□ -0.52
SCFD1-208ENST00000553278 GSE1Q14687 1217 aa11.69□□□□□ -0.54
SCFD1-208ENST00000553278 AKT1S1Q96B36 256 aa11.63□□□□□ -0.55
SCFD1-208ENST00000553278 PIP4P2Q8N4L2 257 aa11.61□□□□□ -0.55
SCFD1-208ENST00000553278 RNF25Q96BH1 459 aaPredicted RBP11.61□□□□□ -0.55
SCFD1-208ENST00000553278 HAX1O00165 279 aa11.6□□□□□ -0.55
SCFD1-208ENST00000553278 RIOK3O14730 519 aaKnown RBP11.59□□□□□ -0.55
SCFD1-208ENST00000553278 TULP1O00294 542 aaPredicted RBP11.57□□□□□ -0.56
SCFD1-208ENST00000553278 GTPBP6O43824 516 aaPredicted RBP11.57□□□□□ -0.56
SCFD1-208ENST00000553278 NKX1-1Q15270 411 aaPredicted RBP11.57□□□□□ -0.56
SCFD1-208ENST00000553278 ERICH6Q7L0X2 663 aa11.57□□□□□ -0.56
SCFD1-208ENST00000553278 TIMELESSQ9UNS1 1208 aa11.57□□□□□ -0.56
SCFD1-208ENST00000553278 GTF3C3Q9Y5Q9 886 aa11.56□□□□□ -0.56
SCFD1-208ENST00000553278 DCAF8Q5TAQ9 597 aa11.55□□□□□ -0.56
SCFD1-208ENST00000553278 STK25O00506 426 aa11.52□□□□□ -0.57
SCFD1-208ENST00000553278 NUBP1P53384 320 aa11.52□□□□□ -0.57
SCFD1-208ENST00000553278 REM2Q8IYK8 340 aaPredicted RBP11.52□□□□□ -0.57
SCFD1-208ENST00000553278 VGFO15240 615 aaPredicted RBP11.51□□□□□ -0.57
SCFD1-208ENST00000553278 RYDENQ9NUL5 291 aaKnown RBP11.51□□□□□ -0.57
SCFD1-208ENST00000553278 FAM212AQ96EL1 285 aa11.47□□□□□ -0.57
SCFD1-208ENST00000553278 TMEM132AQ24JP5 1023 aa11.45□□□□□ -0.58
SCFD1-208ENST00000553278 FXR2P51116 673 aaKnown RBP eCLIP11.44□□□□□ -0.58
SCFD1-208ENST00000553278 P3H3Q8IVL6 736 aa11.43□□□□□ -0.58
SCFD1-208ENST00000553278 CHRM1P11229 460 aaPredicted RBP11.42□□□□□ -0.58
SCFD1-208ENST00000553278 SGIP1Q9BQI5 828 aa11.41□□□□□ -0.58
SCFD1-208ENST00000553278 PITPNM1O00562 1244 aa11.4□□□□□ -0.58
SCFD1-208ENST00000553278 STK24Q9Y6E0 443 aa11.4□□□□□ -0.58
SCFD1-208ENST00000553278 EVX2Q03828 476 aa11.39□□□□□ -0.59
SCFD1-208ENST00000553278 ARXQ96QS3 562 aa11.38□□□□□ -0.59
SCFD1-208ENST00000553278 BCL11BQ9C0K0 894 aaPredicted RBP11.38□□□□□ -0.59
SCFD1-208ENST00000553278 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.35□□□□□ -0.59
SCFD1-208ENST00000553278 SPDYE1Q8NFV5 336 aaPredicted RBP11.35□□□□□ -0.59
SCFD1-208ENST00000553278 ZFP91Q96JP5 570 aaPredicted RBP11.35□□□□□ -0.59
SCFD1-208ENST00000553278 WDR70Q9NW82 654 aa11.32□□□□□ -0.6
SCFD1-208ENST00000553278 CREBZFQ9NS37 354 aa11.3□□□□□ -0.6
SCFD1-208ENST00000553278 PRR29P0C7W0 189 aa11.29□□□□□ -0.6
SCFD1-208ENST00000553278 C14orf37Q86TY3 774 aa11.27□□□□□ -0.61
SCFD1-208ENST00000553278 RASEFQ8IZ41 740 aa11.27□□□□□ -0.61
SCFD1-208ENST00000553278 MNX1P50219 401 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-208ENST00000553278 PYGBP11216 843 aa11.25□□□□□ -0.61
SCFD1-208ENST00000553278 LMOD2Q6P5Q4 547 aa11.25□□□□□ -0.61
SCFD1-208ENST00000553278 CLEC11AQ9Y240 323 aa11.25□□□□□ -0.61
SCFD1-208ENST00000553278 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.23□□□□□ -0.61
SCFD1-208ENST00000553278 KCNV2Q8TDN2 545 aa11.23□□□□□ -0.61
SCFD1-208ENST00000553278 LHX8Q68G74 356 aa11.22□□□□□ -0.61
SCFD1-208ENST00000553278 DAXXQ9UER7 740 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-208ENST00000553278 CADPS2Q86UW7 1296 aa11.16□□□□□ -0.62
SCFD1-208ENST00000553278 HOMEZQ8IX15 550 aa11.16□□□□□ -0.62
SCFD1-208ENST00000553278 ZNF467Q7Z7K2 595 aaPredicted RBP11.15□□□□□ -0.62
SCFD1-208ENST00000553278 BRPF1P55201 1214 aaPredicted RBP11.12□□□□□ -0.63
SCFD1-208ENST00000553278 C19orf67A6NJJ6 358 aa11.1□□□□□ -0.63
SCFD1-208ENST00000553278 GABBR2O75899 941 aa11.1□□□□□ -0.63
SCFD1-208ENST00000553278 PRKAR2AP13861 404 aaKnown RBP11.1□□□□□ -0.63
SCFD1-208ENST00000553278 PDAP1Q13442 181 aaKnown RBP11.1□□□□□ -0.63
SCFD1-208ENST00000553278 ARHGEF1Q92888 912 aaKnown RBP11.1□□□□□ -0.63
SCFD1-208ENST00000553278 PLSCR2Q9NRY7 297 aa11.07□□□□□ -0.64
SCFD1-208ENST00000553278 ZC3H15Q8WU90 426 aaKnown RBP11.06□□□□□ -0.64
SCFD1-208ENST00000553278 NEUROD2Q15784 382 aa11.05□□□□□ -0.64
SCFD1-208ENST00000553278 E2F4Q16254 413 aa11.02□□□□□ -0.65
SCFD1-208ENST00000553278 MFRPQ9BY79 579 aa11.01□□□□□ -0.65
SCFD1-208ENST00000553278 TSPYL2Q9H2G4 693 aaPredicted RBP11.01□□□□□ -0.65
SCFD1-208ENST00000553278 PCDHB8Q9UN66 801 aa10.99□□□□□ -0.65
SCFD1-208ENST00000553278 PCDHB13Q9Y5F0 798 aa10.99□□□□□ -0.65
SCFD1-208ENST00000553278 TESPA1A2RU30 521 aaPredicted RBP10.98□□□□□ -0.65
SCFD1-208ENST00000553278 PSEN1P49768 467 aa10.98□□□□□ -0.65
SCFD1-208ENST00000553278 SLC24A3Q9HC58 644 aa10.98□□□□□ -0.65
SCFD1-208ENST00000553278 SEMA3EO15041 775 aa10.96□□□□□ -0.65
SCFD1-208ENST00000553278 SMYD5Q6GMV2 418 aa10.96□□□□□ -0.65
SCFD1-208ENST00000553278 ZNF579Q8NAF0 562 aaKnown RBP10.95□□□□□ -0.66
SCFD1-208ENST00000553278 NLRP6P59044 892 aa10.94□□□□□ -0.66
SCFD1-208ENST00000553278 PPP1R37O75864 691 aa10.91□□□□□ -0.66
SCFD1-208ENST00000553278 SOX12O15370 315 aa10.9□□□□□ -0.66
SCFD1-208ENST00000553278 SUPT5HO00267 1087 aaKnown RBP10.89□□□□□ -0.67
SCFD1-208ENST00000553278 ZMYND10O75800 440 aa10.89□□□□□ -0.67
SCFD1-208ENST00000553278 FBXO22Q8NEZ5 403 aa10.88□□□□□ -0.67
SCFD1-208ENST00000553278 CHADLQ6NUI6 762 aa10.87□□□□□ -0.67
SCFD1-208ENST00000553278 POTEIP0CG38 1075 aa10.86□□□□□ -0.67
SCFD1-208ENST00000553278 EFCAB3Q8N7B9 438 aa10.86□□□□□ -0.67
SCFD1-208ENST00000553278 FARP1Q9Y4F1 1045 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-208ENST00000553278 CCDC61Q9Y6R9 512 aa10.86□□□□□ -0.67
SCFD1-208ENST00000553278 PDE4AP27815 886 aa10.85□□□□□ -0.67
SCFD1-208ENST00000553278 CABP2Q9NPB3 220 aa10.84□□□□□ -0.67
SCFD1-208ENST00000553278 PHF8Q9UPP1 1060 aa10.84□□□□□ -0.67
SCFD1-208ENST00000553278 LARP6Q9BRS8 491 aaKnown RBP10.83□□□□□ -0.68
SCFD1-208ENST00000553278 BARGINQ6ZT62 677 aa10.82□□□□□ -0.68
SCFD1-208ENST00000553278 ARIH1Q9Y4X5 557 aaPredicted RBP10.81□□□□□ -0.68
SCFD1-208ENST00000553278 NCKAP5LQ9HCH0 1330 aa10.81□□□□□ -0.68
SCFD1-208ENST00000553278 PAK3O75914 559 aaPredicted RBP10.79□□□□□ -0.68
SCFD1-208ENST00000553278 MFSD10Q14728 455 aa10.79□□□□□ -0.68
SCFD1-208ENST00000553278 IFNL1Q8IU54 200 aa10.79□□□□□ -0.68
SCFD1-208ENST00000553278 AK7Q96M32 723 aa10.79□□□□□ -0.68
SCFD1-208ENST00000553278 DDX27Q96GQ7 796 aaKnown RBP10.78□□□□□ -0.68
SCFD1-208ENST00000553278 KRI1Q8N9T8 703 aaKnown RBP10.75□□□□□ -0.69
SCFD1-208ENST00000553278 CRISPLD2Q9H0B8 497 aa10.75□□□□□ -0.69
SCFD1-208ENST00000553278 MAP3K13O43283 966 aa10.73□□□□□ -0.69
SCFD1-208ENST00000553278 GPIHBP1Q8IV16 184 aa10.73□□□□□ -0.69
SCFD1-208ENST00000553278 CAMK2BQ13554 666 aa10.72□□□□□ -0.69
SCFD1-208ENST00000553278 CD44P16070 742 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms