RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	RASEF	Q8IZ41	740 aa		11.27	□□□□□ -0.61
SNHG1-222	ENST00000545308	KIF12	Q96FN5	646 aa		11.25	□□□□□ -0.61
SNHG1-222	ENST00000545308	ASTL	Q6HA08	431 aa	Predicted RBP	11.24	□□□□□ -0.61
SNHG1-222	ENST00000545308	PELP1	Q8IZL8	1130 aa	Known RBP	11.24	□□□□□ -0.61
SNHG1-222	ENST00000545308	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.24	□□□□□ -0.61
SNHG1-222	ENST00000545308	ATMIN	O43313	823 aa	Predicted RBP	11.21	□□□□□ -0.61
SNHG1-222	ENST00000545308	NUBP1	P53384	320 aa		11.19	□□□□□ -0.62
SNHG1-222	ENST00000545308	MAP3K13	O43283	966 aa		11.18	□□□□□ -0.62
SNHG1-222	ENST00000545308	POTEB2	H3BUK9	544 aa		11.17	□□□□□ -0.62
SNHG1-222	ENST00000545308	FBXO3	Q9UK99	471 aa		11.17	□□□□□ -0.62
SNHG1-222	ENST00000545308	SLC39A7	Q92504	469 aa		11.15	□□□□□ -0.62
SNHG1-222	ENST00000545308	C7	P10643	843 aa		11.14	□□□□□ -0.63
SNHG1-222	ENST00000545308	ATN1	P54259	1190 aa	Predicted RBP	11.13	□□□□□ -0.63
SNHG1-222	ENST00000545308	METRN	Q9UJH8	293 aa		11.13	□□□□□ -0.63
SNHG1-222	ENST00000545308	TRPC6	Q9Y210	931 aa		11.13	□□□□□ -0.63
SNHG1-222	ENST00000545308	OTUD5	Q96G74	571 aa		11.12	□□□□□ -0.63
SNHG1-222	ENST00000545308	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.12	□□□□□ -0.63
SNHG1-222	ENST00000545308	TIE1	P35590	1138 aa		11.1	□□□□□ -0.63
SNHG1-222	ENST00000545308	FAM212A	Q96EL1	285 aa		11.1	□□□□□ -0.63
SNHG1-222	ENST00000545308	SGIP1	Q9BQI5	828 aa		11.1	□□□□□ -0.63
SNHG1-222	ENST00000545308	PCDHB13	Q9Y5F0	798 aa		11.07	□□□□□ -0.64
SNHG1-222	ENST00000545308	TTLL13P	A6NNM8	815 aa		11.04	□□□□□ -0.64
SNHG1-222	ENST00000545308	POTEJ	P0CG39	1038 aa		11.02	□□□□□ -0.65
SNHG1-222	ENST00000545308	VASP	P50552	380 aa	Predicted RBP	11.02	□□□□□ -0.65
SNHG1-222	ENST00000545308	DCAF8	Q5TAQ9	597 aa		11.01	□□□□□ -0.65
SNHG1-222	ENST00000545308	IFNL1	Q8IU54	200 aa		11.01	□□□□□ -0.65
SNHG1-222	ENST00000545308	POTEF	A5A3E0	1075 aa		10.99	□□□□□ -0.65
SNHG1-222	ENST00000545308	MAMSTR	Q6ZN01	415 aa		10.97	□□□□□ -0.65
SNHG1-222	ENST00000545308	KLHL34	Q8N239	644 aa		10.96	□□□□□ -0.65
SNHG1-222	ENST00000545308	TRIM35	Q9UPQ4	493 aa		10.96	□□□□□ -0.65
SNHG1-222	ENST00000545308	PYGB	P11216	843 aa		10.95	□□□□□ -0.66
SNHG1-222	ENST00000545308	IER5L	Q5T953	404 aa		10.93	□□□□□ -0.66
SNHG1-222	ENST00000545308	TMEM106C	Q9BVX2	250 aa		10.93	□□□□□ -0.66
SNHG1-222	ENST00000545308	SEC24B	O95487	1268 aa		10.92	□□□□□ -0.66
SNHG1-222	ENST00000545308	COLQ	Q9Y215	455 aa	Predicted RBP	10.92	□□□□□ -0.66
SNHG1-222	ENST00000545308	SCUBE2	Q9NQ36	999 aa		10.91	□□□□□ -0.66
SNHG1-222	ENST00000545308	GSE1	Q14687	1217 aa		10.9	□□□□□ -0.66
SNHG1-222	ENST00000545308	PCDHB8	Q9UN66	801 aa		10.86	□□□□□ -0.67
SNHG1-222	ENST00000545308	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.84	□□□□□ -0.67
SNHG1-222	ENST00000545308	CHRM1	P11229	460 aa	Predicted RBP	10.82	□□□□□ -0.68
SNHG1-222	ENST00000545308	IRX5	P78411	483 aa	Predicted RBP	10.8	□□□□□ -0.68
SNHG1-222	ENST00000545308	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.8	□□□□□ -0.68
SNHG1-222	ENST00000545308	SPOCK2	Q92563	424 aa		10.8	□□□□□ -0.68
SNHG1-222	ENST00000545308	POTEM	A6NI47	508 aa		10.79	□□□□□ -0.68
SNHG1-222	ENST00000545308	PLCG2	P16885	1265 aa		10.79	□□□□□ -0.68
SNHG1-222	ENST00000545308	POTEG	Q6S5H5	508 aa		10.77	□□□□□ -0.69
SNHG1-222	ENST00000545308	OCEL1	Q9H607	264 aa		10.76	□□□□□ -0.69
SNHG1-222	ENST00000545308	FAM163A	Q96GL9	167 aa	Predicted RBP	10.74	□□□□□ -0.69
SNHG1-222	ENST00000545308	LCE2D	Q5TA82	110 aa	Predicted RBP	10.73	□□□□□ -0.69
SNHG1-222	ENST00000545308	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.73	□□□□□ -0.69
SNHG1-222	ENST00000545308	PSEN1	P49768	467 aa		10.7	□□□□□ -0.7
SNHG1-222	ENST00000545308	SLAIN1	Q8ND83	568 aa		10.68	□□□□□ -0.7
SNHG1-222	ENST00000545308	GOLGA2	Q08379	1002 aa		10.67	□□□□□ -0.7
SNHG1-222	ENST00000545308	MKRN3	Q13064	507 aa	Known RBP	10.67	□□□□□ -0.7
SNHG1-222	ENST00000545308	PDAP1	Q13442	181 aa	Known RBP	10.67	□□□□□ -0.7
SNHG1-222	ENST00000545308	PLSCR2	Q9NRY7	297 aa		10.67	□□□□□ -0.7
SNHG1-222	ENST00000545308	PDCD7	Q8N8D1	485 aa	Known RBP	10.65	□□□□□ -0.7
SNHG1-222	ENST00000545308	PCDH10	Q9P2E7	1040 aa		10.63	□□□□□ -0.71
SNHG1-222	ENST00000545308	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.61	□□□□□ -0.71
SNHG1-222	ENST00000545308	TRIM41	Q8WV44	630 aa		10.6	□□□□□ -0.71
SNHG1-222	ENST00000545308	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.6	□□□□□ -0.71
SNHG1-222	ENST00000545308	ILDR1	Q86SU0	546 aa	Predicted RBP	10.58	□□□□□ -0.72
SNHG1-222	ENST00000545308	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.58	□□□□□ -0.72
SNHG1-222	ENST00000545308	CABP2	Q9NPB3	220 aa		10.57	□□□□□ -0.72
SNHG1-222	ENST00000545308	ST18	O60284	1047 aa		10.55	□□□□□ -0.72
SNHG1-222	ENST00000545308	C3orf67	Q6ZVT6	689 aa		10.53	□□□□□ -0.72
SNHG1-222	ENST00000545308	SNPH	O15079	494 aa		10.51	□□□□□ -0.73
SNHG1-222	ENST00000545308	DPY19L2	Q6NUT2	758 aa		10.5	□□□□□ -0.73
SNHG1-222	ENST00000545308	RIOK3	O14730	519 aa	Known RBP	10.46	□□□□□ -0.73
SNHG1-222	ENST00000545308	CDAN1	Q8IWY9	1227 aa		10.46	□□□□□ -0.73
SNHG1-222	ENST00000545308	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.46	□□□□□ -0.73
SNHG1-222	ENST00000545308	EFCAB3	Q8N7B9	438 aa		10.45	□□□□□ -0.74
SNHG1-222	ENST00000545308	RNF25	Q96BH1	459 aa	Predicted RBP	10.45	□□□□□ -0.74
SNHG1-222	ENST00000545308	BOLA1	Q9Y3E2	137 aa		10.44	□□□□□ -0.74
SNHG1-222	ENST00000545308		G3V3G9	751 aa		10.43	□□□□□ -0.74
SNHG1-222	ENST00000545308	VGF	O15240	615 aa	Predicted RBP	10.41	□□□□□ -0.74
SNHG1-222	ENST00000545308	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.4	□□□□□ -0.74
SNHG1-222	ENST00000545308	ZFP91	Q96JP5	570 aa	Predicted RBP	10.4	□□□□□ -0.74
SNHG1-222	ENST00000545308	RTN4	Q9NQC3	1192 aa	Known RBP	10.38	□□□□□ -0.75
SNHG1-222	ENST00000545308	SOX12	O15370	315 aa		10.37	□□□□□ -0.75
SNHG1-222	ENST00000545308	MARVELD3	Q96A59	401 aa		10.37	□□□□□ -0.75
SNHG1-222	ENST00000545308	EMP3	P54852	163 aa		10.31	□□□□□ -0.76
SNHG1-222	ENST00000545308	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.31	□□□□□ -0.76
SNHG1-222	ENST00000545308	MS4A4A	Q96JQ5	239 aa		10.31	□□□□□ -0.76
SNHG1-222	ENST00000545308	TAOK2	Q9UL54	1235 aa		10.31	□□□□□ -0.76
SNHG1-222	ENST00000545308	PHF8	Q9UPP1	1060 aa		10.31	□□□□□ -0.76
SNHG1-222	ENST00000545308	HOXB3	P14651	431 aa	Predicted RBP	10.3	□□□□□ -0.76
SNHG1-222	ENST00000545308	MICALL2	Q8IY33	904 aa		10.3	□□□□□ -0.76
SNHG1-222	ENST00000545308	ECM2	O94769	699 aa	Predicted RBP	10.28	□□□□□ -0.76
SNHG1-222	ENST00000545308	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.28	□□□□□ -0.76
SNHG1-222	ENST00000545308	TMEM92	Q6UXU6	159 aa		10.25	□□□□□ -0.77
SNHG1-222	ENST00000545308	STK24	Q9Y6E0	443 aa		10.25	□□□□□ -0.77
SNHG1-222	ENST00000545308	POTEB3	A0JP26	581 aa		10.24	□□□□□ -0.77
SNHG1-222	ENST00000545308	NLRP6	P59044	892 aa		10.24	□□□□□ -0.77
SNHG1-222	ENST00000545308	PKD2	Q13563	968 aa		10.24	□□□□□ -0.77
SNHG1-222	ENST00000545308	DOK7	Q18PE1	504 aa		10.24	□□□□□ -0.77
SNHG1-222	ENST00000545308	POTEB	Q6S5H4	581 aa		10.24	□□□□□ -0.77
SNHG1-222	ENST00000545308	HS3ST6	Q96QI5	342 aa		10.24	□□□□□ -0.77
SNHG1-222	ENST00000545308	FAM205C	A6NFA0	338 aa		10.23	□□□□□ -0.77
SNHG1-222	ENST00000545308	ZNF710	Q8N1W2	664 aa		10.23	□□□□□ -0.77

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