RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, human

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-223	ENST00000545215	DMRT2	Q9Y5R5	561 aa		13.64	□□□□□ -0.23
LDHA-223	ENST00000545215	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.62	□□□□□ -0.23
LDHA-223	ENST00000545215	TOPBP1	Q92547	1522 aa		13.6	□□□□□ -0.23
LDHA-223	ENST00000545215	ABCC10	Q5T3U5	1492 aa		13.58	□□□□□ -0.24
LDHA-223	ENST00000545215	TARBP1	Q13395	1621 aa	Known RBP	13.58	□□□□□ -0.24
LDHA-223	ENST00000545215	SLC4A2	P04920	1241 aa		13.55	□□□□□ -0.24
LDHA-223	ENST00000545215	SPATA31D1	Q6ZQQ2	1576 aa		13.53	□□□□□ -0.24
LDHA-223	ENST00000545215	SNAPC4	Q5SXM2	1469 aa		13.52	□□□□□ -0.24
LDHA-223	ENST00000545215	ABCC8	Q09428	1581 aa		13.5	□□□□□ -0.25
LDHA-223	ENST00000545215	DIP2B	Q9P265	1576 aa		13.47	□□□□□ -0.25
LDHA-223	ENST00000545215	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.46	□□□□□ -0.25
LDHA-223	ENST00000545215	TDRD9	Q8NDG6	1382 aa	Known RBP	13.46	□□□□□ -0.26
LDHA-223	ENST00000545215	CERK	Q8TCT0	537 aa		13.43	□□□□□ -0.26
LDHA-223	ENST00000545215	DNMBP	Q6XZF7	1577 aa		13.41	□□□□□ -0.26
LDHA-223	ENST00000545215	MAPKBP1	O60336	1514 aa		13.4	□□□□□ -0.26
LDHA-223	ENST00000545215	PRDM2	Q13029	1718 aa		13.4	□□□□□ -0.26
LDHA-223	ENST00000545215	TSPOAP1	O95153	1857 aa		13.39	□□□□□ -0.27
LDHA-223	ENST00000545215	ATXN8OS	P0DMR3	200 aa		13.38	□□□□□ -0.27
LDHA-223	ENST00000545215	WIZ	O95785	1651 aa		13.37	□□□□□ -0.27
LDHA-223	ENST00000545215	POLA1	P09884	1462 aa	Predicted RBP	13.37	□□□□□ -0.27
LDHA-223	ENST00000545215	MYCN	P04198	464 aa	Predicted RBP	13.37	□□□□□ -0.27
LDHA-223	ENST00000545215	NPM1	P06748	294 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
LDHA-223	ENST00000545215	CEP170	Q5SW79	1584 aa		13.35	□□□□□ -0.27
LDHA-223	ENST00000545215	RAD54L2	Q9Y4B4	1467 aa		13.35	□□□□□ -0.27
LDHA-223	ENST00000545215	TOP2B	Q02880	1626 aa		13.35	□□□□□ -0.27
LDHA-223	ENST00000545215	WDR97	A6NE52	1622 aa		13.33	□□□□□ -0.27
LDHA-223	ENST00000545215	GRIN2B	Q13224	1484 aa		13.33	□□□□□ -0.28
LDHA-223	ENST00000545215	SOGA1	O94964	1423 aa		13.31	□□□□□ -0.28
LDHA-223	ENST00000545215	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.27	□□□□□ -0.29
LDHA-223	ENST00000545215	SHROOM2	Q13796	1616 aa		13.24	□□□□□ -0.29
LDHA-223	ENST00000545215	RTN4	Q9NQC3	1192 aa	Known RBP	13.22	□□□□□ -0.29
LDHA-223	ENST00000545215	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.21	□□□□□ -0.29
LDHA-223	ENST00000545215	PPRC1	Q5VV67	1664 aa	Known RBP	13.19	□□□□□ -0.3
LDHA-223	ENST00000545215	PCF11	O94913	1555 aa	Known RBP	13.19	□□□□□ -0.3
LDHA-223	ENST00000545215	NUP160	Q12769	1436 aa		13.17	□□□□□ -0.3
LDHA-223	ENST00000545215	PRG4	Q92954	1404 aa	Predicted RBP	13.16	□□□□□ -0.3
LDHA-223	ENST00000545215	ADCY10	Q96PN6	1610 aa		13.15	□□□□□ -0.3
LDHA-223	ENST00000545215	FKBP8	Q14318	412 aa		13.14	□□□□□ -0.31
LDHA-223	ENST00000545215	PTPRM	P28827	1452 aa		13.14	□□□□□ -0.31
LDHA-223	ENST00000545215	GRIN2A	Q12879	1464 aa		13.14	□□□□□ -0.31
LDHA-223	ENST00000545215	PBRM1	Q86U86	1689 aa		13.11	□□□□□ -0.31
LDHA-223	ENST00000545215	TOP2A	P11388	1531 aa	Known RBP	13.11	□□□□□ -0.31
LDHA-223	ENST00000545215	GLI2	P10070	1586 aa		13.09	□□□□□ -0.31
LDHA-223	ENST00000545215	FGD5	Q6ZNL6	1462 aa		13.08	□□□□□ -0.31
LDHA-223	ENST00000545215	JPH4	Q96JJ6	628 aa		13.08	□□□□□ -0.32
LDHA-223	ENST00000545215	HSPA2	P54652	639 aa		13.07	□□□□□ -0.32
LDHA-223	ENST00000545215	SLC24A1	O60721	1099 aa		13.06	□□□□□ -0.32
LDHA-223	ENST00000545215	CCDC88B	A6NC98	1476 aa		13.02	□□□□□ -0.33
LDHA-223	ENST00000545215	TEX14	Q8IWB6	1497 aa		13.01	□□□□□ -0.33
LDHA-223	ENST00000545215	ADAMTSL3	P82987	1691 aa		13.01	□□□□□ -0.33
LDHA-223	ENST00000545215	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.99	□□□□□ -0.33
LDHA-223	ENST00000545215	KIF21B	O75037	1637 aa		12.98	□□□□□ -0.33
LDHA-223	ENST00000545215	PLB1	Q6P1J6	1458 aa		12.98	□□□□□ -0.33
LDHA-223	ENST00000545215	ASXL2	Q76L83	1435 aa		12.97	□□□□□ -0.33
LDHA-223	ENST00000545215	ABCA5	Q8WWZ7	1642 aa		12.95	□□□□□ -0.34
LDHA-223	ENST00000545215	MAP3K4	Q9Y6R4	1608 aa		12.95	□□□□□ -0.34
LDHA-223	ENST00000545215	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.94	□□□□□ -0.34
LDHA-223	ENST00000545215	DCAF8L1	A6NGE4	600 aa		12.93	□□□□□ -0.34
LDHA-223	ENST00000545215	ADAMTS12	P58397	1594 aa		12.92	□□□□□ -0.34
LDHA-223	ENST00000545215	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.89	□□□□□ -0.35
LDHA-223	ENST00000545215	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.89	□□□□□ -0.35
LDHA-223	ENST00000545215	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.89	□□□□□ -0.35
LDHA-223	ENST00000545215	MED1	Q15648	1581 aa	Predicted RBP	12.89	□□□□□ -0.35
LDHA-223	ENST00000545215	FHAD1	B1AJZ9	1412 aa		12.89	□□□□□ -0.35
LDHA-223	ENST00000545215	KIAA0586	Q9BVV6	1533 aa		12.89	□□□□□ -0.35
LDHA-223	ENST00000545215	EPRS	P07814	1512 aa	Known RBP	12.88	□□□□□ -0.35
LDHA-223	ENST00000545215	ABCA10	Q8WWZ4	1543 aa		12.88	□□□□□ -0.35
LDHA-223	ENST00000545215	ABCC2	Q92887	1545 aa		12.88	□□□□□ -0.35
LDHA-223	ENST00000545215		U3KPZ7	1027 aa	Predicted RBP	12.88	□□□□□ -0.35
LDHA-223	ENST00000545215	CUX1	P39880	1505 aa		12.87	□□□□□ -0.35
LDHA-223	ENST00000545215	IQSEC2	Q5JU85	1478 aa		12.87	□□□□□ -0.35
LDHA-223	ENST00000545215	MADD	Q8WXG6	1647 aa		12.84	□□□□□ -0.35
LDHA-223	ENST00000545215	YEATS2	Q9ULM3	1422 aa		12.83	□□□□□ -0.36
LDHA-223	ENST00000545215	BCORL1	Q5H9F3	1711 aa		12.82	□□□□□ -0.36
LDHA-223	ENST00000545215	LTBP4	Q8N2S1	1624 aa		12.79	□□□□□ -0.36
LDHA-223	ENST00000545215	PTPRG	P23470	1445 aa		12.79	□□□□□ -0.36
LDHA-223	ENST00000545215	RUSC2	Q8N2Y8	1516 aa		12.78	□□□□□ -0.36
LDHA-223	ENST00000545215	STRC	Q7RTU9	1775 aa		12.76	□□□□□ -0.37
LDHA-223	ENST00000545215	CUL7	Q14999	1698 aa		12.75	□□□□□ -0.37
LDHA-223	ENST00000545215	RIMS1	Q86UR5	1692 aa	Known RBP	12.75	□□□□□ -0.37
LDHA-223	ENST00000545215	UBAP1L	F5GYI3	381 aa		12.75	□□□□□ -0.37
LDHA-223	ENST00000545215	MAGI3	Q5TCQ9	1506 aa		12.74	□□□□□ -0.37
LDHA-223	ENST00000545215	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.73	□□□□□ -0.37
LDHA-223	ENST00000545215	PTPRT	O14522	1441 aa		12.73	□□□□□ -0.37
LDHA-223	ENST00000545215	UHRF1BP1L	A0JNW5	1464 aa		12.72	□□□□□ -0.37
LDHA-223	ENST00000545215	ARAP3	Q8WWN8	1544 aa		12.7	□□□□□ -0.38
LDHA-223	ENST00000545215	HSPA1L	P34931	641 aa		12.7	□□□□□ -0.38
LDHA-223	ENST00000545215	CD109	Q6YHK3	1445 aa		12.7	□□□□□ -0.38
LDHA-223	ENST00000545215	ERICH3	Q5RHP9	1530 aa		12.69	□□□□□ -0.38
LDHA-223	ENST00000545215	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.67	□□□□□ -0.38
LDHA-223	ENST00000545215	KDM5B	Q9UGL1	1544 aa		12.67	□□□□□ -0.38
LDHA-223	ENST00000545215	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.67	□□□□□ -0.38
LDHA-223	ENST00000545215	CFAP43	Q8NDM7	1665 aa		12.64	□□□□□ -0.39
LDHA-223	ENST00000545215	TNIK	Q9UKE5	1360 aa		12.63	□□□□□ -0.39
LDHA-223	ENST00000545215	UACA	Q9BZF9	1416 aa		12.63	□□□□□ -0.39
LDHA-223	ENST00000545215	RGS17	Q9UGC6	210 aa	Predicted RBP	12.62	□□□□□ -0.39
LDHA-223	ENST00000545215	PREX1	Q8TCU6	1659 aa		12.61	□□□□□ -0.39
LDHA-223	ENST00000545215	WDR7	Q9Y4E6	1490 aa		12.61	□□□□□ -0.39
LDHA-223	ENST00000545215	RAPGEF3	O95398	923 aa		12.59	□□□□□ -0.39
LDHA-223	ENST00000545215	ZCCHC11	Q5TAX3	1644 aa	Known RBP	12.59	□□□□□ -0.39

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